Rroxscaffold_7G00201820

Long-chain-alcohol

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000676
Physical Location & Seq
Reverse (-)
49629213 .. 49632395
3183 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00201820.1

Sequence Viewer

Length: 990 bp
ATGGCAGTGGCCGTGTCGAGGTGTCGTGGCGACGGGAGGCGTCACGACGACAGTGTGTATGACGGCTTTGGCTCAGGGGAGTGGAGGCTGGGATTGGATTGGGCCAGACCGGTTGGACTTGGGGCTTATCTTTCCCATTGGACTTTGTGGGCTATTTTCACCGTATTTTGGACTTCCCCCTTCATTTCAATAGCTCTTCTTCCCATCAACATTAAGAGACTCCCCAAAAGGCCTCGCTACGGTTACACTATCACAAAATTGGTGTCAAACAAGACAGCTTTGTGGGCATTGAAGGCCTTGCTTTTGGGTGAAATAATTCATGTACGCAAGGATTATAGACAGAATTTACATCCCTATGTACTCACATCCTTGTCCCTTTCCCACCTGTACCTTGGTCTAGAAATAGGCTTTGCTCTGAGTGTAGTCTTGCCTCAAGCCATGTTTGGGTTTGAACTCGAGCCACACTTCAACGAGCCTTACTTTTCCACCTCTCTTCAGGACTTTTGGGGCCGTAGATGGAACCTTGCAGTCTCAAACACTCTACGCCCCCTTGTATACCATCCCATAAGGCGTATATCTACAGGCAAGAGCGGAGCCACCTACGAGCCAATAGTTACCTCAAAACCTCCGCGGGCTCCAGTTCTGCCGGTCATCTCTGCTTTCACCATCTCGGGTCTAATGCACGAGCTCTTCTTTTACTACGTCACTCGTGCGCGTCCCACCGGGGAAATGATGTGCTTCTTTGTCCTACAAGGTGTGTGCTTGGCAATTGAACTCGAGGTGAAGAAGGCGTTGGCTCATAGGGTACGGTTTCACCCGCTAGTTTCAGGGCTGTTGACGTTGGTGTTTTTGATTGTCACTACTGACTGGCTTCTTTTCCCTCACATAATCAGAACTGGTGCGGATGCAAAGAGTTTAGAAGAGTTTGCCAGTATGGTGGATTTTGTGAAGGCCAACATTTCCCCATTGTATTATTGGCAGAAGAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MBOAT_2

Protein Analysis

329

Amino Acids

37.48

Weight (kDa)

9.66

Isoelectric Point (pI)

