Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0000676

Physical Location & Seq

Genomic Coordinates Reverse (-)

30542406 .. 30543440

Gene Structure 1035 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG302800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

ATGGTCACAAATATCCTGCGGACAACAGCATACGATCCTACCCGGCGCGTGTGCGCCCGTTTTTTTGGGGAACAGTGGGCCACGCTCTCGGCTTTGATGGCCACCTTTGCGGTCTCTGGGTTAATGCACGAGGTTACTTATTACTATCTCACGCGCGTGCAGCCCACGTGGGAAGTGACGTGGTTTTTTGTGCTACATGGGGCTTGCGTGGTGGTTGAGGTGGATGTGAAGAAGGCGGTTGCCAGCTGGTGGAGGTTGAACAGATTGCAACAGAAACATCTCGAAAACAAGCAAGAACCGGCTTCACCAGCTGATACCAACTTGGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MBOAT_2

Protein Analysis

109

Amino Acids

12.58

Weight (kDa)

8.69

Isoelectric Point (pI)

46.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MBOAT_2	PF13813	2 - 64	7.8e-10	Membrane bound O-acyl transferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000676)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34490 AT1G34500 AT1G34520 AT5G51420 AT5G55320 AT5G55330 AT5G55340 AT5G55350 AT5G55360 AT5G55370 AT5G55380
fragaria_vesca	FvH4_1g25220 FvH4_2g09840
malus_domestica	MD03G1191100.v1.1 MD03G1191200.v1.1 MD11G1208100.v1.1
prunus_persica	Prupe.4G227200_v2.0.a1 Prupe.4G227400_v2.0.a1
pyrus_communis	pycom03g14430 pycom11g18170 pycom11g18340
rosa_chinensis	RchiOBHm_Chr2g0123061 RchiOBHm_Chr2g0123071 RchiOBHm_Chr2g0123131 RchiOBHm_Chr6g0266191 RchiOBHm_Chr6g0266201 RchiOBHm_Chr6g0266251 RchiOBHm_Chr6g0266341
rosa_laevigata	RLG00000014105 RLG00000014107 RLG00000018729 RLG00000018730 RLG00000023150
rosa_multiflora	Rmu_sc0000168.1_g000022 Rmu_sc0002235.1_g000075 Rmu_sc0003605.1_g000042 Rmu_sc0005573.1_g000002 Rmu_sc0005573.1_g000004 Rmu_sc0009036.1_g000008 Rmu_sc0009589.1_g000002
rosa_roxburghii	Rroxscaffold_2G00120900 Rroxscaffold_2G00120910 Rroxscaffold_6G00397020 Rroxscaffold_7G00201410 Rroxscaffold_7G00201760 Rroxscaffold_7G00201820
rosa_rugosa	Rorug02G0243000 Rorug02G0243100 Rorug03G0217500 Rorug06G0024700
rosa_samantha	Rh2AG302700 Rh2AG302800 Rh2BG310300 Rh2BG310400 Rh2BG310600 Rh2CG289000 Rh2CG289200 Rh2DG326800 Rh3BG302500 Rh3BG302800 Rh3BG303100 Rh3BG303200 Rh6AG145400 Rh6AG148500 Rh6BG146000 Rh6CG142600 Rh6DG130500
rosa_wichuraiana	Rw0G004920 Rw0G004930 Rw2G024180 Rw2G024190 Rw3G023820 Rw3G023880 Rw6G012560 Rw6G012860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	249
