AT5G55350

Membrane bound O-acyl transferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0000676
Physical Location & Seq
Reverse (-)
22442269 .. 22443437
1169 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G55350.1

Sequence Viewer

Length: 1038 bp
ATGGAGGAAGAACTCATGAGCTTAATCAAAGTATGGGTTTATGCAATAATCTCCATATCTTACTGTTACTACACATCAACAAGAATCAAATCTGGTGTTTTTCGATTACTATCTGTTCTTCCTGTTTGTGTTCTGTTTCTTGTTCTCCCTCTGTTTGTTTCCTCTGTTCACTTTTCTGGTTCCACAGCATTTTTCCTCTCATGGCTTGCCAATTTCAAACTAATCCTCTTCTCCTTCGACCAAGGTCCACTTTTCCCAGTTCCCTCAAATCTCTCCCGATTCGTCTGCTTCACTTGCTTCCCCATCAAGCTTCAACAAAACCCTAAACCTCAAAATCAAATGCCTAAATGGGGTTTCGCAGTTAAACTTGCCTTCTTTGGTGTGTTGTTGCATATGTATGAATACAAACAACATATGTCTCCGACTGTTCTATTGGTTCTCTATTCTCTGCATATATACTTGGAGTATGAGATTCTCTTAGCTCCCTTGAAAGTTCTGCTTAGTATCTCTCTTTGGTGCGACCTCGAGCCGCATTTCAATGAACCATACTTATCCACCTCTCTTCAAGACTTCTGGGGTCGTCGATGGAACCTCATGGTCCCGGCGATTCTCCGGCCGGCTGTCTACCTCCCGGTGCGACAAATGGCCGGTCGGAAAATGAACTCTGATCAGGCTTTGTTCTTGGGAGTTTTTGCCTCGTTCCTTGTTTCCGGTGTGGTTCACGAGCTTATTTTCTTCTATTTTACACGTGAATCGCCGACAGGTGAAGTCACTTTGTTCTTTGTATTACATGGAGTTTGCACTGCCGCTGAATGCGCTGCGAAGAGGACGAGGTTGGTGCGGCGATGGAAGGTGAGTCAGATGGTTTCACGACTGCTCACGGTGGGATTTGTTGTTATGACCGGTGGTTGGTTGTTTTTCCCTCACCTTGCAAGGAGTGGCATGATCGAGAGACTAGCTGACGAAGCCTTTTTGTTTATTGGTTTCGTCAAGCACAAGTTTTTCTACCTTTGTAGAAACCAATCGCTAAAATCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MBOAT_2

Protein Analysis

345

Amino Acids

39.82

Weight (kDa)

9.44

Isoelectric Point (pI)

