Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002235.1

Orthogroup ID

OG0000676

Physical Location & Seq

Genomic Coordinates Reverse (-)

242237 .. 243199

Gene Structure 963 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002235.1_g000075.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

atgggcggccatttctgtatgtacataacctacgcggcagtcaatcttggtggcccctcagccttctttcttggttgtcttgccatcttcaaactcctcctcttctcctttgactctggtcctctatcaccacccccgaaaggacttctccccttcatttcaatagctcttcttcccatcaacattaagagactccccaaaaggcctcgctacggttacactatcacaaaattggtgccaaacaagacagctttgtgggcattgaaggccttgcttttgggtgaaataattcatgtacgcaaggattatagacagaatttacatccctatgtactcacatccttgtccctttcccacctctaccttggtctagaaataggctttgctctgagtgtagccttgcctcaagccatgtttgggttcgaactcgagccacacttcaacgagccttacttttccacctctcttcaggacttctggggccgtagatggaaccttgcagtctcaaacactctacgcccccttgtgtaccatcccataaggcgtatatctacaggcaagagcggagccacctacgagccaatagatacctcaaaacctccgcgggctccagttctgccggtcatctcttctttcaccatctcgggtctaatgcacgagctcttcttttactacgtcactcgtgcgcgtcccacgggggaaatgatgtgcttctttgtcctacaaggtgtgtgcttggcaattgaactagaggtgaagaaggcgttggctcatagggtacggtttcacccgctagtttcagggctgttgacgttggtgtttttgattgtcactactgattggcttcttttccctcacataatcagaactggtgcggatgcaaagagtttagaagagtgtgcctgtatggtggattttgtgaaggccaacattttcccattgtattattggcagaagagttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MBOAT_2

Protein Analysis

320

Amino Acids

36.12

Weight (kDa)

9.46

Isoelectric Point (pI)

