Rroxscaffold_7G00201760

Long-chain-alcohol

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000676
Physical Location & Seq
Reverse (-)
49553116 .. 49554587
1472 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00201760.1

Sequence Viewer

Length: 1095 bp
ATGGATGGTGACGAAATCAAAAACTTCATCAAGGTGTGGATCATAGCCATTGCATCTCAATGTTATTGTTATTACGTTGCAGCAAGAATCCCAACAAAGAGCATGATGAGGCTCATCTCTCTCCTCCCAATCTTGTACCTCCTTGTCATGCTCCCCTTGAACCTCCACTCGATCCATCTCGGTGCCCCCTCAGCCTTCTTTCTTGGTTGTCTTGCCATCTTCAAACTCATTCTCTTCTCCTTTGACTCTGGCCCTCTATCACCGCCCCCGACAAGACTTCTCCACTTCATTTCCATAGCTCTTCTTCCCATCAACATTAAGAGACTCCCCCAAAAGCCTTGCTACCGTTACACTATGACAAAGTTGGTGCCAAACAAAGCAATTTTATGGACAATGAAGGCCTTGCTTGTGGGTGTAGTAATTCTTGTACGCAAGGATTATAGACAGAATTTACATCCATATGTACTCACAGCCTTGTCCCTTTCCCACCTGTACCTTGGTCTAGAAATAGGCTTTGCTCTGAGTGTAGTCTTGCCTCAAGCCATGTTTGGGTTTGAACTCGAGCCACACTTCAACGAGCCTTACTTTTCCACATCTCTTCAGGACTTTTGGGGCCGTAGATGGAACCTTGTAGTCTCAAACACTCTACGCCCCCTTGTATACCATCCGGTGAGGCGTATATCTACAGGCAAGGGCGGAGCCACCTTCGAGCTAACGGTTACGGCAAAACCTTCGCGGACTCCAATTCTGCCGGTCATCTCTGCTTTCACCATCTCGGGTTTCATGCACGAGCTGTTCTTTTACTACGTTACTCGTGCGCGTCCCACAGGGGAAATGATGTGCTTCTTTCTCCTACAAGGTGTGTGCTTGGCAATTGAACTGGAGGTGAAGAAGGCTCTGGCTCATAGGGTACGGTTTCACCCGCTAGTTTCAGGGCTGTTGACGTTGGTGTTTTTGATTGTAACTACCGATTGGCTTTTTTTTCCTCACGTAATCAGAACTGGTGCCGATGCAAAGAGTTTAGGAGAGTGTGCCATTATGGTGGATTTTGTGAAGACCAACGGTTCGTTATTGTATTATTGGCAGAAGAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MBOAT_2

Protein Analysis

364

Amino Acids

41.35

Weight (kDa)

9.61

Isoelectric Point (pI)

