RLG00000014107

Long-chain-alcohol

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000676
Physical Location & Seq
Reverse (-)
47372158 .. 47373252
1095 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000014107

Sequence Viewer

Length: 1095 bp
ATGGATGGTGATGAAATCAAAAATTTCATCAAGGTATGGATCATAGCCATTGCATCTCAATGTTATTGTTATTACGTAGCAGCAAGAATCCCAACAAAGAGCATGATGAGGCTCATCTCTCTCCTCCCAATCTTGTACCTACTTCTCATGCTCCCCTTGAACCTCCACTCGATCCATCTTGGTGCCCCCTCATCCTTCTTTCTTGGTTTTCTTGCCATCTTCAAACTCCTCCTCTTCTCCTTTGACTCTGGTCCTCTATCACCACCCCCAAAAGGACTTCTCCCCTTCATTTCAATAGCTCTTCTTCCCATCAACATTAAGAGACTCCCCAAAAGGCCTCGCTACGGTTACACAATCACAAAATTGGTGTCAAACAAGACAGCTTTGTGGGCATTGAAGGCCTTGCTTTTGGGTGAAATAATTCATGTACGCAAGGATTATAGACAGAATTTACATCCCTATGTACTCACATCCTTGTCCCTTTCCCACCTCTACCTTGGTCTAGAAATAGGCTTTGCTCTGAGTGTAGTCTTGCCTCAAGCCATGTTTGGGTTTGAACTCGAGCCACACTTCAACGAGCCTTACTTTTCCACCTCTCTTCAGGACTTTTGGGGCCGTAGATGGAACCTTGCAGTCTCAAACAGTCTACGCCCCCTTGTATACCATCCCATAAGGCGTATATCTACAGGCAAGAGCGGAGCCACCTACGAGCCACTAGTTACCTCAAAACCTCCGCGGGCTCCAGTTCTGCCAGTCATCTCTGCTTTCACCATCTCGGGTCTAATGCACGAGCTCTTCTTTTATTACATCACTCGTGCTCGTCCCACGGGGGAAATGATGTGCTTCTTTGTCCTACAAGGTGTGTGCTTGGCAATTGAACTCGAGGTGAAGAAGGCGTTGGCTCATAGGGTACGGTTTCACCCGCTAGTTTCAGGGCTGTTGACGTTGGTGTTTTTGATTGTCACTACTGACTGGCTTCTTTTCCCTCACATAATCAGAACTGGTGCGGATGCAAAGAGTTTAGAAGAGTGTGCCAGTATGGTGGATTTTGTGAAGGCCAACATTTCCCCATTGTATTATTGGCAGAAGAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MBOAT_2

Protein Analysis

365

Amino Acids

41.27

Weight (kDa)

9.61

Isoelectric Point (pI)

