RLG00000014105

Long-chain-alcohol

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000676
Physical Location & Seq
Reverse (-)
47313486 .. 47314580
1095 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000014105

Sequence Viewer

Length: 1095 bp
ATGGATGGTGATGAAATCAAAAACTTCATCAAGGTGTGGATCATAGCCATTGCATCTCAATGTTATTGTTATTACGTTGCAGCAAGAATCCCAACAAAGAGCATGATGAGGCTCATCTCTCTCCTCCCAATCTTGTACCTCCTTGTCATGCTCCCCTTGAACCTCCACTCGATCCATCTCGGTGCCCCCTCAGCCTTCTTTCTTGGTTGTCTTGCCATCTTCAAACTCATTCTCTTCTCCTTTGACTCTGGCCATCTATCACCACCCCCGACAAGACTTCTCCACTTCATTTCCATAGCTCTTCTTCCCATCAACATTAAGAGACGCCCCCAAAAGCCTTGCTACCGTTACACTATGACAAAGTTGGTGCCAAACAAATCAATTTTATGGGCAATGAAGGCCTTGCTTTTGGGTGTAGTAATTCTTGTACGCAAGGATTATAGACAGAATTTACATCCATATGTACTCACAGCCTTGTCCCTTTCCCACCTGTACCTTGGTCTAGAAATAGGCTTTGCTCTGAGTGTAGTCTTGCCTCAAGCCATGTTTGGGTTTGATCTCGAGCCACACTTCAACGAGCCTTACTTTTCCACATCTCTTCAGGACTTTTGGGGCCGTAGATGGAACCTTGTAGTCTCAAACACTCTACGGCCCCTTGTATACGATCCGGTGAGGCGTATATCTACAGGCAAGGGCGGAGCCACCTTCGAGCTAACGGTTACGGCAAAACCTTCGCGGACTCCAATTCTGCCGGTCATCTCTGCTTTCACCATCTCGGGTTTCATGCACGAGCTCTTCTTTTACTACGTCACTCGTGCGCGTCCCACAGGGGAAATGATGTGCTTCTTTCTCCTACAAGGTGTGTGCTTGGCAATTGAACTGGAGGTGAAGAAGGCTCTGGCTCATAGGGTACGGTTTCACCCGCTAGTTTCAGGGCTGTTGACGTTGGTGTTTTTAATTGTAACTACCGATTGGCTTTTTTTTCCTCACGTAATCAGAACTGGTGCCGATGCAAAGAGTTTAGGAGAGTGTGCCATTATGATGGATTTTGTGAAGACCAACGGTTCGTTATTGTATTATTGGCAGAAGAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MBOAT_2

Protein Analysis

365

Amino Acids

41.43

Weight (kDa)

9.61

Isoelectric Point (pI)