53.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MBOAT_2 PF13813 176 - 262 1.7e-18 Membrane bound O-acyl transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 624
AciI CCGC 3 cut(s) 530, 807, 841
AcoI YGGCCR 2 cut(s) 614, 645
AcvI CACGTG 1 cut(s) 749
AfiI CCNNNNNNNGG 2 cut(s) 350, 909
AflIII ACRYGT 1 cut(s) 746
AgeI ACCGGT 1 cut(s) 902
AgsI TTSAA 5 cut(s) 217, 314, 490, 538, 566
AluBI AGCT 5 cut(s) 21, 310, 482, 727, 959
AluI AGCT 5 cut(s) 21, 310, 482, 727, 959
Alw26I GTCTC 2 cut(s) 423, 946
Ama87I CYCGRG 1 cut(s) 524
AoxI GGCC 2 cut(s) 614, 645
ApeKI GCWGC 1 cut(s) 818
ArsI GACNNNNNNTTYG 2 cut(s) 634, 666
AsiGI ACCGGT 1 cut(s) 902
AspLEI GCGC 1 cut(s) 818
AspS9I GGNCC 2 cut(s) 245, 598
AsuC2I CCSGG 2 cut(s) 602, 632
AsuHPI GGTGA 3 cut(s) 776, 865, 917
AvaI CYCGRG 1 cut(s) 524
AvaII GGWCC 2 cut(s) 245, 598
BauI CACGAG 1 cut(s) 722
BbrPI CACGTG 1 cut(s) 749
BbvI GCAGC 1 cut(s) 805
BccI CCATC 4 cut(s) 311, 579, 840, 856
BcgI CGANNNNNNTGC 4 cut(s) 267, 301, 820, 854
BclI TGATCA 1 cut(s) 667
BcnI CCSGG 2 cut(s) 602, 632
BcoDI GTCTC 2 cut(s) 423, 946
BfaI CTAG 1 cut(s) 956
BisI GCNGC 4 cut(s) 530, 807, 819, 842
BlsI GCNGC 4 cut(s) 531, 808, 820, 843
Bme1390I CCNGG 2 cut(s) 602, 632
Bme18I GGWCC 2 cut(s) 245, 598
BmeT110I CYCGRG 1 cut(s) 524
BmgT120I GGNCC 2 cut(s) 245, 598
BmiI GGNNCC 3 cut(s) 181, 590, 600
BmrFI CCNGG 2 cut(s) 602, 632
BmrI ACTGGG 1 cut(s) 251
BmuI ACTGGG 1 cut(s) 251
BoxI GACNNNNGTC 1 cut(s) 243
BpuMI CCSGG 2 cut(s) 602, 632
BsaAI YACGTR 1 cut(s) 749
BsaBI GATNNNNATC 1 cut(s) 109
BsaJI CCNNGG 1 cut(s) 241
BsaWI WCCGGW 2 cut(s) 710, 902
Bsc4I CCNNNNNNNGG 2 cut(s) 350, 909
Bse118I RCCGGY 3 cut(s) 616, 647, 902
Bse1I ACTGG 1 cut(s) 257
Bse8I GATNNNNATC 1 cut(s) 109
BseDI CCNNGG 1 cut(s) 241
BseJI GATNNNNATC 1 cut(s) 109
BseLI CCNNNNNNNGG 2 cut(s) 350, 909
BseNI ACTGG 1 cut(s) 257
BseX3I CGGCCG 1 cut(s) 614
BseXI GCAGC 1 cut(s) 805
Bsh1285I CGRYCG 2 cut(s) 617, 652
BshFI GGCC 2 cut(s) 616, 647
BshTI ACCGGT 1 cut(s) 902
BsiEI CGRYCG 2 cut(s) 617, 652
BsiHKCI CYCGRG 1 cut(s) 524
BsiSI CCGG 7 cut(s) 602, 613, 617, 632, 648, 711, 903
BslFI GGGAC 1 cut(s) 584
BslI CCNNNNNNNGG 2 cut(s) 350, 909
BsmAI GTCTC 2 cut(s) 423, 946
BsmFI GGGAC 1 cut(s) 584
BsmI GAATGC 1 cut(s) 818
BsnI GGCC 2 cut(s) 616, 647
BsoBI CYCGRG 1 cut(s) 524
Bsp143I GATC 2 cut(s) 667, 945
BspACI CCGC 3 cut(s) 530, 807, 841
BspANI GGCC 2 cut(s) 616, 647
BspHI TCATGA 1 cut(s) 15
BspLI GGNNCC 3 cut(s) 181, 590, 600
BsrFI RCCGGY 3 cut(s) 616, 647, 902
BsrI ACTGG 1 cut(s) 257
BssAI RCCGGY 3 cut(s) 616, 647, 902
BssECI CCNNGG 1 cut(s) 241
BssMI GATC 2 cut(s) 667, 945