41.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MBOAT_2 PF13813 188 - 284 1.5e-16 Membrane bound O-acyl transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 182
AccBSI CCGCTC 1 cut(s) 696
AccI GTMKAC 2 cut(s) 646, 660
AccII CGCG 1 cut(s) 736
AciI CCGC 5 cut(s) 696, 734, 736, 923, 1007
AclWI GGATC 2 cut(s) 47, 166
AcsI RAATTY 2 cut(s) 22, 448
AcuI CTGAAG 1 cut(s) 584
AfaI GTAC 4 cut(s) 137, 429, 465, 912
AfiI CCNNNNNNNGG 3 cut(s) 272, 344, 549
AgsI TTSAA 7 cut(s) 160, 223, 294, 397, 557, 574, 878
AhlI ACTAGT 1 cut(s) 715
AjuI GAANNNNNNNTTGG 2 cut(s) 881, 913
AluBI AGCT 3 cut(s) 299, 383, 793
AluI AGCT 3 cut(s) 299, 383, 793
Alw21I GWGCWC 2 cut(s) 795, 820
Alw26I GTCTC 2 cut(s) 316, 640
AlwI GGATC 2 cut(s) 47, 166
Ama87I CYCGRG 3 cut(s) 560, 775, 881
AoxI GGCC 4 cut(s) 335, 399, 613, 1056
ApeKI GCWGC 1 cut(s) 80
ApoI RAATTY 2 cut(s) 22, 448
ArsI GACNNNNNNTTYG 2 cut(s) 353, 385
Asp700I GAANNNNTTC 1 cut(s) 420
AspS9I GGNCC 2 cut(s) 251, 613
AsuHPI GGTGA 6 cut(s) 20, 252, 425, 760, 898, 911
AvaI CYCGRG 3 cut(s) 560, 775, 881
AvaII GGWCC 1 cut(s) 251
BaeGI GKGCMC 1 cut(s) 187
BanI GGYRCC 1 cut(s) 182
BanII GRGCYC 2 cut(s) 742, 795
BauI CACGAG 2 cut(s) 788, 813
Bbv12I GWGCWC 2 cut(s) 795, 820
BbvI GCAGC 1 cut(s) 92
BccI CCATC 6 cut(s) 183, 224, 317, 615, 672, 779
BceAI ACGGC 1 cut(s) 600
BcoDI GTCTC 2 cut(s) 316, 640
BcuI ACTAGT 1 cut(s) 715
BfaI CTAG 3 cut(s) 503, 716, 926
BfmI CTRYAG 1 cut(s) 684
BisI GCNGC 1 cut(s) 81
BlsI GCNGC 1 cut(s) 82
Bme18I GGWCC 1 cut(s) 251
BmeT110I CYCGRG 3 cut(s) 560, 775, 881
BmgT120I GGNCC 2 cut(s) 251, 613
BmiI GGNNCC 5 cut(s) 184, 614, 626, 700, 741
BmsI GCATC 2 cut(s) 62, 1000
BoxI GACNNNNGTC 1 cut(s) 249
BpmI CTGGAG 1 cut(s) 726
BpuEI CTTGAG 1 cut(s) 522
BsaAI YACGTR 1 cut(s) 76
BsaJI CCNNGG 3 cut(s) 496, 734, 825
Bsc4I CCNNNNNNNGG 3 cut(s) 272, 344, 549
Bse1I ACTGG 5 cut(s) 743, 752, 977, 1006, 1035
Bse3DI GCAATG 1 cut(s) 48
BseDI CCNNGG 3 cut(s) 496, 734, 825
BseGI GGATG 6 cut(s) 10, 191, 454, 470, 664, 1015
BseLI CCNNNNNNNGG 3 cut(s) 272, 344, 549
BseMI GCAATG 1 cut(s) 48
BseMII CTCAG 1 cut(s) 512
BseNI ACTGG 5 cut(s) 743, 752, 977, 1006, 1035
BseRI GAGGAG 3 cut(s) 113, 218, 221
BseSI GKGCMC 1 cut(s) 187
