RLG00000018729

Long-chain-alcohol

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000676
Physical Location & Seq
Forward (+)
34659056 .. 34660156
1101 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000018729

Sequence Viewer

Length: 1101 bp
ATGGAGGATGAGCTCAAGAACTTCATCAAGGTATGGATCACAACCATCTTTTGTTTATCTTATTGCCATTACATAGTCTCCAGATTAATCCCTAAGGGCCTGCTTAGGCTCATTTCTCTCCTCCCTGTCTTCTACTTCTTCATCACCACTCCCCTAACTCTCCATTCCTTCCATCTCTGTGGACCCACAACCTTCTTCCTAGTTTGGCTTGGCATCTTCAAGCTCCTCCTCTTCTCCTTTAACCTTGGCCCTCTATCACCACCCCCACCGTCACTCTTCCATTTCATCTCCATAGCTTGCCTCCCCATCAAAATCAAACAAGACCCACTTCGGAAAACACCCCCAAATCCCAAAACCACCCAAAAACCCAGAAACCCAATTGCTCAAAGTGGCACAAAGGGGCTGCCAAACAAGTCAATTGTGGTGGCTGTGAAGGCATTGCTTTTGGGTATGATCATCCATACCTACGAGTACAGATCACATTTGCACCCTTATGTGATCTTAGCCTTGTACTGTTGCCACATGTACCTGGCTCTAGAACTAGTCCTGGTCCTGAGCGCGACTCCGGCTCGAGCTTTTTTCGGATTTGAGCTGGAGCCGCAGTCCAACGAGCCTTACCTCTCCACTTCGCTTCAAGACTTTTGGGGCCGTCGATGGAATCTAATGGTCACGAACATCCTGCGCCCAACGGTATACGATCCCACCCGGCGCGTGTGTGCGCGTGTAGTTGGGAAACGCTGGGCAAGGCTCCCGGCTGTGATGTCCACCTTTGCGGTGTCCGGATTAATGCACGAGGTTATTTATTATTATTTCACGCGCGTGCAGCCCACCTGGGAAGTGATGTGGTTTTTTGTGCTACATGGGGCTTGCGTGGTGGTTGAGGTGGAGGTGAAGAAGGCGGTTACCGGCAGGTGGAGGTTGCACCCGGTGGTTTCGGGGCCGTTGACGTTGGTGTTCTTGGCTGTCACCGGCAACTGGCTGTTCTTTCCTCAGTTGCTCAGGAATGGTGTTGATACAAAGGCTATGGGAGAGTATGCAATTGTGGTGGATTTTGTCAAGGCTAACTTGCCTCATTTAAGTTATTGGCCCAACAAAAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MBOAT_2

Protein Analysis

367

Amino Acids

41.94

Weight (kDa)

9.66

Isoelectric Point (pI)