40.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MBOAT_2 PF13813 153 - 249 1.3e-16 Membrane bound O-acyl transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 591
AccI GTMKAC 1 cut(s) 555
AccII CGCG 2 cut(s) 631, 715
AciI CCGC 5 cut(s) 591, 629, 631, 818, 902
AcoI YGGCCR 1 cut(s) 9
AcsI RAATTY 1 cut(s) 343
AcuI CTGAAG 1 cut(s) 479
AcyI GRCGYC 1 cut(s) 40
AfaI GTAC 4 cut(s) 324, 360, 389, 807
AfiI CCNNNNNNNGG 4 cut(s) 18, 168, 239, 444
AgeI ACCGGT 1 cut(s) 109
AgsI TTSAA 5 cut(s) 189, 292, 452, 469, 773
AjuI GAANNNNNNNTTGG 2 cut(s) 776, 808
AluBI AGCT 3 cut(s) 194, 278, 688
AluI AGCT 3 cut(s) 194, 278, 688
Alw21I GWGCWC 1 cut(s) 690
Alw26I GTCTC 2 cut(s) 211, 535
Ama87I CYCGRG 3 cut(s) 455, 670, 776
AoxI GGCC 6 cut(s) 9, 102, 230, 294, 508, 951
ApoI RAATTY 1 cut(s) 343
ArsI GACNNNNNNTTYG 2 cut(s) 248, 280
AsiGI ACCGGT 1 cut(s) 109
Asp700I GAANNNNTTC 1 cut(s) 315
AspLEI GCGC 1 cut(s) 715
AspS9I GGNCC 2 cut(s) 102, 508
AsuC2I CCSGG 1 cut(s) 724
AsuHPI GGTGA 5 cut(s) 151, 320, 655, 793, 806
AvaI CYCGRG 3 cut(s) 455, 670, 776
BanII GRGCYC 2 cut(s) 637, 690
BauI CACGAG 2 cut(s) 683, 708
Bbv12I GWGCWC 1 cut(s) 690
BccI CCATC 4 cut(s) 212, 510, 567, 674
BceAI ACGGC 2 cut(s) 79, 495
BcnI CCSGG 1 cut(s) 724
BcoDI GTCTC 2 cut(s) 211, 535
BfaI CTAG 2 cut(s) 398, 821
BfmI CTRYAG 1 cut(s) 579
Bme1390I CCNGG 1 cut(s) 724
BmeT110I CYCGRG 3 cut(s) 455, 670, 776
BmgT120I GGNCC 2 cut(s) 102, 508
BmiI GGNNCC 4 cut(s) 509, 521, 595, 636
BmrFI CCNGG 1 cut(s) 724
BmsI GCATC 1 cut(s) 895
BpmI CTGGAG 1 cut(s) 621
Bpu10I CCTNAGC 1 cut(s) 73
BpuEI CTTGAG 1 cut(s) 417
BpuMI CCSGG 1 cut(s) 724
BsaHI GRCGYC 1 cut(s) 40
BsaJI CCNNGG 3 cut(s) 391, 629, 723
BsaWI WCCGGW 1 cut(s) 109
Bsc4I CCNNNNNNNGG 4 cut(s) 18, 168, 239, 444
Bse118I RCCGGY 2 cut(s) 109, 646
Bse1I ACTGG 4 cut(s) 638, 872, 901, 930
BseDI CCNNGG 3 cut(s) 391, 629, 723
BseGI GGATG 4 cut(s) 349, 365, 559, 910
BseLI CCNNNNNNNGG 4 cut(s) 18, 168, 239, 444
BseMII CTCAG 2 cut(s) 87, 407
BseNI ACTGG 4 cut(s) 638, 872, 901, 930
BseYI CCCAGC 1 cut(s) 88
Bsh1236I CGCG 2 cut(s) 631, 715
BshFI GGCC 6 cut(s) 11, 104, 232, 296, 510, 953
BshTI ACCGGT 1 cut(s) 109
BsiHKAI GWGCWC 1 cut(s) 690
BsiHKCI CYCGRG 3 cut(s) 455, 670, 776
BsiSI CCGG 3 cut(s) 110, 647, 723
BslFI GGGAC 2 cut(s) 358, 702
BslI CCNNNNNNNGG 4 cut(s) 18, 168, 239, 444
BsmAI GTCTC 2 cut(s) 211, 535
BsmFI GGGAC 2 cut(s) 358, 702
BsnI GGCC 6 cut(s) 11, 104, 232, 296, 510, 953
BsoBI CYCGRG 3 cut(s) 455, 670, 776
Bsp1286I GDGCHC 2 cut(s) 637, 690
BspACI CCGC 5 cut(s) 591, 629, 631, 818, 902
BspANI GGCC 6 cut(s) 11, 104, 232, 296, 510, 953
BspCNI CTCAG 2 cut(s) 86, 408
BspFNI CGCG 2 cut(s) 631, 715
BspLI GGNNCC 4 cut(s) 509, 521, 595, 636
BspQI GCTCTTC 2 cut(s) 201, 695
BsrBI CCGCTC 1 cut(s) 591
BsrFI RCCGGY 2 cut(s) 109, 646
