AT5G55340

long-chain-alcohol O-fatty-acyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0000676
Physical Location & Seq
Reverse (-)
22439714 .. 22441115
1402 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G55340.1

Sequence Viewer

Length: 1002 bp
ATGGATGAAGAACTCAAGAACTTGATCAAAGTATGGGTTTCTGCAATAATCTCGATATCTTATTGTTACTACATACCACCTAGAATCAAATCTGGTGCTCCTCGATTCCTCTCTGTTTCCCCTGTTCTTGCTCTGTTTCTTGTTCTTCCTCTGTTTTTCTCCTCTCTGCATTTATCTTTAATCACAGCGTTTTTCCTCACATGGCTTGCTAATTTCAAACTCATCCTCTTCTCCTTCGATAAAGGTCCTTTAATCCCAATTCCAACAAATTTCCCTCGATTCTTCTGCTTCACTTGCTTCCCCATCAAGGTTCAGCAAAACCCTAAATCTCAAAACCATTTGCCCAAATTGGTTTTCGCCATTAAACTTGCAATCTTTGCAGTGCTATTACATTTGTATAGCTACAGACAAAATCTGTCTCCGACTATACTATTAGGTCTCTATTTTGTGCATCTCTACTTAGAGATTGAGATTATATTAACGTTTGTTAAAGTTGTTGTTTTTATCTCTCTTGGCTGCGATCTTGAGCCACAGTCCAATAAACCGTACTTAGCCACATCTCTACAAGACTTCTGGGGTCGCCGGTGGAATCTCATGGTTCCGGCGATTCTCCGGCCAGCCGTTTACGCACCAATGCGGCGAGTCTCTGAACGCAAAATGAGTTCCGGTTGGGCTCTGTTTCCGGGGATTTTGGCAGCGTTTATCGTCTCCGGTTTGGTTCACGAATTGCTCTTCTTCTATTTGATACGTGAGATGCCTACAGGAGAAGTTACTCTGTTCTTTGTGTTACATGGCGTTTGTACTGCTGTAGAATTGGCGGTGAAGAAGAAAACGACGGTAGCACAGCGGTGGCGGTTGAGTCCGGGGGTGTCGCGGGTTCTCACGGTGGGGTTTGTGTTTGTGACTGGTGGTTGGTTGTTTACACCTCAGCTTAAAAGGAGCGGGGTGATGGAGAGATTCACATCTGAAGCTGTGTTGCTCGTTGAGTTCATTAAGCGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MBOAT_2

Protein Analysis

333

Amino Acids

38.04

Weight (kDa)

9.87

Isoelectric Point (pI)

