Rorug06G0024700

Long-chain-alcohol

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0000676
Physical Location & Seq
Reverse (-)
3010808 .. 3011575
768 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0024700.1

Sequence Viewer

Length: 564 bp
ATGACTCTCGAAAGAGAGCTCTCTCCTCTGCCTCCTCTCTATGCTGGTGGAGGCTGTGTACTTTCGATCTGGCAGGATGGCTTTGCCTCCTCATATGATCCAAACTGTGGTGGTGAAGAGGGGCCTCTTCGTCGAAACCTGCCTAAATTTCTCTCTCAAGCTTTTGCTGGTAGAAGTGATGGTGATTTGGCATTTGCCCGGCTCTACAGAGGCTGGGTTTTCCACTTTGATGGTGGCACTCTCTGGCATGGCTGGGTTAGGTTGTTTCTTTTGGAGGACAATGGGATCGATGGTGCTCTCGATTCTCCTTCACCGGCAGAGGTGGATGATGGGCTGGCATTGGACTTCGAGTATGGTGGTGGGGTTCGTTATCTTATGCTAGAATGGGATCCATTTCTGTCTGGGTTTCTTGTTGGTATGGATGGGGGTCTCCAGGAGGGTGCTATCAGTAATGGTGGTAGTGCAGGCGTCAAACTCCGGTGTGTGGTGTATGGCAGCGGCGGCTTAACTGCAGTCTCATCTAGGGTTTGCCCTAGTTTTGGGCCTTCATTCTTTTGTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MBOAT_2

Protein Analysis

187

Amino Acids

20.0

Weight (kDa)

4.47

Isoelectric Point (pI)