45.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MBOAT_2 PF13813 199 - 286 7.6e-20 Membrane bound O-acyl transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 900
Acc36I ACCTGC 1 cut(s) 900
AccI GTMKAC 1 cut(s) 693
AccII CGCG 5 cut(s) 560, 711, 721, 817, 819
AccIII TCCGGA 1 cut(s) 779
AciI CCGC 3 cut(s) 599, 773, 899
AclWI GGATC 2 cut(s) 44, 692
AdeI CACNNNGTG 1 cut(s) 928
AfaI GTAC 3 cut(s) 473, 512, 527
AfiI CCNNNNNNNGG 2 cut(s) 912, 975
AflIII ACRYGT 1 cut(s) 522
AgsI TTSAA 2 cut(s) 220, 635
AhlI ACTAGT 1 cut(s) 541
AjnI CCWGG 3 cut(s) 528, 546, 830
AleI CACNNNNGTG 1 cut(s) 818
AluBI AGCT 6 cut(s) 13, 223, 296, 575, 592, 1098
AluI AGCT 6 cut(s) 13, 223, 296, 575, 592, 1098
Alw21I GWGCWC 1 cut(s) 15
Alw26I GTCTC 1 cut(s) 82
AlwI GGATC 2 cut(s) 44, 692
Ama87I CYCGRG 1 cut(s) 570
Aor13HI TCCGGA 1 cut(s) 779
AoxI GGCC 5 cut(s) 97, 247, 646, 938, 1085
ApeKI GCWGC 2 cut(s) 403, 823
AseI ATTAAT 2 cut(s) 86, 785
AspLEI GCGC 5 cut(s) 560, 684, 711, 721, 819
AspS9I GGNCC 7 cut(s) 97, 182, 248, 550, 646, 938, 1086
AsuC2I CCSGG 3 cut(s) 706, 752, 926
AsuHPI GGTGA 4 cut(s) 136, 249, 901, 958
AvaI CYCGRG 1 cut(s) 570
AvaII GGWCC 2 cut(s) 182, 550
AxyI CCTNAGG 1 cut(s) 93
BanII GRGCYC 1 cut(s) 15
BauI CACGAG 1 cut(s) 791
BbsI GAAGAC 1 cut(s) 121
Bbv12I GWGCWC 1 cut(s) 15
BbvI GCAGC 2 cut(s) 390, 835
BccI CCATC 4 cut(s) 53, 180, 314, 648
BceAI ACGGC 2 cut(s) 633, 925
BcgI CGANNNNNNTGC 2 cut(s) 661, 695
BciT130I CCWGG 3 cut(s) 530, 548, 832
BclI TGATCA 1 cut(s) 453
BcnI CCSGG 3 cut(s) 706, 752, 926
BcoDI GTCTC 1 cut(s) 82
BcuI ACTAGT 1 cut(s) 541
BfaI CTAG 3 cut(s) 200, 536, 542
BfuAI ACCTGC 1 cut(s) 900
BisI GCNGC 3 cut(s) 404, 599, 824
BlsI GCNGC 3 cut(s) 405, 600, 825
Bme1390I CCNGG 6 cut(s) 530, 548, 706, 752, 832, 926
Bme18I GGWCC 2 cut(s) 182, 550
BmeT110I CYCGRG 1 cut(s) 570
BmgT120I GGNCC 7 cut(s) 97, 182, 248, 550, 646, 938, 1086
BmiI GGNNCC 5 cut(s) 184, 597, 647, 749, 939
BmrFI CCNGG 6 cut(s) 530, 548, 706, 752, 832, 926
BmsI GCATC 1 cut(s) 222
BpiI GAAGAC 1 cut(s) 121
BplI GAGNNNNNCTC 2 cut(s) 547, 579
BpmI CTGGAG 2 cut(s) 64, 614
Bpu10I CCTNAGC 3 cut(s) 104, 554, 998
BpuMI CCSGG 3 cut(s) 706, 752, 926
BsaJI CCNNGG 2 cut(s) 244, 831
BsaWI WCCGGW 1 cut(s) 779
BsaXI ACNNNNNCTCC 4 cut(s) 62, 92, 587, 617
Bsc4I CCNNNNNNNGG 2 cut(s) 912, 975
Bse118I RCCGGY 2 cut(s) 905, 968
Bse1I ACTGG 1 cut(s) 980
Bse21I CCTNAGG 1 cut(s) 93
Bse3DI GCAATG 1 cut(s) 437
BseAI TCCGGA 1 cut(s) 779
BseBI CCWGG 3 cut(s) 530, 548, 832
BseDI CCNNGG 2 cut(s) 244, 831
BseGI GGATG 3 cut(s) 13, 456, 675
BseLI CCNNNNNNNGG 2 cut(s) 912, 975
BseMI GCAATG 1 cut(s) 437