BseXI GCAGC 1 cut(s) 92
Bsh1236I CGCG 1 cut(s) 736
BshFI GGCC 4 cut(s) 337, 401, 615, 1058
BshNI GGYRCC 1 cut(s) 182
BsiHKAI GWGCWC 2 cut(s) 795, 820
BsiHKCI CYCGRG 3 cut(s) 560, 775, 881
BslFI GGGAC 2 cut(s) 463, 807
BslI CCNNNNNNNGG 3 cut(s) 272, 344, 549
BsmAI GTCTC 2 cut(s) 316, 640
BsmFI GGGAC 2 cut(s) 463, 807
BsnI GGCC 4 cut(s) 337, 401, 615, 1058
BsoBI CYCGRG 3 cut(s) 560, 775, 881
Bsp1286I GDGCHC 4 cut(s) 187, 742, 795, 820
Bsp143I GATC 2 cut(s) 39, 171
BspACI CCGC 5 cut(s) 696, 734, 736, 923, 1007
BspANI GGCC 4 cut(s) 337, 401, 615, 1058
BspCNI CTCAG 1 cut(s) 513
BspFNI CGCG 1 cut(s) 736
BspLI GGNNCC 5 cut(s) 184, 614, 626, 700, 741
BspPI GGATC 2 cut(s) 47, 166
BspQI GCTCTTC 2 cut(s) 306, 800
BspT107I GGYRCC 1 cut(s) 182
BsrBI CCGCTC 1 cut(s) 696
BsrDI GCAATG 1 cut(s) 48
BsrI ACTGG 5 cut(s) 743, 752, 977, 1006, 1035
BssECI CCNNGG 3 cut(s) 496, 734, 825
BssMI GATC 2 cut(s) 39, 171
BssNAI GTATAC 1 cut(s) 661
BssSI CACGAG 2 cut(s) 788, 813
BssT1I CCWWGG 1 cut(s) 496
Bst1107I GTATAC 1 cut(s) 661
Bst2BI CACGAG 2 cut(s) 788, 813
Bst4CI ACNGT 3 cut(s) 347, 644, 915
Bst6I CTCTTC 6 cut(s) 239, 306, 603, 800, 1020, 1082
BstBAI YACGTR 1 cut(s) 76
BstC8I GCNNGC 1 cut(s) 738
BstDEI CTNAG 1 cut(s) 521
BstDSI CCRYGG 2 cut(s) 734, 825
BstF5I GGATG 6 cut(s) 10, 191, 454, 470, 664, 1015
BstFNI CGCG 1 cut(s) 736
BstKTI GATC 2 cut(s) 42, 174
BstMAI GTCTC 2 cut(s) 316, 640
BstMBI GATC 2 cut(s) 39, 171
BstMWI GCNNNNNNNGC 2 cut(s) 389, 398
BstPAI GACNNNNGTC 1 cut(s) 249
BstSFI CTRYAG 1 cut(s) 684
BstSLI GKGCMC 1 cut(s) 187
BstSNI TACGTA 1 cut(s) 76
BstUI CGCG 1 cut(s) 736
BstV1I GCAGC 1 cut(s) 92
BstXI CCANNNNNNTGG 1 cut(s) 1042
BstZ17I GTATAC 1 cut(s) 661
BsuRI GGCC 4 cut(s) 337, 401, 615, 1058
BtgI CCRYGG 2 cut(s) 734, 825
BtsCI GGATG 6 cut(s) 10, 191, 454, 470, 664, 1015
Cac8I GCNNGC 1 cut(s) 738
Cfr13I GGNCC 2 cut(s) 251, 613
Cfr42I CCGCGG 1 cut(s) 737
Csp6I GTAC 4 cut(s) 136, 428, 464, 911
CviAII CATG 4 cut(s) 103, 148, 425, 544
CviQI GTAC 4 cut(s) 136, 428, 464, 911
DdeI CTNAG 1 cut(s) 521
DpnI GATC 2 cut(s) 41, 173
DpnII GATC 2 cut(s) 39, 171
Eam1104I CTCTTC 6 cut(s) 239, 306, 603, 800, 1020, 1082
EarI CTCTTC 6 cut(s) 239, 306, 603, 800, 1020, 1082