46.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 147
AccB7I CCANNNNNTGG 1 cut(s) 107
AciI CCGC 2 cut(s) 498, 501
AclWI GGATC 4 cut(s) 92, 293, 383, 396
AcsI RAATTY 1 cut(s) 146
AcyI GRCGYC 1 cut(s) 468
AfaI GTAC 1 cut(s) 60
AfiI CCNNNNNNNGG 3 cut(s) 107, 484, 539
AjnI CCWGG 1 cut(s) 432
AluBI AGCT 2 cut(s) 19, 161
AluI AGCT 2 cut(s) 19, 161
Alw21I GWGCWC 2 cut(s) 21, 298
Alw26I GTCTC 2 cut(s) 434, 520
AlwI GGATC 4 cut(s) 92, 293, 383, 396
AlwNI CAGNNNCTG 1 cut(s) 213
AoxI GGCC 2 cut(s) 122, 542
ApeKI GCWGC 1 cut(s) 495
ApoI RAATTY 1 cut(s) 146
AspS9I GGNCC 2 cut(s) 122, 542
AsuC2I CCSGG 1 cut(s) 199
AsuHPI GGTGA 3 cut(s) 125, 194, 303
BamHI GGATCC 1 cut(s) 388
BanII GRGCYC 1 cut(s) 21
Bbv12I GWGCWC 2 cut(s) 21, 298
BbvI GCAGC 1 cut(s) 507
BccI CCATC 6 cut(s) 71, 173, 224, 284, 323, 416
BciT130I CCWGG 1 cut(s) 434
BcnI CCSGG 1 cut(s) 199
BcoDI GTCTC 2 cut(s) 434, 520
BfaI CTAG 3 cut(s) 380, 522, 534
BfmI CTRYAG 2 cut(s) 205, 510
BfuAI ACCTGC 1 cut(s) 147
BisI GCNGC 3 cut(s) 496, 499, 502
BlsI GCNGC 3 cut(s) 497, 500, 503
Bme1390I CCNGG 2 cut(s) 199, 434
BmgT120I GGNCC 2 cut(s) 122, 542
BmiI GGNNCC 2 cut(s) 123, 390
BmrFI CCNGG 2 cut(s) 199, 434
BpmI CTGGAG 1 cut(s) 416
BpuEI CTTGAG 1 cut(s) 141
BpuMI CCSGG 1 cut(s) 199
Bsa29I ATCGAT 1 cut(s) 288
BsaHI GRCGYC 1 cut(s) 468
BsaI GGTCTC 1 cut(s) 434
BsaWI WCCGGW 1 cut(s) 477
BsaXI ACNNNNNCTCC 2 cut(s) 42, 72
Bsc4I CCNNNNNNNGG 3 cut(s) 107, 484, 539
Bse118I RCCGGY 1 cut(s) 313
BseBI CCWGG 1 cut(s) 434
BseCI ATCGAT 1 cut(s) 288
BseGI GGATG 3 cut(s) 82, 331, 427
BseLI CCNNNNNNNGG 3 cut(s) 107, 484, 539
BseRI GAGGAG 3 cut(s) 15, 24, 79
BseXI GCAGC 1 cut(s) 507
BseYI CCCAGC 2 cut(s) 213, 252
BsgI GTGCAG 1 cut(s) 483
BshFI GGCC 2 cut(s) 124, 544
BshVI ATCGAT 1 cut(s) 288
BsiHKAI GWGCWC 2 cut(s) 21, 298
BsiSI CCGG 3 cut(s) 199, 314, 478
BslI CCNNNNNNNGG 3 cut(s) 107, 484, 539
BsmAI GTCTC 2 cut(s) 434, 520
BsnI GGCC 2 cut(s) 124, 544
Bso31I GGTCTC 1 cut(s) 434
Bsp1286I GDGCHC 2 cut(s) 21, 298
Bsp143I GATC 4 cut(s) 66, 97, 285, 388
BspACI CCGC 2 cut(s) 498, 501
BspANI GGCC 2 cut(s) 124, 544
BspDI ATCGAT 1 cut(s) 288
BspLI GGNNCC 2 cut(s) 123, 390
BspMAI CTGCAG 1 cut(s) 514
BspMI ACCTGC 1 cut(s) 147
BspPI GGATC 4 cut(s) 92, 293, 383, 396
BspTNI GGTCTC 1 cut(s) 434
BsrFI RCCGGY 1 cut(s) 313
BssAI RCCGGY 1 cut(s) 313
BssMI GATC 4 cut(s) 66, 97, 285, 388
BssNI GRCGYC 1 cut(s) 468
Bst2UI CCWGG 1 cut(s) 434
Bst4CI ACNGT 1 cut(s) 107
Bst6I CTCTTC 2 cut(s) 111, 132
BstACI GRCGYC 1 cut(s) 468
BstC8I GCNNGC 2 cut(s) 336, 466
BstF5I GGATG 3 cut(s) 82, 331, 427
BstKTI GATC 4 cut(s) 69, 100, 288, 391
BstMAI GTCTC 2 cut(s) 434, 520
BstMBI GATC 4 cut(s) 66, 97, 285, 388
BstMWI GCNNNNNNNGC 1 cut(s) 501
BstNI CCWGG 1 cut(s) 434
BstSCI CCNGG 2 cut(s) 197, 432
BstSFI CTRYAG 2 cut(s) 205, 510
BstV1I GCAGC 1 cut(s) 507
BstX2I RGATCY 1 cut(s) 388
BstXI CCANNNNNNTGG 1 cut(s) 230
BstYI RGATCY 1 cut(s) 388
Bsu15I ATCGAT 1 cut(s) 288
BsuRI GGCC 2 cut(s) 124, 544
BsuTUI ATCGAT 1 cut(s) 288
BtsCI GGATG 3 cut(s) 82, 331, 427
BveI ACCTGC 1 cut(s) 147
Cac8I GCNNGC 2 cut(s) 336, 466
CaiI CAGNNNCTG 1 cut(s) 213
Cfr10I RCCGGY 1 cut(s) 313
Cfr13I GGNCC 2 cut(s) 122, 542
ClaI ATCGAT 1 cut(s) 288
CseI GACGC 1 cut(s) 457
Csp6I GTAC 1 cut(s) 59
CviAII CATG 1 cut(s) 248
CviQI GTAC 1 cut(s) 59