BssSI CACGAG 1 cut(s) 722
BssT1I CCWWGG 1 cut(s) 241
Bst2BI CACGAG 1 cut(s) 722
Bst4CI ACNGT 3 cut(s) 65, 427, 883
Bst6I CTCTTC 3 cut(s) 233, 567, 818
BstBAI YACGTR 1 cut(s) 749
BstC8I GCNNGC 2 cut(s) 207, 618
BstDEI CTNAG 2 cut(s) 478, 500
BstHHI GCGC 1 cut(s) 818
BstKTI GATC 2 cut(s) 670, 948
BstMAI GTCTC 2 cut(s) 423, 946
BstMBI GATC 2 cut(s) 667, 945
BstMCI CGRYCG 2 cut(s) 617, 652
BstMWI GCNNNNNNNGC 3 cut(s) 294, 815, 965
BstPAI GACNNNNGTC 1 cut(s) 243
BstSCI CCNGG 2 cut(s) 600, 630
BstV1I GCAGC 1 cut(s) 805
BstZI CGGCCG 1 cut(s) 614
BsuRI GGCC 2 cut(s) 616, 647
BtgZI GCGATG 1 cut(s) 859
BtsI GCAGTG 1 cut(s) 801
BtsIMutI CAGTG 1 cut(s) 801
Cac8I GCNNGC 2 cut(s) 207, 618
CciI TCATGA 1 cut(s) 15
CfoI GCGC 1 cut(s) 818
Cfr10I RCCGGY 3 cut(s) 616, 647, 902
Cfr13I GGNCC 2 cut(s) 245, 598
CspAI ACCGGT 1 cut(s) 902
CviAII CATG 5 cut(s) 16, 201, 595, 791, 943
DdeI CTNAG 2 cut(s) 478, 500
DpnI GATC 2 cut(s) 669, 947
DpnII GATC 2 cut(s) 667, 945
EaeI YGGCCR 2 cut(s) 614, 645
EagI CGGCCG 1 cut(s) 614
Eam1104I CTCTTC 3 cut(s) 233, 567, 818
EarI CTCTTC 3 cut(s) 233, 567, 818
EclXI CGGCCG 1 cut(s) 614
Eco130I CCWWGG 1 cut(s) 241
Eco47I GGWCC 2 cut(s) 245, 598
Eco52I CGGCCG 1 cut(s) 614
Eco72I CACGTG 1 cut(s) 749
Eco88I CYCGRG 1 cut(s) 524
EcoT14I CCWWGG 1 cut(s) 241
ErhI CCWWGG 1 cut(s) 241
FaeI CATG 5 cut(s) 19, 204, 598, 794, 946
FalI AAGNNNNNCTT 4 cut(s) 234, 266, 483, 515
FaqI GGGAC 1 cut(s) 584
FatI CATG 5 cut(s) 15, 200, 594, 790, 942
FauNDI CATATG 2 cut(s) 393, 414
FbaI TGATCA 1 cut(s) 667
FblI GTMKAC 1 cut(s) 624
Fnu4HI GCNGC 4 cut(s) 530, 807, 819, 842
Fsp4HI GCNGC 4 cut(s) 530, 807, 819, 842
FspBI CTAG 1 cut(s) 956
GlaI GCGC 1 cut(s) 817
GluI GCNGC 4 cut(s) 530, 807, 819, 842
HaeIII GGCC 2 cut(s) 616, 647
HapII CCGG 7 cut(s) 602, 613, 617, 632, 648, 711, 903
HhaI GCGC 1 cut(s) 818
Hin1II CATG 5 cut(s) 19, 204, 598, 794, 946
Hin6I GCGC 1 cut(s) 816
HinP1I GCGC 1 cut(s) 816
HindIII AAGCTT 1 cut(s) 308
HinfI GANTC 6 cut(s) 84, 279, 472, 607, 752, 856
HpaII CCGG 7 cut(s) 602, 613, 617, 632, 648, 711, 903
HphI GGTGA 3 cut(s) 776, 865, 917
Hpy166II GTNNAC 4 cut(s) 169, 248, 625, 721
Hpy188I TCNGA 4 cut(s) 423, 654, 667, 861
Hpy188III TCNNGA 6 cut(s) 16, 276, 566, 722, 870, 949
Hpy8I GTNNAC 4 cut(s) 169, 248, 625, 721
Hpy99I CGWCG 1 cut(s) 585
HpyAV CCTTC 3 cut(s) 244, 382, 844
HpyCH4III ACNGT 3 cut(s) 65, 427, 883
HpyCH4IV ACGT 1 cut(s) 748
HpyCH4V TGCA 5 cut(s) 44, 391, 451, 801, 932
HpyF10VI GCNNNNNNNGC 3 cut(s) 294, 815, 965
HpyF3I CTNAG 2 cut(s) 478, 500
HpySE526I ACGT 1 cut(s) 748
Hsp92II CATG 5 cut(s) 19, 204, 598, 794, 946