46.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MBOAT_2 PF13813 176 - 263 6.3e-17 Membrane bound O-acyl transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 942
AccII CGCG 1 cut(s) 874
AciI CCGC 6 cut(s) 637, 818, 847, 853, 874, 942
AclI AACGTT 1 cut(s) 482
AcoI YGGCCR 1 cut(s) 614
AcsI RAATTY 1 cut(s) 268
AcuI CTGAAG 1 cut(s) 987
AfaI GTAC 2 cut(s) 548, 802
AfiI CCNNNNNNNGG 1 cut(s) 307
AgsI TTSAA 1 cut(s) 217
AjuI GAANNNNNNNTTGG 2 cut(s) 338, 370
AleI CACNNNNGTG 1 cut(s) 847
AluBI AGCT 3 cut(s) 402, 931, 971
AluI AGCT 3 cut(s) 402, 931, 971
Alw21I GWGCWC 1 cut(s) 100
Alw26I GTCTC 4 cut(s) 423, 443, 649, 712
AoxI GGCC 1 cut(s) 614
ApeKI GCWGC 2 cut(s) 516, 695
ApoI RAATTY 1 cut(s) 268
AspS9I GGNCC 1 cut(s) 245
AsuC2I CCSGG 2 cut(s) 684, 864
AsuHPI GGTGA 2 cut(s) 832, 958
AvaII GGWCC 1 cut(s) 245
BanII GRGCYC 1 cut(s) 676
Bbv12I GWGCWC 1 cut(s) 100
BbvCI CCTCAGC 1 cut(s) 927
BbvI GCAGC 2 cut(s) 503, 707
BccI CCATC 2 cut(s) 311, 943
BceAI ACGGC 1 cut(s) 605
BcgI CGANNNNNNTGC 4 cut(s) 33, 67, 267, 301
BclI TGATCA 1 cut(s) 24
BcnI CCSGG 2 cut(s) 684, 864
BcoDI GTCTC 4 cut(s) 423, 443, 649, 712
BfaI CTAG 1 cut(s) 81
BfmI CTRYAG 3 cut(s) 403, 759, 807
BisI GCNGC 3 cut(s) 517, 638, 696
BlsI GCNGC 3 cut(s) 518, 639, 697
Bme1390I CCNGG 2 cut(s) 684, 864
Bme18I GGWCC 1 cut(s) 245
BmgT120I GGNCC 1 cut(s) 245
BmiI GGNNCC 1 cut(s) 600
BmrFI CCNGG 2 cut(s) 684, 864
BmsI GCATC 2 cut(s) 460, 744
Bpu10I CCTNAGC 1 cut(s) 927
BpuEI CTTGAG 1 cut(s) 545
BpuMI CCSGG 2 cut(s) 684, 864
BsaAI YACGTR 1 cut(s) 749
BsaBI GATNNNNATC 1 cut(s) 961
BsaI GGTCTC 1 cut(s) 443
BsaJI CCNNGG 2 cut(s) 683, 863
BsaWI WCCGGW 2 cut(s) 665, 710
Bsc4I CCNNNNNNNGG 1 cut(s) 307
Bse118I RCCGGY 1 cut(s) 582
Bse1I ACTGG 1 cut(s) 910
Bse8I GATNNNNATC 1 cut(s) 961
BseDI CCNNGG 2 cut(s) 683, 863
BseGI GGATG 2 cut(s) 10, 222
BseJI GATNNNNATC 1 cut(s) 961
BseLI CCNNNNNNNGG 1 cut(s) 307
BseMII CTCAG 1 cut(s) 941
BseNI ACTGG 1 cut(s) 910
BseRI GAGGAG 2 cut(s) 90, 151
BseXI GCAGC 2 cut(s) 503, 707
Bsh1236I CGCG 1 cut(s) 874
BshFI GGCC 1 cut(s) 616
BsiHKAI GWGCWC 1 cut(s) 100
BsiSI CCGG 7 cut(s) 583, 602, 613, 666, 683, 711, 863
BslI CCNNNNNNNGG 1 cut(s) 307
BsmAI GTCTC 4 cut(s) 423, 443, 649, 712
BsmBI CGTCTC 1 cut(s) 712
BsnI GGCC 1 cut(s) 616
Bso31I GGTCTC 1 cut(s) 443
Bsp1286I GDGCHC 2 cut(s) 100, 676
Bsp143I GATC 2 cut(s) 24, 520
BspACI CCGC 6 cut(s) 637, 818, 847, 853, 874, 942
BspANI GGCC 1 cut(s) 616
BspCNI CTCAG 1 cut(s) 940
BspFNI CGCG 1 cut(s) 874
BspLI GGNNCC 1 cut(s) 600
BspQI GCTCTTC 1 cut(s) 737
BspTNI GGTCTC 1 cut(s) 443
BsrBI CCGCTC 1 cut(s) 942
BsrFI RCCGGY 1 cut(s) 582