BseMII CTCAG 3 cut(s) 545, 1004, 1012
BseNI ACTGG 1 cut(s) 980
BseRI GAGGAG 3 cut(s) 110, 215, 218
BseXI GCAGC 2 cut(s) 390, 835
BseYI CCCAGC 1 cut(s) 738
BsgI GTGCAG 1 cut(s) 842
Bsh1236I CGCG 5 cut(s) 560, 711, 721, 817, 819
BshFI GGCC 5 cut(s) 99, 249, 648, 940, 1087
BsiHKAI GWGCWC 1 cut(s) 15
BsiHKCI CYCGRG 1 cut(s) 570
BsiSI CCGG 7 cut(s) 566, 706, 752, 780, 906, 926, 969
BslI CCNNNNNNNGG 2 cut(s) 912, 975
BsmAI GTCTC 1 cut(s) 82
BsnI GGCC 5 cut(s) 99, 249, 648, 940, 1087
BsoBI CYCGRG 1 cut(s) 570
Bsp1286I GDGCHC 1 cut(s) 15
Bsp13I TCCGGA 1 cut(s) 779
Bsp143I GATC 5 cut(s) 36, 453, 476, 498, 697
BspACI CCGC 3 cut(s) 599, 773, 899
BspANI GGCC 5 cut(s) 99, 249, 648, 940, 1087
BspCNI CTCAG 3 cut(s) 546, 1003, 1011
BspEI TCCGGA 1 cut(s) 779
BspFNI CGCG 5 cut(s) 560, 711, 721, 817, 819
BspLI GGNNCC 5 cut(s) 184, 597, 647, 749, 939
BspMI ACCTGC 1 cut(s) 900
BspPI GGATC 2 cut(s) 44, 692
BsrDI GCAATG 1 cut(s) 437
BsrFI RCCGGY 2 cut(s) 905, 968
BsrI ACTGG 1 cut(s) 980
BssAI RCCGGY 2 cut(s) 905, 968
BssECI CCNNGG 2 cut(s) 244, 831
BssMI GATC 5 cut(s) 36, 453, 476, 498, 697
BssNAI GTATAC 1 cut(s) 694
BssSI CACGAG 1 cut(s) 791
BssT1I CCWWGG 1 cut(s) 244
Bst1107I GTATAC 1 cut(s) 694
Bst2BI CACGAG 1 cut(s) 791
Bst2UI CCWGG 3 cut(s) 530, 548, 832
Bst4CI ACNGT 3 cut(s) 270, 515, 691
Bst6I CTCTTC 2 cut(s) 236, 281
BstC8I GCNNGC 4 cut(s) 101, 298, 821, 868
BstDEI CTNAG 6 cut(s) 93, 104, 502, 554, 990, 998
BstEII GGTNACC 1 cut(s) 901
BstF5I GGATG 3 cut(s) 13, 456, 675
BstFNI CGCG 5 cut(s) 560, 711, 721, 817, 819
BstHHI GCGC 5 cut(s) 560, 684, 711, 721, 819
BstKTI GATC 5 cut(s) 39, 456, 479, 501, 700
BstMAI GTCTC 1 cut(s) 82
BstMBI GATC 5 cut(s) 36, 453, 476, 498, 697
BstMWI GCNNNNNNNGC 4 cut(s) 434, 566, 598, 823
BstNI CCWGG 3 cut(s) 530, 548, 832
BstNSI RCATGY 1 cut(s) 526
BstPI GGTNACC 1 cut(s) 901
BstSCI CCNGG 6 cut(s) 528, 546, 704, 750, 830, 924
BstUI CGCG 5 cut(s) 560, 711, 721, 817, 819
BstV1I GCAGC 2 cut(s) 390, 835
BstV2I GAAGAC 1 cut(s) 121
BstXI CCANNNNNNTGG 1 cut(s) 179
BstZ17I GTATAC 1 cut(s) 694
Bsu36I CCTNAGG 1 cut(s) 93
BsuRI GGCC 5 cut(s) 99, 249, 648, 940, 1087
BtsCI GGATG 3 cut(s) 13, 456, 675
BveI ACCTGC 1 cut(s) 900
Cac8I GCNNGC 4 cut(s) 101, 298, 821, 868
CfoI GCGC 5 cut(s) 560, 684, 711, 721, 819
Cfr10I RCCGGY 2 cut(s) 905, 968
Cfr13I GGNCC 7 cut(s) 97, 182, 248, 550, 646, 938, 1086
Csp6I GTAC 3 cut(s) 472, 511, 526
CspCI CAANNNNNGTGG 4 cut(s) 405, 440, 1026, 1061
CviAII CATG 2 cut(s) 523, 860
CviQI GTAC 3 cut(s) 472, 511, 526
DdeI CTNAG 6 cut(s) 93, 104, 502, 554, 990, 998
DpnI GATC 5 cut(s) 38, 455, 478, 500, 699