DpnI GATC 4 cut(s) 68, 99, 287, 390
DpnII GATC 4 cut(s) 66, 97, 285, 388
Eam1104I CTCTTC 2 cut(s) 111, 132
EarI CTCTTC 2 cut(s) 111, 132
Ecl136II GAGCTC 1 cut(s) 19
Eco24I GRGCYC 1 cut(s) 21
Eco31I GGTCTC 1 cut(s) 434
Eco53kI GAGCTC 1 cut(s) 19
EcoICRI GAGCTC 1 cut(s) 19
EcoO109I RGGNCCY 1 cut(s) 122
EcoRII CCWGG 1 cut(s) 432
EcoT38I GRGCYC 1 cut(s) 21
FaeI CATG 1 cut(s) 251
FaiI YATR 8 cut(s) 42, 94, 96, 249, 354, 377, 419, 492
FatI CATG 1 cut(s) 247
FauNDI CATATG 1 cut(s) 94
Fnu4HI GCNGC 3 cut(s) 496, 499, 502
FokI GGATG 3 cut(s) 89, 338, 434
FriOI GRGCYC 1 cut(s) 21
Fsp4HI GCNGC 3 cut(s) 496, 499, 502
FspBI CTAG 3 cut(s) 380, 522, 534
GluI GCNGC 3 cut(s) 496, 499, 502
GsaI CCCAGC 2 cut(s) 217, 256
GsuI CTGGAG 1 cut(s) 416
HaeIII GGCC 2 cut(s) 124, 544
HapII CCGG 3 cut(s) 199, 314, 478
HgaI GACGC 1 cut(s) 457
Hin1I GRCGYC 1 cut(s) 468
Hin1II CATG 1 cut(s) 251
HindIII AAGCTT 1 cut(s) 159
HinfI GANTC 2 cut(s) 4, 302
HpaII CCGG 3 cut(s) 199, 314, 478
HphI GGTGA 3 cut(s) 125, 194, 303
Hpy166II GTNNAC 1 cut(s) 59
Hpy188III TCNNGA 2 cut(s) 8, 299
Hpy8I GTNNAC 1 cut(s) 59
Hpy99I CGWCG 1 cut(s) 135
HpyAV CCTTC 2 cut(s) 318, 555
HpyCH4III ACNGT 1 cut(s) 107
HpyCH4V TGCA 2 cut(s) 464, 512
HpyF10VI GCNNNNNNNGC 1 cut(s) 501
Hsp92I GRCGYC 1 cut(s) 468
Hsp92II CATG 1 cut(s) 251
Kzo9I GATC 4 cut(s) 66, 97, 285, 388
Lsp1109I GCAGC 1 cut(s) 507
MaeI CTAG 3 cut(s) 380, 522, 534
MalI GATC 4 cut(s) 68, 99, 287, 390
MboI GATC 4 cut(s) 66, 97, 285, 388
MboII GAAGA 2 cut(s) 119, 128
MflI RGATCY 1 cut(s) 388
MhlI GDGCHC 2 cut(s) 21, 298
MluCI AATT 1 cut(s) 146
MseI TTAA 1 cut(s) 506
MslI CAYNNNNRTG 1 cut(s) 228
MspA1I CMGCKG 1 cut(s) 498
MspI CCGG 3 cut(s) 199, 314, 478
MspR9I CCNGG 2 cut(s) 199, 434
MvaI CCWGG 1 cut(s) 434
MwoI GCNNNNNNNGC 1 cut(s) 501
NciI CCSGG 1 cut(s) 199
NdeI CATATG 1 cut(s) 94
NdeII GATC 4 cut(s) 66, 97, 285, 388
NlaIII CATG 1 cut(s) 251
NlaIV GGNNCC 2 cut(s) 123, 390
PfeI GAWTC 1 cut(s) 302
PflMI CCANNNNNTGG 1 cut(s) 107
PfoI TCCNGGA 1 cut(s) 432
PkrI GCNGC 3 cut(s) 497, 500, 503
Psp124BI GAGCTC 1 cut(s) 21
Psp6I CCWGG 1 cut(s) 432
PspFI CCCAGC 2 cut(s) 213, 252
PspGI CCWGG 1 cut(s) 432
PspN4I GGNNCC 2 cut(s) 123, 390
PspPI GGNCC 2 cut(s) 122, 542
PstI CTGCAG 1 cut(s) 514
PstNI CAGNNNCTG 1 cut(s) 213
PsuI RGATCY 1 cut(s) 388
RsaI GTAC 1 cut(s) 60
RsaNI GTAC 1 cut(s) 59
RseI CAYNNNNRTG 1 cut(s) 228
SacI GAGCTC 1 cut(s) 21
SaqAI TTAA 1 cut(s) 506
SatI GCNGC 3 cut(s) 496, 499, 502
Sau3AI GATC 4 cut(s) 66, 97, 285, 388
Sau96I GGNCC 2 cut(s) 122, 542
ScrFI CCNGG 2 cut(s) 199, 434
SduI GDGCHC 2 cut(s) 21, 298
SetI ASST 5 cut(s) 21, 141, 163, 263, 324
SfcI CTRYAG 2 cut(s) 205, 510
SmiMI CAYNNNNRTG 1 cut(s) 228
SmlI CTYRAG 1 cut(s) 156
SmoI CTYRAG 1 cut(s) 156
Sse9I AATT 1 cut(s) 146
SsiI CCGC 2 cut(s) 498, 501
SspMI CTAG 3 cut(s) 380, 522, 534
SstI GAGCTC 1 cut(s) 21
StyD4I CCNGG 2 cut(s) 197, 432
TaaI ACNGT 1 cut(s) 107
TaqI TCGA 6 cut(s) 9, 65, 133, 288, 300, 348
TasI AATT 1 cut(s) 146
TatI WGTACW 1 cut(s) 58
TauI GCSGC 2 cut(s) 501, 504
TfiI GAWTC 1 cut(s) 302
Tru1I TTAA 1 cut(s) 506
Tru9I TTAA 1 cut(s) 506
TseI GCWGC 1 cut(s) 495
TspDTI ATGAA 1 cut(s) 537
Van91I CCANNNNNTGG 1 cut(s) 107
XapI RAATTY 1 cut(s) 146
XcmI CCANNNNNNNNNTGG 1 cut(s) 230
XspI CTAG 3 cut(s) 380, 522, 534
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.