BsrI ACTGG 1 cut(s) 910
BssAI RCCGGY 1 cut(s) 582
BssECI CCNNGG 2 cut(s) 683, 863
BssMI GATC 2 cut(s) 24, 520
Bst4CI ACNGT 4 cut(s) 534, 546, 838, 886
Bst6I CTCTTC 2 cut(s) 233, 737
BstAPI GCANNNNNTGC 1 cut(s) 377
BstBAI YACGTR 1 cut(s) 749
BstC8I GCNNGC 2 cut(s) 207, 618
BstDEI CTNAG 3 cut(s) 460, 550, 927
BstF5I GGATG 2 cut(s) 10, 222
BstFNI CGCG 1 cut(s) 874
BstKTI GATC 2 cut(s) 27, 523
BstMAI GTCTC 4 cut(s) 423, 443, 649, 712
BstMBI GATC 2 cut(s) 24, 520
BstMWI GCNNNNNNNGC 3 cut(s) 294, 377, 626
BstSCI CCNGG 2 cut(s) 682, 862
BstSFI CTRYAG 3 cut(s) 403, 759, 807
BstUI CGCG 1 cut(s) 874
BstV1I GCAGC 2 cut(s) 503, 707
BsuRI GGCC 1 cut(s) 616
BtsCI GGATG 2 cut(s) 10, 222
BtsI GCAGTG 1 cut(s) 387
BtsIMutI CAGTG 1 cut(s) 387
Cac8I GCNNGC 2 cut(s) 207, 618
Cfr10I RCCGGY 1 cut(s) 582
Cfr13I GGNCC 1 cut(s) 245
Csp6I GTAC 2 cut(s) 547, 801
CviAII CATG 3 cut(s) 201, 595, 791
CviQI GTAC 2 cut(s) 547, 801
DdeI CTNAG 3 cut(s) 460, 550, 927
DpnI GATC 2 cut(s) 26, 522
DpnII GATC 2 cut(s) 24, 520
EaeI YGGCCR 1 cut(s) 614
Eam1104I CTCTTC 2 cut(s) 233, 737
EarI CTCTTC 2 cut(s) 233, 737
Eco24I GRGCYC 1 cut(s) 676
Eco31I GGTCTC 1 cut(s) 443
Eco32I GATATC 1 cut(s) 57
Eco47I GGWCC 1 cut(s) 245
Eco57I CTGAAG 1 cut(s) 987
EcoO109I RGGNCCY 1 cut(s) 245
EcoRV GATATC 1 cut(s) 57
EcoT38I GRGCYC 1 cut(s) 676
Esp3I CGTCTC 1 cut(s) 712
FaeI CATG 3 cut(s) 204, 598, 794
FaiI YATR 8 cut(s) 34, 74, 202, 399, 428, 476, 596, 792
FatI CATG 3 cut(s) 200, 594, 790
FauI CCCGC 2 cut(s) 867, 935
FbaI TGATCA 1 cut(s) 24
Fnu4HI GCNGC 3 cut(s) 517, 638, 696
FokI GGATG 2 cut(s) 17, 209
FriOI GRGCYC 1 cut(s) 676
Fsp4HI GCNGC 3 cut(s) 517, 638, 696
FspBI CTAG 1 cut(s) 81
GluI GCNGC 3 cut(s) 517, 638, 696
HaeIII GGCC 1 cut(s) 616
HapII CCGG 7 cut(s) 583, 602, 613, 666, 683, 711, 863
Hin1II CATG 3 cut(s) 204, 598, 794
HinfI GANTC 8 cut(s) 84, 105, 279, 589, 607, 642, 859, 957
HpaII CCGG 7 cut(s) 583, 602, 613, 666, 683, 711, 863
HphI GGTGA 2 cut(s) 832, 958
Hpy166II GTNNAC 3 cut(s) 625, 721, 921
Hpy188I TCNGA 3 cut(s) 423, 649, 967
Hpy188III TCNNGA 4 cut(s) 16, 52, 524, 722
Hpy8I GTNNAC 3 cut(s) 625, 721, 921
Hpy99I CGWCG 1 cut(s) 838
HpyAV CCTTC 1 cut(s) 244
HpyCH4III ACNGT 4 cut(s) 534, 546, 838, 886
HpyCH4IV ACGT 2 cut(s) 482, 748
HpyCH4V TGCA 5 cut(s) 44, 169, 371, 380, 451
HpyF10VI GCNNNNNNNGC 3 cut(s) 294, 377, 626
HpyF3I CTNAG 3 cut(s) 460, 550, 927
HpySE526I ACGT 2 cut(s) 482, 748
Hsp92II CATG 3 cut(s) 204, 598, 794
Ksp22I TGATCA 1 cut(s) 24
Kzo9I GATC 2 cut(s) 24, 520
LguI GCTCTTC 1 cut(s) 737
LmnI GCTCC 2 cut(s) 103, 939
Lsp1109I GCAGC 2 cut(s) 503, 707