Ecl136II GAGCTC 1 cut(s) 793
Eco105I TACGTA 1 cut(s) 76
Eco130I CCWWGG 1 cut(s) 496
Eco147I AGGCCT 2 cut(s) 337, 401
Eco24I GRGCYC 2 cut(s) 742, 795
Eco47I GGWCC 1 cut(s) 251
Eco53kI GAGCTC 1 cut(s) 793
Eco57I CTGAAG 1 cut(s) 584
Eco88I CYCGRG 3 cut(s) 560, 775, 881
EcoICRI GAGCTC 1 cut(s) 793
EcoT14I CCWWGG 1 cut(s) 496
EcoT38I GRGCYC 2 cut(s) 742, 795
ErhI CCWWGG 1 cut(s) 496
FaeI CATG 4 cut(s) 106, 151, 428, 547
FaqI GGGAC 2 cut(s) 463, 807
FatI CATG 4 cut(s) 102, 147, 424, 543
FauI CCCGC 2 cut(s) 729, 930
FblI GTMKAC 2 cut(s) 646, 660
Fnu4HI GCNGC 1 cut(s) 81
FokI GGATG 6 cut(s) 17, 178, 441, 457, 651, 1022
FriOI GRGCYC 2 cut(s) 742, 795
Fsp4HI GCNGC 1 cut(s) 81
FspBI CTAG 3 cut(s) 503, 716, 926
GluI GCNGC 1 cut(s) 81
GsuI CTGGAG 1 cut(s) 726
HaeIII GGCC 4 cut(s) 337, 401, 615, 1058
Hin1II CATG 4 cut(s) 106, 151, 428, 547
HincII GTYRAC 1 cut(s) 942
HindII GTYRAC 1 cut(s) 942
HinfI GANTC 3 cut(s) 87, 245, 324
HphI GGTGA 6 cut(s) 20, 252, 425, 760, 898, 911
Hpy166II GTNNAC 3 cut(s) 647, 661, 942
Hpy188I TCNGA 2 cut(s) 522, 998
Hpy188III TCNNGA 2 cut(s) 503, 602
Hpy8I GTNNAC 3 cut(s) 647, 661, 942
HpyAV CCTTC 5 cut(s) 205, 295, 391, 886, 1048
HpyCH4III ACNGT 3 cut(s) 347, 644, 915
HpyCH4IV ACGT 2 cut(s) 75, 944
HpyCH4V TGCA 4 cut(s) 53, 632, 787, 1013
HpyF10VI GCNNNNNNNGC 2 cut(s) 389, 398
HpyF3I CTNAG 1 cut(s) 521
HpySE526I ACGT 2 cut(s) 75, 944
Hsp92II CATG 4 cut(s) 106, 151, 428, 547
KspI CCGCGG 1 cut(s) 737
Kzo9I GATC 2 cut(s) 39, 171
LguI GCTCTTC 2 cut(s) 306, 800
LmnI GCTCC 3 cut(s) 156, 698, 745
LpnPI CCDG 9 cut(s) 234, 587, 672, 756, 765, 918, 958, 987, 1048
Lsp1109I GCAGC 1 cut(s) 92
LweI GCATC 2 cut(s) 62, 1000
MaeI CTAG 3 cut(s) 503, 716, 926
MaeII ACGT 2 cut(s) 75, 944
MaeIII GTNAC 3 cut(s) 347, 718, 961
MalI GATC 2 cut(s) 41, 173
MbiI CCGCTC 1 cut(s) 696
MboI GATC 2 cut(s) 39, 171
MboII GAAGA 8 cut(s) 211, 226, 293, 296, 590, 787, 901, 1037
MfeI CAATTG 1 cut(s) 873
MhlI GDGCHC 4 cut(s) 187, 742, 795, 820
MluCI AATT 5 cut(s) 22, 362, 420, 448, 873
MlyI GAGTC 2 cut(s) 239, 318
MroXI GAANNNNTTC 1 cut(s) 420
MseI TTAA 1 cut(s) 318
MslI CAYNNNNRTG 3 cut(s) 58, 180, 459
MspA1I CMGCKG 1 cut(s) 736
MunI CAATTG 1 cut(s) 873
MvnI CGCG 1 cut(s) 736