DpnII GATC 5 cut(s) 36, 453, 476, 498, 697
DraIII CACNNNGTG 1 cut(s) 928
Eam1104I CTCTTC 2 cut(s) 236, 281
EarI CTCTTC 2 cut(s) 236, 281
Ecl136II GAGCTC 1 cut(s) 13
Eco130I CCWWGG 1 cut(s) 244
Eco24I GRGCYC 1 cut(s) 15
Eco47I GGWCC 2 cut(s) 182, 550
Eco53kI GAGCTC 1 cut(s) 13
Eco81I CCTNAGG 1 cut(s) 93
Eco88I CYCGRG 1 cut(s) 570
Eco91I GGTNACC 1 cut(s) 901
EcoICRI GAGCTC 1 cut(s) 13
EcoO109I RGGNCCY 1 cut(s) 97
EcoO65I GGTNACC 1 cut(s) 901
EcoRII CCWGG 3 cut(s) 528, 546, 830
EcoT14I CCWWGG 1 cut(s) 244
EcoT38I GRGCYC 1 cut(s) 15
ErhI CCWWGG 1 cut(s) 244
FaeI CATG 2 cut(s) 526, 863
FalI AAGNNNNNCTT 4 cut(s) 312, 344, 1049, 1081
FatI CATG 2 cut(s) 522, 859
FbaI TGATCA 1 cut(s) 453
FblI GTMKAC 1 cut(s) 693
Fnu4HI GCNGC 3 cut(s) 404, 599, 824
FokI GGATG 3 cut(s) 20, 443, 662
FriOI GRGCYC 1 cut(s) 15
Fsp4HI GCNGC 3 cut(s) 404, 599, 824
FspBI CTAG 3 cut(s) 200, 536, 542
GlaI GCGC 5 cut(s) 559, 683, 710, 720, 818
GluI GCNGC 3 cut(s) 404, 599, 824
GsaI CCCAGC 1 cut(s) 742
GsuI CTGGAG 2 cut(s) 64, 614
HaeIII GGCC 5 cut(s) 99, 249, 648, 940, 1087
HapII CCGG 7 cut(s) 566, 706, 752, 780, 906, 926, 969
HhaI GCGC 5 cut(s) 560, 684, 711, 721, 819
Hin1II CATG 2 cut(s) 526, 863
Hin6I GCGC 5 cut(s) 558, 682, 709, 719, 817
HinP1I GCGC 5 cut(s) 558, 682, 709, 719, 817
HincII GTYRAC 1 cut(s) 945
HindII GTYRAC 1 cut(s) 945
HinfI GANTC 2 cut(s) 562, 658
HpaII CCGG 7 cut(s) 566, 706, 752, 780, 906, 926, 969
HphI GGTGA 4 cut(s) 136, 249, 901, 958
Hpy166II GTNNAC 4 cut(s) 182, 694, 765, 945
Hpy188I TCNGA 2 cut(s) 333, 584
Hpy188III TCNNGA 8 cut(s) 16, 81, 536, 553, 635, 670, 780, 1000
Hpy8I GTNNAC 4 cut(s) 182, 694, 765, 945
Hpy99I CGWCG 1 cut(s) 654
HpyAV CCTTC 4 cut(s) 178, 202, 427, 889
HpyCH4III ACNGT 3 cut(s) 270, 515, 691
HpyCH4IV ACGT 1 cut(s) 947
HpyCH4V TGCA 5 cut(s) 487, 790, 823, 922, 1037
HpyF10VI GCNNNNNNNGC 4 cut(s) 434, 566, 598, 823
HpyF3I CTNAG 6 cut(s) 93, 104, 502, 554, 990, 998
HpySE526I ACGT 1 cut(s) 947
Hsp92II CATG 2 cut(s) 526, 863
HspAI GCGC 5 cut(s) 558, 682, 709, 719, 817
Kpn2I TCCGGA 1 cut(s) 779
Ksp22I TGATCA 1 cut(s) 453
Kzo9I GATC 5 cut(s) 36, 453, 476, 498, 697
LmnI GCTCC 3 cut(s) 228, 595, 753
Lsp1109I GCAGC 2 cut(s) 390, 835
LweI GCATC 1 cut(s) 222
MaeI CTAG 3 cut(s) 200, 536, 542
MaeII ACGT 1 cut(s) 947
MaeIII GTNAC 4 cut(s) 270, 667, 901, 964
MalI GATC 5 cut(s) 38, 455, 478, 500, 699
MboI GATC 5 cut(s) 36, 453, 476, 498, 697
MboII GAAGA 7 cut(s) 121, 130, 187, 208, 223, 268, 904
MfeI CAATTG 3 cut(s) 378, 417, 1038
MhlI GDGCHC 1 cut(s) 15
MluCI AATT 3 cut(s) 378, 417, 1038
MlyI GAGTC 1 cut(s) 556
MmeI TCCRAC 1 cut(s) 630
MroI TCCGGA 1 cut(s) 779