35.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MBOAT_2 PF13813 188 - 284 2.4e-16 Membrane bound O-acyl transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 182, 367, 1004
AccI GTMKAC 1 cut(s) 660
AccII CGCG 2 cut(s) 736, 820
AciI CCGC 4 cut(s) 263, 696, 736, 923
AclWI GGATC 2 cut(s) 47, 166
AcsI RAATTY 1 cut(s) 448
AcuI CTGAAG 1 cut(s) 584
AfaI GTAC 5 cut(s) 137, 429, 465, 494, 912
AfiI CCNNNNNNNGG 1 cut(s) 549
AgsI TTSAA 5 cut(s) 160, 223, 557, 574, 878
AluBI AGCT 3 cut(s) 299, 712, 793
AluI AGCT 3 cut(s) 299, 712, 793
Alw26I GTCTC 2 cut(s) 316, 640
AlwI GGATC 2 cut(s) 47, 166
Ama87I CYCGRG 2 cut(s) 560, 775
AoxI GGCC 3 cut(s) 250, 399, 613
ApeKI GCWGC 1 cut(s) 80
ApoI RAATTY 1 cut(s) 448
ArsI GACNNNNNNTTYG 2 cut(s) 1048, 1080
AspLEI GCGC 1 cut(s) 820
AspS9I GGNCC 2 cut(s) 251, 613
AsuHPI GGTGA 6 cut(s) 20, 252, 682, 760, 898, 911
AvaI CYCGRG 2 cut(s) 560, 775
BaeGI GKGCMC 1 cut(s) 187
BanI GGYRCC 3 cut(s) 182, 367, 1004
BauI CACGAG 2 cut(s) 788, 813
BbsI GAAGAC 1 cut(s) 1061
BbvCI CCTCAGC 1 cut(s) 190
BbvI GCAGC 1 cut(s) 92
BccI CCATC 6 cut(s) 183, 224, 317, 615, 672, 779
BceAI ACGGC 2 cut(s) 600, 738
BcgI CGANNNNNNTGC 2 cut(s) 714, 748
BcoDI GTCTC 2 cut(s) 316, 640
BfaI CTAG 2 cut(s) 503, 926
BfmI CTRYAG 1 cut(s) 684
BisI GCNGC 1 cut(s) 81
BlsI GCNGC 1 cut(s) 82
BmeT110I CYCGRG 2 cut(s) 560, 775
BmgT120I GGNCC 2 cut(s) 251, 613
BmiI GGNNCC 6 cut(s) 184, 369, 614, 626, 700, 1006
BmsI GCATC 2 cut(s) 62, 1000
BpiI GAAGAC 1 cut(s) 1061
BpmI CTGGAG 1 cut(s) 902
Bpu10I CCTNAGC 1 cut(s) 190
BpuEI CTTGAG 1 cut(s) 522
BsaAI YACGTR 1 cut(s) 991
BsaJI CCNNGG 1 cut(s) 496
BsaWI WCCGGW 1 cut(s) 667
Bsc4I CCNNNNNNNGG 1 cut(s) 549
Bse118I RCCGGY 1 cut(s) 751
Bse1I ACTGG 2 cut(s) 885, 1006
Bse3DI GCAATG 1 cut(s) 48
BseDI CCNNGG 1 cut(s) 496
BseGI GGATG 3 cut(s) 10, 454, 664
BseLI CCNNNNNNNGG 1 cut(s) 549
BseMI GCAATG 1 cut(s) 48
BseMII CTCAG 2 cut(s) 204, 512
BseNI ACTGG 2 cut(s) 885, 1006
BseRI GAGGAG 1 cut(s) 113
BseSI GKGCMC 1 cut(s) 187
BseXI GCAGC 1 cut(s) 92
Bsh1236I CGCG 2 cut(s) 736, 820
BshFI GGCC 3 cut(s) 252, 401, 615
BshNI GGYRCC 3 cut(s) 182, 367, 1004
BsiHKCI CYCGRG 2 cut(s) 560, 775
BsiSI CCGG 2 cut(s) 668, 752
BslFI GGGAC 2 cut(s) 463, 807
BslI CCNNNNNNNGG 1 cut(s) 549
BsmAI GTCTC 2 cut(s) 316, 640
BsmFI GGGAC 2 cut(s) 463, 807
BsnI GGCC 3 cut(s) 252, 401, 615
BsoBI CYCGRG 2 cut(s) 560, 775
Bsp1286I GDGCHC 1 cut(s) 187
Bsp143I GATC 2 cut(s) 39, 171
BspACI CCGC 4 cut(s) 263, 696, 736, 923
BspANI GGCC 3 cut(s) 252, 401, 615
BspCNI CTCAG 2 cut(s) 203, 513
BspFNI CGCG 2 cut(s) 736, 820
BspLI GGNNCC 6 cut(s) 184, 369, 614, 626, 700, 1006
BspPI GGATC 2 cut(s) 47, 166