MwoI GCNNNNNNNGC 2 cut(s) 389, 398
NdeII GATC 2 cut(s) 39, 171
NlaIII CATG 4 cut(s) 106, 151, 428, 547
NlaIV GGNNCC 5 cut(s) 184, 614, 626, 700, 741
NmuCI GTSAC 1 cut(s) 961
PaeR7I CTCGAG 2 cut(s) 560, 881
PceI AGGCCT 2 cut(s) 337, 401
PciSI GCTCTTC 2 cut(s) 306, 800
PdmI GAANNNNTTC 1 cut(s) 420
PfeI GAWTC 1 cut(s) 87
PkrI GCNGC 1 cut(s) 82
PleI GAGTC 2 cut(s) 239, 318
PpsI GAGTC 2 cut(s) 239, 318
Ppu21I YACGTR 1 cut(s) 76
PshAI GACNNNNGTC 1 cut(s) 249
Psp124BI GAGCTC 1 cut(s) 795
PspN4I GGNNCC 5 cut(s) 184, 614, 626, 700, 741
PspPI GGNCC 2 cut(s) 251, 613
PspXI VCTCGAGB 2 cut(s) 560, 881
RsaI GTAC 4 cut(s) 137, 429, 465, 912
RsaNI GTAC 4 cut(s) 136, 428, 464, 911
RseI CAYNNNNRTG 3 cut(s) 58, 180, 459
SacI GAGCTC 1 cut(s) 795
SacII CCGCGG 1 cut(s) 737
SapI GCTCTTC 2 cut(s) 306, 800
SaqAI TTAA 1 cut(s) 318
SatI GCNGC 1 cut(s) 81
Sau3AI GATC 2 cut(s) 39, 171
Sau96I GGNCC 2 cut(s) 251, 613
SchI GAGTC 2 cut(s) 239, 318
SduI GDGCHC 4 cut(s) 187, 742, 795, 820
SfaNI GCATC 2 cut(s) 62, 1000
SfcI CTRYAG 1 cut(s) 684
Sfr274I CTCGAG 2 cut(s) 560, 881
Sfr303I CCGCGG 1 cut(s) 737
SgrBI CCGCGG 1 cut(s) 737
SinI GGWCC 1 cut(s) 251
SlaI CTCGAG 2 cut(s) 560, 881
SmiMI CAYNNNNRTG 3 cut(s) 58, 180, 459
SmlI CTYRAG 3 cut(s) 537, 560, 881
SmoI CTYRAG 3 cut(s) 537, 560, 881
SnaBI TACGTA 1 cut(s) 76
SpeI ACTAGT 1 cut(s) 715
Sse9I AATT 5 cut(s) 22, 362, 420, 448, 873
SseBI AGGCCT 2 cut(s) 337, 401
SsiI CCGC 5 cut(s) 696, 734, 736, 923, 1007
SspMI CTAG 3 cut(s) 503, 716, 926
SstI GAGCTC 1 cut(s) 795
StuI AGGCCT 2 cut(s) 337, 401
StyI CCWWGG 1 cut(s) 496
TaaI ACNGT 3 cut(s) 347, 644, 915
TaiI ACGT 2 cut(s) 78, 947
TaqI TCGA 3 cut(s) 170, 561, 882
TasI AATT 5 cut(s) 22, 362, 420, 448, 873
TatI WGTACW 1 cut(s) 463
TfiI GAWTC 1 cut(s) 87
Tru1I TTAA 1 cut(s) 318
Tru9I TTAA 1 cut(s) 318
TseFI GTSAC 1 cut(s) 961
TseI GCWGC 1 cut(s) 80
Tsp45I GTSAC 1 cut(s) 961
TspDTI ATGAA 4 cut(s) 16, 27, 277, 413
VpaK11BI GGWCC 1 cut(s) 251
XapI RAATTY 2 cut(s) 22, 448
XbaI TCTAGA 1 cut(s) 502
XcmI CCANNNNNNNNNTGG 2 cut(s) 494, 1077
XhoI CTCGAG 2 cut(s) 560, 881
XmiI GTMKAC 2 cut(s) 646, 660
XmnI GAANNNNTTC 1 cut(s) 420
XspI CTAG 3 cut(s) 503, 716, 926
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.