BsrI ACTGG 4 cut(s) 638, 872, 901, 930
BssAI RCCGGY 2 cut(s) 109, 646
BssECI CCNNGG 3 cut(s) 391, 629, 723
BssNAI GTATAC 1 cut(s) 556
BssNI GRCGYC 1 cut(s) 40
BssSI CACGAG 2 cut(s) 683, 708
BssT1I CCWWGG 1 cut(s) 391
Bst1107I GTATAC 1 cut(s) 556
Bst2BI CACGAG 2 cut(s) 683, 708
Bst4CI ACNGT 4 cut(s) 53, 163, 242, 810
Bst6I CTCTTC 5 cut(s) 201, 498, 695, 915, 977
BstACI GRCGYC 1 cut(s) 40
BstC8I GCNNGC 1 cut(s) 633
BstDEI CTNAG 2 cut(s) 73, 416
BstDSI CCRYGG 1 cut(s) 629
BstF5I GGATG 4 cut(s) 349, 365, 559, 910
BstFNI CGCG 2 cut(s) 631, 715
BstHHI GCGC 1 cut(s) 715
BstMAI GTCTC 2 cut(s) 211, 535
BstMWI GCNNNNNNNGC 2 cut(s) 284, 293
BstSCI CCNGG 1 cut(s) 722
BstSFI CTRYAG 1 cut(s) 579
BstUI CGCG 2 cut(s) 631, 715
BstXI CCANNNNNNTGG 1 cut(s) 937
BstZ17I GTATAC 1 cut(s) 556
BsuRI GGCC 6 cut(s) 11, 104, 232, 296, 510, 953
BtgI CCRYGG 1 cut(s) 629
BtsCI GGATG 4 cut(s) 349, 365, 559, 910
BtsI GCAGTG 1 cut(s) 12
BtsIMutI CAGTG 2 cut(s) 12, 58
Cac8I GCNNGC 1 cut(s) 633
CfoI GCGC 1 cut(s) 715
Cfr10I RCCGGY 2 cut(s) 109, 646
Cfr13I GGNCC 2 cut(s) 102, 508
Cfr42I CCGCGG 1 cut(s) 632
CseI GACGC 2 cut(s) 29, 704
Csp6I GTAC 4 cut(s) 323, 359, 388, 806
CspAI ACCGGT 1 cut(s) 109
CviAII CATG 2 cut(s) 320, 439
CviQI GTAC 4 cut(s) 323, 359, 388, 806
DdeI CTNAG 2 cut(s) 73, 416
EaeI YGGCCR 1 cut(s) 9
Eam1104I CTCTTC 5 cut(s) 201, 498, 695, 915, 977
EarI CTCTTC 5 cut(s) 201, 498, 695, 915, 977
Ecl136II GAGCTC 1 cut(s) 688
Eco130I CCWWGG 1 cut(s) 391
Eco147I AGGCCT 2 cut(s) 232, 296
Eco24I GRGCYC 2 cut(s) 637, 690
Eco53kI GAGCTC 1 cut(s) 688
Eco57I CTGAAG 1 cut(s) 479
Eco88I CYCGRG 3 cut(s) 455, 670, 776
EcoICRI GAGCTC 1 cut(s) 688
EcoT14I CCWWGG 1 cut(s) 391
EcoT38I GRGCYC 2 cut(s) 637, 690
ErhI CCWWGG 1 cut(s) 391
FaeI CATG 2 cut(s) 323, 442
FaqI GGGAC 2 cut(s) 358, 702
FatI CATG 2 cut(s) 319, 438
FauI CCCGC 2 cut(s) 624, 825
FblI GTMKAC 1 cut(s) 555
FokI GGATG 4 cut(s) 336, 352, 546, 917
FriOI GRGCYC 2 cut(s) 637, 690
FspBI CTAG 2 cut(s) 398, 821
GlaI GCGC 1 cut(s) 714
GsaI CCCAGC 1 cut(s) 92
GsuI CTGGAG 1 cut(s) 621
HaeIII GGCC 6 cut(s) 11, 104, 232, 296, 510, 953
HapII CCGG 3 cut(s) 110, 647, 723
HgaI GACGC 2 cut(s) 29, 704
HhaI GCGC 1 cut(s) 715
Hin1I GRCGYC 1 cut(s) 40
Hin1II CATG 2 cut(s) 323, 442
Hin6I GCGC 1 cut(s) 713
HinP1I GCGC 1 cut(s) 713
HincII GTYRAC 1 cut(s) 837
HindII GTYRAC 1 cut(s) 837
HinfI GANTC 1 cut(s) 219
HpaII CCGG 3 cut(s) 110, 647, 723
HphI GGTGA 5 cut(s) 151, 320, 655, 793, 806
Hpy166II GTNNAC 2 cut(s) 556, 837
Hpy188I TCNGA 2 cut(s) 417, 893
Hpy188III TCNNGA 3 cut(s) 44, 398, 497
Hpy8I GTNNAC 2 cut(s) 556, 837
Hpy99I CGWCG 2 cut(s) 35, 50
HpyAV CCTTC 4 cut(s) 190, 286, 781, 943
HpyCH4III ACNGT 4 cut(s) 53, 163, 242, 810
HpyCH4IV ACGT 2 cut(s) 702, 839
HpyCH4V TGCA 3 cut(s) 527, 682, 908
HpyF10VI GCNNNNNNNGC 2 cut(s) 284, 293