AccII	CGCG	3 cut(s)	48, 154, 156
AciI	CCGC	3 cut(s)	19, 110, 236
AclWI	GGATC	1 cut(s)	29
AcoI	YGGCCR	1 cut(s)	99
AcvI	CACGTG	1 cut(s)	168
AfiI	CCNNNNNNNGG	1 cut(s)	249
AgsI	TTSAA	1 cut(s)	259
AjiI	CACGTC	1 cut(s)	180
AleI	CACNNNNGTG	1 cut(s)	155
AluBI	AGCT	2 cut(s)	246, 311
AluI	AGCT	2 cut(s)	246, 311
Alw26I	GTCTC	1 cut(s)	118
AlwI	GGATC	1 cut(s)	29
AoxI	GGCC	2 cut(s)	78, 99
ApeKI	GCWGC	1 cut(s)	160
AspLEI	GCGC	3 cut(s)	48, 56, 156
AspS9I	GGNCC	1 cut(s)	78
AsuC2I	CCSGG	1 cut(s)	43
AsuHPI	GGTGA	1 cut(s)	297
BalI	TGGCCA	1 cut(s)	101
BauI	CACGAG	1 cut(s)	128
BbrPI	CACGTG	1 cut(s)	168
BbvI	GCAGC	1 cut(s)	172
BccI	CCATC	1 cut(s)	91
BcnI	CCSGG	1 cut(s)	43
BcoDI	GTCTC	1 cut(s)	118
BisI	GCNGC	1 cut(s)	161
BlsI	GCNGC	1 cut(s)	162
Bme1390I	CCNGG	1 cut(s)	43
BmgBI	CACGTC	1 cut(s)	180
BmgT120I	GGNCC	1 cut(s)	78
BmrFI	CCNGG	1 cut(s)	43
BpuMI	CCSGG	1 cut(s)	43
BsaAI	YACGTR	1 cut(s)	168
BsaI	GGTCTC	1 cut(s)	118
Bsc4I	CCNNNNNNNGG	1 cut(s)	249
Bse118I	RCCGGY	1 cut(s)	298
BseGI	GGATG	1 cut(s)	229
BseLI	CCNNNNNNNGG	1 cut(s)	249
BseXI	GCAGC	1 cut(s)	172
BsgI	GTGCAG	1 cut(s)	179
Bsh1236I	CGCG	3 cut(s)	48, 154, 156
BshFI	GGCC	2 cut(s)	80, 101
BsiSI	CCGG	2 cut(s)	43, 299
BslI	CCNNNNNNNGG	1 cut(s)	249
BsmAI	GTCTC	1 cut(s)	118
BsnI	GGCC	2 cut(s)	80, 101
Bso31I	GGTCTC	1 cut(s)	118
Bsp143I	GATC	1 cut(s)	34
BspACI	CCGC	3 cut(s)	19, 110, 236
BspANI	GGCC	2 cut(s)	80, 101
BspFNI	CGCG	3 cut(s)	48, 154, 156
BspPI	GGATC	1 cut(s)	29
BspTNI	GGTCTC	1 cut(s)	118
BsrFI	RCCGGY	1 cut(s)	298
BssAI	RCCGGY	1 cut(s)	298
BssMI	GATC	1 cut(s)	34
BssSI	CACGAG	1 cut(s)	128
Bst2BI	CACGAG	1 cut(s)	128
Bst4CI	ACNGT	1 cut(s)	75
BstBAI	YACGTR	1 cut(s)	168
BstC8I	GCNNGC	3 cut(s)	158, 205, 244
BstF5I	GGATG	1 cut(s)	229
BstFNI	CGCG	3 cut(s)	48, 154, 156
BstHHI	GCGC	3 cut(s)	48, 56, 156
BstKTI	GATC	1 cut(s)	37
BstMAI	GTCTC	1 cut(s)	118
BstMBI	GATC	1 cut(s)	34
BstMWI	GCNNNNNNNGC	4 cut(s)	98, 107, 160, 308
BstSCI	CCNGG	1 cut(s)	41
BstUI	CGCG	3 cut(s)	48, 154, 156
BstV1I	GCAGC	1 cut(s)	172
BsuRI	GGCC	2 cut(s)	80, 101
BtrI	CACGTC	1 cut(s)	180
BtsCI	GGATG	1 cut(s)	229
BtsIMutI	CAGTG	1 cut(s)	80
Cac8I	GCNNGC	3 cut(s)	158, 205, 244
CfoI	GCGC	3 cut(s)	48, 56, 156
Cfr10I	RCCGGY	1 cut(s)	298
Cfr13I	GGNCC	1 cut(s)	78
CviAII	CATG	1 cut(s)	197
CviJI	RGCY	9 cut(s)	80, 92, 101, 163, 203, 246, 302, 311, 326
CviKI_1	RGCY	9 cut(s)	80, 92, 101, 163, 203, 246, 302, 311, 326
DpnI	GATC	1 cut(s)	36
DpnII	GATC	1 cut(s)	34
EaeI	YGGCCR	1 cut(s)	99