MseI TTAA 4 cut(s) 86, 240, 785, 1076
MslI CAYNNNNRTG 3 cut(s) 177, 492, 818
MspI CCGG 7 cut(s) 566, 706, 752, 780, 906, 926, 969
MspR9I CCNGG 6 cut(s) 530, 548, 706, 752, 832, 926
MunI CAATTG 3 cut(s) 378, 417, 1038
MvaI CCWGG 3 cut(s) 530, 548, 832
MvnI CGCG 5 cut(s) 560, 711, 721, 817, 819
MwoI GCNNNNNNNGC 4 cut(s) 434, 566, 598, 823
NciI CCSGG 3 cut(s) 706, 752, 926
NdeII GATC 5 cut(s) 36, 453, 476, 498, 697
NlaIII CATG 2 cut(s) 526, 863
NlaIV GGNNCC 5 cut(s) 184, 597, 647, 749, 939
NmuCI GTSAC 3 cut(s) 270, 667, 964
NspI RCATGY 1 cut(s) 526
OliI CACNNNNGTG 1 cut(s) 818
PaeR7I CTCGAG 1 cut(s) 570
PaqCI CACCTGC 1 cut(s) 900
PciI ACATGT 1 cut(s) 522
PfeI GAWTC 1 cut(s) 658
PkrI GCNGC 3 cut(s) 405, 600, 825
PleI GAGTC 1 cut(s) 556
PpsI GAGTC 1 cut(s) 556
PscI ACATGT 1 cut(s) 522
PshBI ATTAAT 2 cut(s) 86, 785
Psp124BI GAGCTC 1 cut(s) 15
Psp6I CCWGG 3 cut(s) 528, 546, 830
PspEI GGTNACC 1 cut(s) 901
PspFI CCCAGC 1 cut(s) 738
PspGI CCWGG 3 cut(s) 528, 546, 830
PspN4I GGNNCC 5 cut(s) 184, 597, 647, 749, 939
PspPI GGNCC 7 cut(s) 97, 182, 248, 550, 646, 938, 1086
PspXI VCTCGAGB 1 cut(s) 570
RsaI GTAC 3 cut(s) 473, 512, 527
RsaNI GTAC 3 cut(s) 472, 511, 526
RseI CAYNNNNRTG 3 cut(s) 177, 492, 818
SacI GAGCTC 1 cut(s) 15
SaqAI TTAA 4 cut(s) 86, 240, 785, 1076
SatI GCNGC 3 cut(s) 404, 599, 824
Sau3AI GATC 5 cut(s) 36, 453, 476, 498, 697
Sau96I GGNCC 7 cut(s) 97, 182, 248, 550, 646, 938, 1086
SchI GAGTC 1 cut(s) 556
ScrFI CCNGG 6 cut(s) 530, 548, 706, 752, 832, 926
SduI GDGCHC 1 cut(s) 15
SfaNI GCATC 1 cut(s) 222
Sfr274I CTCGAG 1 cut(s) 570
SinI GGWCC 2 cut(s) 182, 550
SlaI CTCGAG 1 cut(s) 570
SmiMI CAYNNNNRTG 3 cut(s) 177, 492, 818
SmlI CTYRAG 2 cut(s) 14, 570
SmoI CTYRAG 2 cut(s) 14, 570
SpeI ACTAGT 1 cut(s) 541
Sse9I AATT 3 cut(s) 378, 417, 1038
SsiI CCGC 3 cut(s) 599, 773, 899
SspMI CTAG 3 cut(s) 200, 536, 542
SstI GAGCTC 1 cut(s) 15
StyD4I CCNGG 6 cut(s) 528, 546, 704, 750, 830, 924
StyI CCWWGG 1 cut(s) 244
TaaI ACNGT 3 cut(s) 270, 515, 691
TaiI ACGT 1 cut(s) 950
TaqI TCGA 2 cut(s) 571, 652
TasI AATT 3 cut(s) 378, 417, 1038
TatI WGTACW 2 cut(s) 471, 510
TauI GCSGC 1 cut(s) 601
TfiI GAWTC 1 cut(s) 658
Tru1I TTAA 4 cut(s) 86, 240, 785, 1076
Tru9I TTAA 4 cut(s) 86, 240, 785, 1076
TseFI GTSAC 3 cut(s) 270, 667, 964
TseI GCWGC 2 cut(s) 403, 823
Tsp45I GTSAC 3 cut(s) 270, 667, 964
TspDTI ATGAA 3 cut(s) 13, 130, 274
VpaK11BI GGWCC 2 cut(s) 182, 550
VspI ATTAAT 2 cut(s) 86, 785
XbaI TCTAGA 1 cut(s) 535
XceI RCATGY 1 cut(s) 526
XhoI CTCGAG 1 cut(s) 570
XmiI GTMKAC 1 cut(s) 693
XspI CTAG 3 cut(s) 200, 536, 542
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.