HpyF3I CTNAG 2 cut(s) 73, 416
HpySE526I ACGT 2 cut(s) 702, 839
Hsp92I GRCGYC 1 cut(s) 40
Hsp92II CATG 2 cut(s) 323, 442
HspAI GCGC 1 cut(s) 713
KspI CCGCGG 1 cut(s) 632
LguI GCTCTTC 2 cut(s) 201, 695
LmnI GCTCC 2 cut(s) 593, 640
LweI GCATC 1 cut(s) 895
MaeI CTAG 2 cut(s) 398, 821
MaeII ACGT 2 cut(s) 702, 839
MaeIII GTNAC 5 cut(s) 41, 242, 613, 703, 856
MbiI CCGCTC 1 cut(s) 591
MboII GAAGA 6 cut(s) 188, 191, 485, 682, 796, 932
MfeI CAATTG 1 cut(s) 768
MhlI GDGCHC 2 cut(s) 637, 690
MluCI AATT 4 cut(s) 257, 315, 343, 768
MlyI GAGTC 1 cut(s) 213
MmeI TCCRAC 1 cut(s) 94
MroXI GAANNNNTTC 1 cut(s) 315
MseI TTAA 1 cut(s) 213
MslI CAYNNNNRTG 1 cut(s) 354
MspA1I CMGCKG 1 cut(s) 631
MspI CCGG 3 cut(s) 110, 647, 723
MspR9I CCNGG 1 cut(s) 724
MunI CAATTG 1 cut(s) 768
MvnI CGCG 2 cut(s) 631, 715
MwoI GCNNNNNNNGC 2 cut(s) 284, 293
NciI CCSGG 1 cut(s) 724
NlaIII CATG 2 cut(s) 323, 442
NlaIV GGNNCC 4 cut(s) 509, 521, 595, 636
NmuCI GTSAC 3 cut(s) 41, 703, 856
PaeR7I CTCGAG 2 cut(s) 455, 776
PceI AGGCCT 2 cut(s) 232, 296
PciSI GCTCTTC 2 cut(s) 201, 695
PdmI GAANNNNTTC 1 cut(s) 315
PinAI ACCGGT 1 cut(s) 109
PleI GAGTC 1 cut(s) 213
PpsI GAGTC 1 cut(s) 213
Psp124BI GAGCTC 1 cut(s) 690
PspFI CCCAGC 1 cut(s) 88
PspN4I GGNNCC 4 cut(s) 509, 521, 595, 636
PspPI GGNCC 2 cut(s) 102, 508
PspXI VCTCGAGB 2 cut(s) 455, 776
RsaI GTAC 4 cut(s) 324, 360, 389, 807
RsaNI GTAC 4 cut(s) 323, 359, 388, 806
RseI CAYNNNNRTG 1 cut(s) 354
SacI GAGCTC 1 cut(s) 690
SacII CCGCGG 1 cut(s) 632
SapI GCTCTTC 2 cut(s) 201, 695
SaqAI TTAA 1 cut(s) 213
Sau96I GGNCC 2 cut(s) 102, 508
SchI GAGTC 1 cut(s) 213
ScrFI CCNGG 1 cut(s) 724
SduI GDGCHC 2 cut(s) 637, 690
SfaNI GCATC 1 cut(s) 895
SfcI CTRYAG 1 cut(s) 579
Sfr274I CTCGAG 2 cut(s) 455, 776
Sfr303I CCGCGG 1 cut(s) 632
SgrBI CCGCGG 1 cut(s) 632
SlaI CTCGAG 2 cut(s) 455, 776
SmiMI CAYNNNNRTG 1 cut(s) 354
SmlI CTYRAG 3 cut(s) 432, 455, 776
SmoI CTYRAG 3 cut(s) 432, 455, 776
Sse9I AATT 4 cut(s) 257, 315, 343, 768
SseBI AGGCCT 2 cut(s) 232, 296
SsiI CCGC 5 cut(s) 591, 629, 631, 818, 902
SspMI CTAG 2 cut(s) 398, 821
SstI GAGCTC 1 cut(s) 690
StuI AGGCCT 2 cut(s) 232, 296
StyD4I CCNGG 1 cut(s) 722
StyI CCWWGG 1 cut(s) 391
TaaI ACNGT 4 cut(s) 53, 163, 242, 810
TaiI ACGT 2 cut(s) 705, 842
TaqI TCGA 3 cut(s) 17, 456, 777
TasI AATT 4 cut(s) 257, 315, 343, 768
TatI WGTACW 1 cut(s) 358
Tru1I TTAA 1 cut(s) 213
Tru9I TTAA 1 cut(s) 213
TscAI CASTG 2 cut(s) 12, 58
TseFI GTSAC 3 cut(s) 41, 703, 856
Tsp45I GTSAC 3 cut(s) 41, 703, 856
TspDTI ATGAA 2 cut(s) 172, 308
TspRI CASTG 2 cut(s) 12, 58
XapI RAATTY 1 cut(s) 343
XbaI TCTAGA 1 cut(s) 397
XcmI CCANNNNNNNNNTGG 2 cut(s) 389, 972
XhoI CTCGAG 2 cut(s) 455, 776
XmiI GTMKAC 1 cut(s) 555
XmnI GAANNNNTTC 1 cut(s) 315
XspI CTAG 2 cut(s) 398, 821
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.