Eco31I	GGTCTC	1 cut(s)	118
Eco72I	CACGTG	1 cut(s)	168
FaeI	CATG	1 cut(s)	200
FaiI	YATR	2 cut(s)	31, 198
FatI	CATG	1 cut(s)	196
Fnu4HI	GCNGC	1 cut(s)	161
FokI	GGATG	1 cut(s)	236
Fsp4HI	GCNGC	1 cut(s)	161
GlaI	GCGC	3 cut(s)	47, 55, 155
GluI	GCNGC	1 cut(s)	161
HaeIII	GGCC	2 cut(s)	80, 101
HapII	CCGG	2 cut(s)	43, 299
HhaI	GCGC	3 cut(s)	48, 56, 156
Hin1II	CATG	1 cut(s)	200
Hin6I	GCGC	3 cut(s)	46, 54, 154
HinP1I	GCGC	3 cut(s)	46, 54, 154
HpaII	CCGG	2 cut(s)	43, 299
HphI	GGTGA	1 cut(s)	297
Hpy188III	TCNNGA	1 cut(s)	281
HpyAV	CCTTC	1 cut(s)	226
HpyCH4III	ACNGT	1 cut(s)	75
HpyCH4IV	ACGT	2 cut(s)	167, 179
HpyCH4V	TGCA	3 cut(s)	127, 160, 268
HpyF10VI	GCNNNNNNNGC	4 cut(s)	98, 107, 160, 308
HpySE526I	ACGT	2 cut(s)	167, 179
Hsp92II	CATG	1 cut(s)	200
HspAI	GCGC	3 cut(s)	46, 54, 154
Kzo9I	GATC	1 cut(s)	34
LpnPI	CCDG	7 cut(s)	29, 56, 102, 232, 256, 312, 321
Lsp1109I	GCAGC	1 cut(s)	172
MaeII	ACGT	2 cut(s)	167, 179
MaeIII	GTNAC	3 cut(s)	4, 133, 175
MalI	GATC	1 cut(s)	36
MboI	GATC	1 cut(s)	34
MboII	GAAGA	1 cut(s)	241
MlsI	TGGCCA	1 cut(s)	101
MluNI	TGGCCA	1 cut(s)	101
MnlI	CCTC	3 cut(s)	124, 211, 246
Mox20I	TGGCCA	1 cut(s)	101
MscI	TGGCCA	1 cut(s)	101
MseI	TTAA	1 cut(s)	122
MslI	CAYNNNNRTG	1 cut(s)	155
Msp20I	TGGCCA	1 cut(s)	101
MspA1I	CMGCKG	2 cut(s)	246, 311
MspI	CCGG	2 cut(s)	43, 299
MspR9I	CCNGG	1 cut(s)	43
MvnI	CGCG	3 cut(s)	48, 154, 156
MwoI	GCNNNNNNNGC	4 cut(s)	98, 107, 160, 308
NciI	CCSGG	1 cut(s)	43
NdeII	GATC	1 cut(s)	34
NlaIII	CATG	1 cut(s)	200
NmeAIII	GCCGAG	1 cut(s)	68
NmuCI	GTSAC	2 cut(s)	4, 175
OliI	CACNNNNGTG	1 cut(s)	155
PflMI	CCANNNNNTGG	1 cut(s)	249
PkrI	GCNGC	1 cut(s)	162
PmaCI	CACGTG	1 cut(s)	168
PmlI	CACGTG	1 cut(s)	168
Ppu21I	YACGTR	1 cut(s)	168
PspCI	CACGTG	1 cut(s)	168
PspPI	GGNCC	1 cut(s)	78
PvuII	CAGCTG	2 cut(s)	246, 311
RseI	CAYNNNNRTG	1 cut(s)	155
SaqAI	TTAA	1 cut(s)	122
SatI	GCNGC	1 cut(s)	161
Sau3AI	GATC	1 cut(s)	34
Sau96I	GGNCC	1 cut(s)	78
ScrFI	CCNGG	1 cut(s)	43
SetI	ASST	8 cut(s)	107, 135, 170, 182, 222, 248, 257, 313
SmiMI	CAYNNNNRTG	1 cut(s)	155
SsiI	CCGC	3 cut(s)	19, 110, 236
StyD4I	CCNGG	1 cut(s)	41
TaaI	ACNGT	1 cut(s)	75
TaiI	ACGT	2 cut(s)	170, 182
TaqI	TCGA	1 cut(s)	282
Tru1I	TTAA	1 cut(s)	122
Tru9I	TTAA	1 cut(s)	122
TscAI	CASTG	1 cut(s)	80
TseFI	GTSAC	2 cut(s)	4, 175
TseI	GCWGC	1 cut(s)	160
Tsp45I	GTSAC	2 cut(s)	4, 175
TspRI	CASTG	1 cut(s)	80
Van91I	CCANNNNNTGG	1 cut(s)	249

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.