BspQI GCTCTTC 1 cut(s) 306
BspT107I GGYRCC 3 cut(s) 182, 367, 1004
BsrDI GCAATG 1 cut(s) 48
BsrFI RCCGGY 1 cut(s) 751
BsrI ACTGG 2 cut(s) 885, 1006
BssAI RCCGGY 1 cut(s) 751
BssECI CCNNGG 1 cut(s) 496
BssMI GATC 2 cut(s) 39, 171
BssNAI GTATAC 1 cut(s) 661
BssSI CACGAG 2 cut(s) 788, 813
BssT1I CCWWGG 1 cut(s) 496
Bst1107I GTATAC 1 cut(s) 661
Bst2BI CACGAG 2 cut(s) 788, 813
Bst4CI ACNGT 4 cut(s) 347, 718, 915, 1064
Bst6I CTCTTC 3 cut(s) 239, 306, 603
BstBAI YACGTR 1 cut(s) 991
BstDEI CTNAG 2 cut(s) 190, 521
BstF5I GGATG 3 cut(s) 10, 454, 664
BstFNI CGCG 2 cut(s) 736, 820
BstHHI GCGC 1 cut(s) 820
BstKTI GATC 2 cut(s) 42, 174
BstMAI GTCTC 2 cut(s) 316, 640
BstMBI GATC 2 cut(s) 39, 171
BstMWI GCNNNNNNNGC 1 cut(s) 191
BstSFI CTRYAG 1 cut(s) 684
BstSLI GKGCMC 1 cut(s) 187
BstUI CGCG 2 cut(s) 736, 820
BstV1I GCAGC 1 cut(s) 92
BstV2I GAAGAC 1 cut(s) 1061
BstXI CCANNNNNNTGG 1 cut(s) 1042
BstZ17I GTATAC 1 cut(s) 661
BsuRI GGCC 3 cut(s) 252, 401, 615
BtsCI GGATG 3 cut(s) 10, 454, 664
CfoI GCGC 1 cut(s) 820
Cfr10I RCCGGY 1 cut(s) 751
Cfr13I GGNCC 2 cut(s) 251, 613
CseI GACGC 1 cut(s) 809
Csp6I GTAC 5 cut(s) 136, 428, 464, 493, 911
CviAII CATG 4 cut(s) 103, 148, 544, 784
CviQI GTAC 5 cut(s) 136, 428, 464, 493, 911
DdeI CTNAG 2 cut(s) 190, 521
DpnI GATC 2 cut(s) 41, 173
DpnII GATC 2 cut(s) 39, 171
Eam1104I CTCTTC 3 cut(s) 239, 306, 603
EarI CTCTTC 3 cut(s) 239, 306, 603
EciI GGCGGA 1 cut(s) 711
Eco130I CCWWGG 1 cut(s) 496
Eco147I AGGCCT 1 cut(s) 401
Eco57I CTGAAG 1 cut(s) 584
Eco88I CYCGRG 2 cut(s) 560, 775
EcoT14I CCWWGG 1 cut(s) 496
ErhI CCWWGG 1 cut(s) 496
FaeI CATG 4 cut(s) 106, 151, 547, 787
FaqI GGGAC 2 cut(s) 463, 807
FatI CATG 4 cut(s) 102, 147, 543, 783
FauI CCCGC 1 cut(s) 930
FauNDI CATATG 1 cut(s) 460
FblI GTMKAC 1 cut(s) 660
Fnu4HI GCNGC 1 cut(s) 81
FokI GGATG 3 cut(s) 17, 441, 651
Fsp4HI GCNGC 1 cut(s) 81
FspBI CTAG 2 cut(s) 503, 926
GlaI GCGC 1 cut(s) 819
GluI GCNGC 1 cut(s) 81
GsuI CTGGAG 1 cut(s) 902
HaeIII GGCC 3 cut(s) 252, 401, 615
HapII CCGG 2 cut(s) 668, 752
HgaI GACGC 1 cut(s) 809
HhaI GCGC 1 cut(s) 820
Hin1II CATG 4 cut(s) 106, 151, 547, 787
Hin6I GCGC 1 cut(s) 818
HinP1I GCGC 1 cut(s) 818
HincII GTYRAC 1 cut(s) 942
HindII GTYRAC 1 cut(s) 942
HinfI GANTC 4 cut(s) 87, 245, 324, 739
HpaII CCGG 2 cut(s) 668, 752
HphI GGTGA 6 cut(s) 20, 252, 682, 760, 898, 911
Hpy166II GTNNAC 2 cut(s) 661, 942
Hpy188I TCNGA 2 cut(s) 522, 998
Hpy188III TCNNGA 2 cut(s) 503, 602
Hpy8I GTNNAC 2 cut(s) 661, 942
HpyAV CCTTC 5 cut(s) 205, 391, 715, 741, 886
HpyCH4III ACNGT 4 cut(s) 347, 718, 915, 1064
HpyCH4IV ACGT 4 cut(s) 75, 807, 944, 990
HpyCH4V TGCA 4 cut(s) 53, 80, 787, 1013
HpyF10VI GCNNNNNNNGC 1 cut(s) 191