48.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000676)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34490 AT1G34500 AT1G34520 AT5G51420 AT5G55320 AT5G55330 AT5G55340 AT5G55350 AT5G55360 AT5G55370 AT5G55380
fragaria_vesca	FvH4_1g25220 FvH4_2g09840
malus_domestica	MD03G1191100.v1.1 MD03G1191200.v1.1 MD11G1208100.v1.1
prunus_persica	Prupe.4G227200_v2.0.a1 Prupe.4G227400_v2.0.a1
pyrus_communis	pycom03g14430 pycom11g18170 pycom11g18340
rosa_chinensis	RchiOBHm_Chr2g0123061 RchiOBHm_Chr2g0123071 RchiOBHm_Chr2g0123131 RchiOBHm_Chr6g0266191 RchiOBHm_Chr6g0266201 RchiOBHm_Chr6g0266251 RchiOBHm_Chr6g0266341
rosa_laevigata	RLG00000014105 RLG00000014107 RLG00000018729 RLG00000018730 RLG00000023150
rosa_multiflora	Rmu_sc0000168.1_g000022 Rmu_sc0002235.1_g000075 Rmu_sc0003605.1_g000042 Rmu_sc0005573.1_g000002 Rmu_sc0005573.1_g000004 Rmu_sc0009036.1_g000008 Rmu_sc0009589.1_g000002
rosa_roxburghii	Rroxscaffold_2G00120900 Rroxscaffold_2G00120910 Rroxscaffold_6G00397020 Rroxscaffold_7G00201410 Rroxscaffold_7G00201760 Rroxscaffold_7G00201820
rosa_rugosa	Rorug02G0243000 Rorug02G0243100 Rorug03G0217500 Rorug06G0024700
rosa_samantha	Rh2AG302700 Rh2AG302800 Rh2BG310300 Rh2BG310400 Rh2BG310600 Rh2CG289000 Rh2CG289200 Rh2DG326800 Rh3BG302500 Rh3BG302800 Rh3BG303100 Rh3BG303200 Rh6AG145400 Rh6AG148500 Rh6BG146000 Rh6CG142600 Rh6DG130500
rosa_wichuraiana	Rw0G004920 Rw0G004930 Rw2G024180 Rw2G024190 Rw3G023820 Rw3G023880 Rw6G012560 Rw6G012860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	235
AccBSI	CCGCTC	1 cut(s)	564
AccII	CGCG	3 cut(s)	35, 604, 688
AciI	CCGC	7 cut(s)	6, 35, 564, 602, 604, 791, 875
AcoI	YGGCCR	1 cut(s)	7
AcsI	RAATTY	1 cut(s)	316
AcuI	CTGAAG	1 cut(s)	452
AfaI	GTAC	5 cut(s)	23, 297, 333, 530, 780
AfiI	CCNNNNNNNGG	3 cut(s)	140, 212, 417
AgsI	TTSAA	5 cut(s)	91, 162, 265, 442, 746
AjuI	GAANNNNNNNTTGG	2 cut(s)	749, 781
AluBI	AGCT	3 cut(s)	167, 251, 661
AluI	AGCT	3 cut(s)	167, 251, 661
Alw21I	GWGCWC	1 cut(s)	663
Alw26I	GTCTC	2 cut(s)	184, 508
Ama87I	CYCGRG	2 cut(s)	428, 643
AoxI	GGCC	6 cut(s)	7, 52, 203, 267, 481, 924
ApoI	RAATTY	1 cut(s)	316
Asp700I	GAANNNNTTC	1 cut(s)	288
AspLEI	GCGC	1 cut(s)	688
AspS9I	GGNCC	3 cut(s)	53, 119, 481
AsuHPI	GGTGA	5 cut(s)	120, 293, 628, 766, 779
AsuII	TTCGAA	1 cut(s)	423
AvaI	CYCGRG	2 cut(s)	428, 643
AvaII	GGWCC	1 cut(s)	119
BanI	GGYRCC	1 cut(s)	235
BanII	GRGCYC	2 cut(s)	610, 663
BauI	CACGAG	2 cut(s)	656, 681