LweI GCATC 2 cut(s) 460, 744
MaeI CTAG 1 cut(s) 81
MaeII ACGT 2 cut(s) 482, 748
MaeIII GTNAC 4 cut(s) 65, 769, 786, 901
MalI GATC 2 cut(s) 26, 522
MbiI CCGCTC 1 cut(s) 942
MboI GATC 2 cut(s) 24, 520
MboII GAAGA 8 cut(s) 20, 137, 220, 274, 724, 727, 835, 838
MhlI GDGCHC 2 cut(s) 100, 676
MluCI AATT 6 cut(s) 211, 258, 268, 347, 725, 812
MlyI GAGTC 2 cut(s) 651, 868
MmeI TCCRAC 2 cut(s) 287, 446
MnlI CCTC 8 cut(s) 111, 119, 159, 172, 206, 236, 285, 936
MseI TTAA 7 cut(s) 179, 251, 363, 479, 489, 933, 993
MslI CAYNNNNRTG 1 cut(s) 847
MspA1I CMGCKG 1 cut(s) 847
MspI CCGG 7 cut(s) 583, 602, 613, 666, 683, 711, 863
MspR9I CCNGG 2 cut(s) 684, 864
MvnI CGCG 1 cut(s) 874
MwoI GCNNNNNNNGC 3 cut(s) 294, 377, 626
NciI CCSGG 2 cut(s) 684, 864
NdeII GATC 2 cut(s) 24, 520
NlaIII CATG 3 cut(s) 204, 598, 794
NlaIV GGNNCC 1 cut(s) 600
NmuCI GTSAC 1 cut(s) 901
OliI CACNNNNGTG 1 cut(s) 847
PciSI GCTCTTC 1 cut(s) 737
PfeI GAWTC 6 cut(s) 84, 105, 279, 589, 607, 957
PkrI GCNGC 3 cut(s) 518, 639, 697
PleI GAGTC 2 cut(s) 650, 867
PpsI GAGTC 2 cut(s) 650, 867
Ppu21I YACGTR 1 cut(s) 749
PpuMI RGGWCCY 1 cut(s) 245
Psp1406I AACGTT 1 cut(s) 482
Psp5II RGGWCCY 1 cut(s) 245
PspN4I GGNNCC 1 cut(s) 600
PspPI GGNCC 1 cut(s) 245
PspPPI RGGWCCY 1 cut(s) 245
RsaI GTAC 2 cut(s) 548, 802
RsaNI GTAC 2 cut(s) 547, 801
RseI CAYNNNNRTG 1 cut(s) 847
SapI GCTCTTC 1 cut(s) 737
SaqAI TTAA 7 cut(s) 179, 251, 363, 479, 489, 933, 993
SatI GCNGC 3 cut(s) 517, 638, 696
Sau3AI GATC 2 cut(s) 24, 520
Sau96I GGNCC 1 cut(s) 245
SchI GAGTC 2 cut(s) 651, 868
ScrFI CCNGG 2 cut(s) 684, 864
SduI GDGCHC 2 cut(s) 100, 676
SfaNI GCATC 2 cut(s) 460, 744
SfcI CTRYAG 3 cut(s) 403, 759, 807
SgrAI CRCCGGYG 1 cut(s) 582
SinI GGWCC 1 cut(s) 245
SmiMI CAYNNNNRTG 1 cut(s) 847
SmlI CTYRAG 2 cut(s) 14, 524
SmoI CTYRAG 2 cut(s) 14, 524
Sse9I AATT 6 cut(s) 211, 258, 268, 347, 725, 812
SsiI CCGC 6 cut(s) 637, 818, 847, 853, 874, 942
SspMI CTAG 1 cut(s) 81
StyD4I CCNGG 2 cut(s) 682, 862
TaaI ACNGT 4 cut(s) 534, 546, 838, 886
TaiI ACGT 2 cut(s) 485, 751
TaqI TCGA 4 cut(s) 53, 103, 237, 277
TasI AATT 6 cut(s) 211, 258, 268, 347, 725, 812
TatI WGTACW 1 cut(s) 800
TauI GCSGC 1 cut(s) 640
TfiI GAWTC 6 cut(s) 84, 105, 279, 589, 607, 957
Tru1I TTAA 7 cut(s) 179, 251, 363, 479, 489, 933, 993
Tru9I TTAA 7 cut(s) 179, 251, 363, 479, 489, 933, 993
TscAI CASTG 1 cut(s) 387
TseFI GTSAC 1 cut(s) 901
TseI GCWGC 2 cut(s) 516, 695
Tsp45I GTSAC 1 cut(s) 901
TspDTI ATGAA 2 cut(s) 21, 979
TspRI CASTG 1 cut(s) 387
VpaK11BI GGWCC 1 cut(s) 245
XapI RAATTY 1 cut(s) 268
XspI CTAG 1 cut(s) 81
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.