HpyF3I CTNAG 2 cut(s) 190, 521
HpySE526I ACGT 4 cut(s) 75, 807, 944, 990
Hsp92II CATG 4 cut(s) 106, 151, 547, 787
HspAI GCGC 1 cut(s) 818
Kzo9I GATC 2 cut(s) 39, 171
LguI GCTCTTC 1 cut(s) 306
LmnI GCTCC 2 cut(s) 156, 698
Lsp1109I GCAGC 1 cut(s) 92
LweI GCATC 2 cut(s) 62, 1000
MaeI CTAG 2 cut(s) 503, 926
MaeII ACGT 4 cut(s) 75, 807, 944, 990
MaeIII GTNAC 5 cut(s) 8, 347, 718, 808, 961
MalI GATC 2 cut(s) 41, 173
MboI GATC 2 cut(s) 39, 171
MboII GAAGA 7 cut(s) 211, 226, 293, 296, 590, 901, 1066
MfeI CAATTG 1 cut(s) 873
MhlI GDGCHC 1 cut(s) 187
MluCI AATT 6 cut(s) 381, 420, 448, 744, 873, 1090
MlyI GAGTC 3 cut(s) 239, 318, 733
MseI TTAA 1 cut(s) 318
MslI CAYNNNNRTG 5 cut(s) 32, 58, 180, 459, 1040
MspI CCGG 2 cut(s) 668, 752
MunI CAATTG 1 cut(s) 873
MvnI CGCG 2 cut(s) 736, 820
MwoI GCNNNNNNNGC 1 cut(s) 191
NdeI CATATG 1 cut(s) 460
NdeII GATC 2 cut(s) 39, 171
NlaIII CATG 4 cut(s) 106, 151, 547, 787
NlaIV GGNNCC 6 cut(s) 184, 369, 614, 626, 700, 1006
NmuCI GTSAC 1 cut(s) 8
PaeR7I CTCGAG 1 cut(s) 560
PceI AGGCCT 1 cut(s) 401
PciSI GCTCTTC 1 cut(s) 306
PfeI GAWTC 1 cut(s) 87
PkrI GCNGC 1 cut(s) 82
PleI GAGTC 3 cut(s) 239, 318, 733
PpsI GAGTC 3 cut(s) 239, 318, 733
Ppu21I YACGTR 1 cut(s) 991
PspN4I GGNNCC 6 cut(s) 184, 369, 614, 626, 700, 1006
PspPI GGNCC 2 cut(s) 251, 613
PspXI VCTCGAGB 1 cut(s) 560
RsaI GTAC 5 cut(s) 137, 429, 465, 494, 912
RsaNI GTAC 5 cut(s) 136, 428, 464, 493, 911
RseI CAYNNNNRTG 5 cut(s) 32, 58, 180, 459, 1040
SapI GCTCTTC 1 cut(s) 306
SaqAI TTAA 1 cut(s) 318
SatI GCNGC 1 cut(s) 81
Sau3AI GATC 2 cut(s) 39, 171
Sau96I GGNCC 2 cut(s) 251, 613
SchI GAGTC 3 cut(s) 239, 318, 733
SduI GDGCHC 1 cut(s) 187
SfaNI GCATC 2 cut(s) 62, 1000
SfcI CTRYAG 1 cut(s) 684
Sfr274I CTCGAG 1 cut(s) 560
SlaI CTCGAG 1 cut(s) 560
SmiMI CAYNNNNRTG 5 cut(s) 32, 58, 180, 459, 1040
SmlI CTYRAG 2 cut(s) 537, 560
SmoI CTYRAG 2 cut(s) 537, 560
Sse9I AATT 6 cut(s) 381, 420, 448, 744, 873, 1090
SseBI AGGCCT 1 cut(s) 401
SsiI CCGC 4 cut(s) 263, 696, 736, 923
SspMI CTAG 2 cut(s) 503, 926
StuI AGGCCT 1 cut(s) 401
StyI CCWWGG 1 cut(s) 496
TaaI ACNGT 4 cut(s) 347, 718, 915, 1064
TaiI ACGT 4 cut(s) 78, 810, 947, 993
TaqI TCGA 3 cut(s) 170, 561, 708
TasI AATT 6 cut(s) 381, 420, 448, 744, 873, 1090
TatI WGTACW 1 cut(s) 463
TfiI GAWTC 1 cut(s) 87
Tru1I TTAA 1 cut(s) 318
Tru9I TTAA 1 cut(s) 318
TseFI GTSAC 1 cut(s) 8
TseI GCWGC 1 cut(s) 80
Tsp45I GTSAC 1 cut(s) 8
TspDTI ATGAA 4 cut(s) 16, 277, 410, 772
XapI RAATTY 1 cut(s) 448
XbaI TCTAGA 1 cut(s) 502
XcmI CCANNNNNNNNNTGG 1 cut(s) 494
XhoI CTCGAG 1 cut(s) 560
XmiI GTMKAC 1 cut(s) 660
XspI CTAG 2 cut(s) 503, 926
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.