Bbv12I	GWGCWC	1 cut(s)	663
BbvCI	CCTCAGC	1 cut(s)	58
BccI	CCATC	5 cut(s)	92, 185, 483, 540, 647
BceAI	ACGGC	1 cut(s)	468
BcoDI	GTCTC	2 cut(s)	184, 508
BfaI	CTAG	3 cut(s)	371, 749, 794
BfmI	CTRYAG	1 cut(s)	552
BisI	GCNGC	2 cut(s)	7, 36
BlsI	GCNGC	2 cut(s)	8, 37
Bme18I	GGWCC	1 cut(s)	119
BmeT110I	CYCGRG	2 cut(s)	428, 643
BmgT120I	GGNCC	3 cut(s)	53, 119, 481
BmiI	GGNNCC	6 cut(s)	55, 237, 482, 494, 568, 609
BmsI	GCATC	1 cut(s)	868
BoxI	GACNNNNGTC	1 cut(s)	117
BpmI	CTGGAG	1 cut(s)	594
Bpu10I	CCTNAGC	1 cut(s)	58
Bpu14I	TTCGAA	1 cut(s)	423
BpuEI	CTTGAG	1 cut(s)	390
BsaJI	CCNNGG	3 cut(s)	364, 602, 693
Bsc4I	CCNNNNNNNGG	3 cut(s)	140, 212, 417
Bse118I	RCCGGY	1 cut(s)	619
Bse1I	ACTGG	2 cut(s)	611, 874
BseDI	CCNNGG	3 cut(s)	364, 602, 693
BseGI	GGATG	4 cut(s)	322, 338, 532, 883
BseLI	CCNNNNNNNGG	3 cut(s)	140, 212, 417
BseMII	CTCAG	2 cut(s)	72, 380
BseNI	ACTGG	2 cut(s)	611, 874
BseRI	GAGGAG	2 cut(s)	86, 89
Bsh1236I	CGCG	3 cut(s)	35, 604, 688
BshFI	GGCC	6 cut(s)	9, 54, 205, 269, 483, 926
BshNI	GGYRCC	1 cut(s)	235
BsiHKAI	GWGCWC	1 cut(s)	663
BsiHKCI	CYCGRG	2 cut(s)	428, 643
BsiSI	CCGG	1 cut(s)	620
BslFI	GGGAC	2 cut(s)	331, 675
BslI	CCNNNNNNNGG	3 cut(s)	140, 212, 417
BsmAI	GTCTC	2 cut(s)	184, 508
BsmFI	GGGAC	2 cut(s)	331, 675
BsnI	GGCC	6 cut(s)	9, 54, 205, 269, 483, 926
BsoBI	CYCGRG	2 cut(s)	428, 643
Bsp119I	TTCGAA	1 cut(s)	423
Bsp1286I	GDGCHC	2 cut(s)	610, 663
Bsp1407I	TGTACA	1 cut(s)	21
BspACI	CCGC	7 cut(s)	6, 35, 564, 602, 604, 791, 875
BspANI	GGCC	6 cut(s)	9, 54, 205, 269, 483, 926
BspCNI	CTCAG	2 cut(s)	71, 381
BspFNI	CGCG	3 cut(s)	35, 604, 688
BspLI	GGNNCC	6 cut(s)	55, 237, 482, 494, 568, 609
BspQI	GCTCTTC	2 cut(s)	174, 668
BspT104I	TTCGAA	1 cut(s)	423
BspT107I	GGYRCC	1 cut(s)	235
BsrBI	CCGCTC	1 cut(s)	564
BsrFI	RCCGGY	1 cut(s)	619
BsrGI	TGTACA	1 cut(s)	21
BsrI	ACTGG	2 cut(s)	611, 874
BssAI	RCCGGY	1 cut(s)	619
BssECI	CCNNGG	3 cut(s)	364, 602, 693
BssSI	CACGAG	2 cut(s)	656, 681
BssT1I	CCWWGG	1 cut(s)	364
Bst2BI	CACGAG	2 cut(s)	656, 681
Bst4CI	ACNGT	2 cut(s)	215, 783
Bst6I	CTCTTC	7 cut(s)	107, 174, 471, 634, 668, 888, 950
BstAUI	TGTACA	1 cut(s)	21
BstBI	TTCGAA	1 cut(s)	423
BstC8I	GCNNGC	1 cut(s)	606
BstDEI	CTNAG	2 cut(s)	58, 389
BstDSI	CCRYGG	2 cut(s)	602, 693
BstF5I	GGATG	4 cut(s)	322, 338, 532, 883
BstFNI	CGCG	3 cut(s)	35, 604, 688
BstHHI	GCGC	1 cut(s)	688
BstMAI	GTCTC	2 cut(s)	184, 508
BstMWI	GCNNNNNNNGC	2 cut(s)	257, 266
BstPAI	GACNNNNGTC	1 cut(s)	117
BstSFI	CTRYAG	1 cut(s)	552