HspAI GCGC 1 cut(s) 816
KroI GCCGGC 1 cut(s) 616
KroNI GCCGGC 1 cut(s) 618
Ksp22I TGATCA 1 cut(s) 667
Kzo9I GATC 2 cut(s) 667, 945
LmnI GCTCC 1 cut(s) 487
Lsp1109I GCAGC 1 cut(s) 805
MaeI CTAG 1 cut(s) 956
MaeII ACGT 1 cut(s) 748
MaeIII GTNAC 2 cut(s) 65, 769
MalI GATC 2 cut(s) 669, 947
MboI GATC 2 cut(s) 667, 945
MboII GAAGA 6 cut(s) 20, 110, 220, 554, 727, 835
MluCI AATT 1 cut(s) 211
MlyI GAGTC 1 cut(s) 865
MmeI TCCRAC 2 cut(s) 446, 632
MroNI GCCGGC 1 cut(s) 616
MseI TTAA 2 cut(s) 23, 363
MslI CAYNNNNRTG 2 cut(s) 396, 537
MspA1I CMGCKG 1 cut(s) 809
MspI CCGG 7 cut(s) 602, 613, 617, 632, 648, 711, 903
MspR9I CCNGG 2 cut(s) 602, 632
Mva1269I GAATGC 1 cut(s) 818
MwoI GCNNNNNNNGC 3 cut(s) 294, 815, 965
NaeI GCCGGC 1 cut(s) 618
NciI CCSGG 2 cut(s) 602, 632
NdeI CATATG 2 cut(s) 393, 414
NdeII GATC 2 cut(s) 667, 945
NgoMIV GCCGGC 1 cut(s) 616
NlaIII CATG 5 cut(s) 19, 204, 598, 794, 946
NlaIV GGNNCC 3 cut(s) 181, 590, 600
NmuCI GTSAC 1 cut(s) 769
PaeR7I CTCGAG 1 cut(s) 524
PagI TCATGA 1 cut(s) 15
PcsI WCGNNNNNNNCGW 1 cut(s) 1031
PctI GAATGC 1 cut(s) 818
PdiI GCCGGC 1 cut(s) 618
PfeI GAWTC 5 cut(s) 84, 279, 472, 607, 752
PinAI ACCGGT 1 cut(s) 902
PkrI GCNGC 4 cut(s) 531, 808, 820, 843
PleI GAGTC 1 cut(s) 864
PmaCI CACGTG 1 cut(s) 749
PmlI CACGTG 1 cut(s) 749
PpsI GAGTC 1 cut(s) 864
Ppu21I YACGTR 1 cut(s) 749
PshAI GACNNNNGTC 1 cut(s) 243
PspCI CACGTG 1 cut(s) 749
PspN4I GGNNCC 3 cut(s) 181, 590, 600
PspPI GGNCC 2 cut(s) 245, 598
PspXI VCTCGAGB 1 cut(s) 524
RseI CAYNNNNRTG 2 cut(s) 396, 537
SaqAI TTAA 2 cut(s) 23, 363
SatI GCNGC 4 cut(s) 530, 807, 819, 842
Sau3AI GATC 2 cut(s) 667, 945
Sau96I GGNCC 2 cut(s) 245, 598
SchI GAGTC 1 cut(s) 865
ScrFI CCNGG 2 cut(s) 602, 632
Sfr274I CTCGAG 1 cut(s) 524
SinI GGWCC 2 cut(s) 245, 598
SlaI CTCGAG 1 cut(s) 524
SmiMI CAYNNNNRTG 2 cut(s) 396, 537
SmlI CTYRAG 1 cut(s) 524
SmoI CTYRAG 1 cut(s) 524
Sse9I AATT 1 cut(s) 211
SsiI CCGC 3 cut(s) 530, 807, 841
SspMI CTAG 1 cut(s) 956
StyD4I CCNGG 2 cut(s) 600, 630
StyI CCWWGG 1 cut(s) 241
TaaI ACNGT 3 cut(s) 65, 427, 883
TaiI ACGT 1 cut(s) 751
TaqI TCGA 5 cut(s) 103, 237, 525, 583, 948
TasI AATT 1 cut(s) 211
TauI GCSGC 3 cut(s) 532, 809, 844
TfiI GAWTC 5 cut(s) 84, 279, 472, 607, 752
Tru1I TTAA 2 cut(s) 23, 363
Tru9I TTAA 2 cut(s) 23, 363
TscAI CASTG 1 cut(s) 808
TseFI GTSAC 1 cut(s) 769
TseI GCWGC 1 cut(s) 818
Tsp45I GTSAC 1 cut(s) 769
TspDTI ATGAA 3 cut(s) 414, 555, 674
TspRI CASTG 1 cut(s) 808
VpaK11BI GGWCC 2 cut(s) 245, 598
XhoI CTCGAG 1 cut(s) 524
XmiI GTMKAC 1 cut(s) 624
XspI CTAG 1 cut(s) 956
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.