BstUI	CGCG	3 cut(s)	35, 604, 688
BsuRI	GGCC	6 cut(s)	9, 54, 205, 269, 483, 926
BtgI	CCRYGG	2 cut(s)	602, 693
BtsCI	GGATG	4 cut(s)	322, 338, 532, 883
Cac8I	GCNNGC	1 cut(s)	606
CfoI	GCGC	1 cut(s)	688
Cfr10I	RCCGGY	1 cut(s)	619
Cfr13I	GGNCC	3 cut(s)	53, 119, 481
Cfr42I	CCGCGG	1 cut(s)	605
CseI	GACGC	1 cut(s)	677
Csp6I	GTAC	5 cut(s)	22, 296, 332, 529, 779
CspCI	CAANNNNNGTGG	2 cut(s)	31, 66
CviAII	CATG	2 cut(s)	293, 412
CviQI	GTAC	5 cut(s)	22, 296, 332, 529, 779
DdeI	CTNAG	2 cut(s)	58, 389
EaeI	YGGCCR	1 cut(s)	7
Eam1104I	CTCTTC	7 cut(s)	107, 174, 471, 634, 668, 888, 950
EarI	CTCTTC	7 cut(s)	107, 174, 471, 634, 668, 888, 950
Ecl136II	GAGCTC	1 cut(s)	661
Eco130I	CCWWGG	1 cut(s)	364
Eco147I	AGGCCT	2 cut(s)	205, 269
Eco24I	GRGCYC	2 cut(s)	610, 663
Eco47I	GGWCC	1 cut(s)	119
Eco53kI	GAGCTC	1 cut(s)	661
Eco57I	CTGAAG	1 cut(s)	452
Eco88I	CYCGRG	2 cut(s)	428, 643
EcoICRI	GAGCTC	1 cut(s)	661
EcoT14I	CCWWGG	1 cut(s)	364
EcoT38I	GRGCYC	2 cut(s)	610, 663
ErhI	CCWWGG	1 cut(s)	364
FaeI	CATG	2 cut(s)	296, 415
FaqI	GGGAC	2 cut(s)	331, 675
FatI	CATG	2 cut(s)	292, 411
FauI	CCCGC	2 cut(s)	597, 798
Fnu4HI	GCNGC	2 cut(s)	7, 36
FokI	GGATG	4 cut(s)	309, 325, 519, 890
FriOI	GRGCYC	2 cut(s)	610, 663
Fsp4HI	GCNGC	2 cut(s)	7, 36
FspBI	CTAG	3 cut(s)	371, 749, 794
GlaI	GCGC	1 cut(s)	687
GluI	GCNGC	2 cut(s)	7, 36
GsuI	CTGGAG	1 cut(s)	594
HaeIII	GGCC	6 cut(s)	9, 54, 205, 269, 483, 926
HapII	CCGG	1 cut(s)	620
HgaI	GACGC	1 cut(s)	677
HhaI	GCGC	1 cut(s)	688
Hin1II	CATG	2 cut(s)	296, 415
Hin6I	GCGC	1 cut(s)	686
HinP1I	GCGC	1 cut(s)	686
HincII	GTYRAC	1 cut(s)	810
HindII	GTYRAC	1 cut(s)	810
HinfI	GANTC	2 cut(s)	113, 192
HpaII	CCGG	1 cut(s)	620
HphI	GGTGA	5 cut(s)	120, 293, 628, 766, 779
Hpy166II	GTNNAC	2 cut(s)	529, 810
Hpy188I	TCNGA	2 cut(s)	390, 866
Hpy188III	TCNNGA	2 cut(s)	371, 470
Hpy8I	GTNNAC	2 cut(s)	529, 810
HpyAV	CCTTC	5 cut(s)	73, 163, 259, 754, 916
HpyCH4III	ACNGT	2 cut(s)	215, 783
HpyCH4IV	ACGT	2 cut(s)	675, 812
HpyCH4V	TGCA	3 cut(s)	500, 655, 881
HpyF10VI	GCNNNNNNNGC	2 cut(s)	257, 266
HpyF3I	CTNAG	2 cut(s)	58, 389
HpySE526I	ACGT	2 cut(s)	675, 812
Hsp92II	CATG	2 cut(s)	296, 415
HspAI	GCGC	1 cut(s)	686
KspI	CCGCGG	1 cut(s)	605
LguI	GCTCTTC	2 cut(s)	174, 668
LmnI	GCTCC	2 cut(s)	566, 613
LpnPI	CCDG	9 cut(s)	102, 455, 463, 540, 624, 633, 786, 855, 916
LweI	GCATC	1 cut(s)	868
MaeI	CTAG	3 cut(s)	371, 749, 794
MaeII	ACGT	2 cut(s)	675, 812
MaeIII	GTNAC	3 cut(s)	215, 676, 829
MbiI	CCGCTC	1 cut(s)	564
MboII	GAAGA	9 cut(s)	79, 94, 161, 164, 458, 621, 655, 769, 905
MfeI	CAATTG	1 cut(s)	741
MhlI	GDGCHC	2 cut(s)	610, 663
MluCI	AATT	4 cut(s)	230, 288, 316, 741
MlyI	GAGTC	2 cut(s)	107, 186
MroXI	GAANNNNTTC	1 cut(s)	288
MseI	TTAA	2 cut(s)	186, 961
MslI	CAYNNNNRTG	1 cut(s)	327
MspA1I	CMGCKG	1 cut(s)	604
MspI	CCGG	1 cut(s)	620
MunI	CAATTG	1 cut(s)	741
MvnI	CGCG	3 cut(s)	35, 604, 688
MwoI	GCNNNNNNNGC	2 cut(s)	257, 266
NlaIII	CATG	2 cut(s)	296, 415
NlaIV	GGNNCC	6 cut(s)	55, 237, 482, 494, 568, 609
NmuCI	GTSAC	2 cut(s)	676, 829
NspV	TTCGAA	1 cut(s)	423
PaeR7I	CTCGAG	1 cut(s)	428
PceI	AGGCCT	2 cut(s)	205, 269
PciSI	GCTCTTC	2 cut(s)	174, 668
PdmI	GAANNNNTTC	1 cut(s)	288
PkrI	GCNGC	2 cut(s)	8, 37
PleI	GAGTC	2 cut(s)	107, 186
PpsI	GAGTC	2 cut(s)	107, 186
PshAI	GACNNNNGTC	1 cut(s)	117
Psp124BI	GAGCTC	1 cut(s)	663
PspN4I	GGNNCC	6 cut(s)	55, 237, 482, 494, 568, 609
PspPI	GGNCC	3 cut(s)	53, 119, 481
PspXI	VCTCGAGB	1 cut(s)	428
RsaI	GTAC	5 cut(s)	23, 297, 333, 530, 780
RsaNI	GTAC	5 cut(s)	22, 296, 332, 529, 779
RseI	CAYNNNNRTG	1 cut(s)	327
SacI	GAGCTC	1 cut(s)	663
SacII	CCGCGG	1 cut(s)	605
SapI	GCTCTTC	2 cut(s)	174, 668
SaqAI	TTAA	2 cut(s)	186, 961
SatI	GCNGC	2 cut(s)	7, 36
Sau96I	GGNCC	3 cut(s)	53, 119, 481
SchI	GAGTC	2 cut(s)	107, 186
SduI	GDGCHC	2 cut(s)	610, 663
SfaNI	GCATC	1 cut(s)	868
SfcI	CTRYAG	1 cut(s)	552
Sfr274I	CTCGAG	1 cut(s)	428
Sfr303I	CCGCGG	1 cut(s)	605
SfuI	TTCGAA	1 cut(s)	423
SgrBI	CCGCGG	1 cut(s)	605
SinI	GGWCC	1 cut(s)	119
SlaI	CTCGAG	1 cut(s)	428
SmiMI	CAYNNNNRTG	1 cut(s)	327
SmlI	CTYRAG	2 cut(s)	405, 428
SmoI	CTYRAG	2 cut(s)	405, 428
Sse9I	AATT	4 cut(s)	230, 288, 316, 741
SseBI	AGGCCT	2 cut(s)	205, 269
SsiI	CCGC	7 cut(s)	6, 35, 564, 602, 604, 791, 875
SspMI	CTAG	3 cut(s)	371, 749, 794
SstI	GAGCTC	1 cut(s)	663
StuI	AGGCCT	2 cut(s)	205, 269
StyI	CCWWGG	1 cut(s)	364
TaaI	ACNGT	2 cut(s)	215, 783
TaiI	ACGT	2 cut(s)	678, 815
TaqI	TCGA	2 cut(s)	423, 429
TasI	AATT	4 cut(s)	230, 288, 316, 741
TatI	WGTACW	2 cut(s)	21, 331
TauI	GCSGC	2 cut(s)	9, 38
Tru1I	TTAA	2 cut(s)	186, 961
Tru9I	TTAA	2 cut(s)	186, 961
TseFI	GTSAC	2 cut(s)	676, 829
Tsp45I	GTSAC	2 cut(s)	676, 829
TspDTI	ATGAA	2 cut(s)	145, 281
VpaK11BI	GGWCC	1 cut(s)	119
XapI	RAATTY	1 cut(s)	316
XbaI	TCTAGA	1 cut(s)	370
XcmI	CCANNNNNNNNNTGG	2 cut(s)	362, 945
XhoI	CTCGAG	1 cut(s)	428
XmnI	GAANNNNTTC	1 cut(s)	288
XspI	CTAG	3 cut(s)	371, 749, 794

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.