38.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MBOAT_2 PF13813 188 - 284 2.5e-16 Membrane bound O-acyl transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 182, 367, 1004
AccI GTMKAC 1 cut(s) 660
AccII CGCG 2 cut(s) 736, 820
AciI CCGC 3 cut(s) 696, 736, 923
AclWI GGATC 3 cut(s) 47, 166, 659
AcoI YGGCCR 1 cut(s) 250
AcsI RAATTY 1 cut(s) 448
AcuI CTGAAG 1 cut(s) 584
AcyI GRCGYC 1 cut(s) 325
AfaI GTAC 5 cut(s) 137, 429, 465, 494, 912
AfiI CCNNNNNNNGG 1 cut(s) 549
AgsI TTSAA 4 cut(s) 160, 223, 574, 878
AluBI AGCT 3 cut(s) 299, 712, 793
AluI AGCT 3 cut(s) 299, 712, 793
Alw21I GWGCWC 1 cut(s) 795
Alw26I GTCTC 2 cut(s) 316, 640
AlwI GGATC 3 cut(s) 47, 166, 659
Ama87I CYCGRG 2 cut(s) 560, 775
AoxI GGCC 4 cut(s) 250, 399, 613, 650
ApeKI GCWGC 1 cut(s) 80
ApoI RAATTY 1 cut(s) 448
ArsI GACNNNNNNTTYG 2 cut(s) 1048, 1080
AspLEI GCGC 1 cut(s) 820
AspS9I GGNCC 2 cut(s) 613, 651
AsuHPI GGTGA 6 cut(s) 20, 252, 682, 760, 898, 911
AvaI CYCGRG 2 cut(s) 560, 775
BaeGI GKGCMC 1 cut(s) 187
BalI TGGCCA 1 cut(s) 252
BanI GGYRCC 3 cut(s) 182, 367, 1004
BanII GRGCYC 1 cut(s) 795
BauI CACGAG 2 cut(s) 788, 813
BbsI GAAGAC 1 cut(s) 1061
Bbv12I GWGCWC 1 cut(s) 795
BbvCI CCTCAGC 1 cut(s) 190
BbvI GCAGC 1 cut(s) 92
BccI CCATC 7 cut(s) 183, 224, 261, 317, 615, 779, 1036
BceAI ACGGC 3 cut(s) 600, 665, 738
BcgI CGANNNNNNTGC 2 cut(s) 714, 748
BcoDI GTCTC 2 cut(s) 316, 640
BfaI CTAG 2 cut(s) 503, 926
BfmI CTRYAG 1 cut(s) 684
BisI GCNGC 1 cut(s) 81
BlsI GCNGC 1 cut(s) 82
BmeT110I CYCGRG 2 cut(s) 560, 775
BmgT120I GGNCC 2 cut(s) 613, 651
BmiI GGNNCC 7 cut(s) 184, 369, 614, 626, 653, 700, 1006
BmsI GCATC 2 cut(s) 62, 1000
BpiI GAAGAC 1 cut(s) 1061
BpmI CTGGAG 1 cut(s) 902
Bpu10I CCTNAGC 1 cut(s) 190
BpuEI CTTGAG 1 cut(s) 522
BsaAI YACGTR 1 cut(s) 991
BsaHI GRCGYC 1 cut(s) 325
BsaJI CCNNGG 1 cut(s) 496
BsaWI WCCGGW 1 cut(s) 667
Bsc4I CCNNNNNNNGG 1 cut(s) 549
Bse118I RCCGGY 1 cut(s) 751
Bse1I ACTGG 2 cut(s) 885, 1006
Bse3DI GCAATG 2 cut(s) 48, 399
BseDI CCNNGG 1 cut(s) 496
BseGI GGATG 2 cut(s) 10, 454
BseLI CCNNNNNNNGG 1 cut(s) 549
BseMI GCAATG 2 cut(s) 48, 399
BseMII CTCAG 2 cut(s) 204, 512
BseNI ACTGG 2 cut(s) 885, 1006
BseRI GAGGAG 1 cut(s) 113
BseSI GKGCMC 1 cut(s) 187
BseXI GCAGC 1 cut(s) 92
Bsh1236I CGCG 2 cut(s) 736, 820
BshFI GGCC 4 cut(s) 252, 401, 615, 652
BshNI GGYRCC 3 cut(s) 182, 367, 1004
BsiHKAI GWGCWC 1 cut(s) 795
BsiHKCI CYCGRG 2 cut(s) 560, 775
BsiSI CCGG 2 cut(s) 668, 752
BslFI GGGAC 2 cut(s) 463, 807
BslI CCNNNNNNNGG 1 cut(s) 549
BsmAI GTCTC 2 cut(s) 316, 640
BsmBI CGTCTC 1 cut(s) 316
BsmFI GGGAC 2 cut(s) 463, 807
BsnI GGCC 4 cut(s) 252, 401, 615, 652
BsoBI CYCGRG 2 cut(s) 560, 775
Bsp1286I GDGCHC 2 cut(s) 187, 795
Bsp143I GATC 4 cut(s) 39, 171, 556, 664
BspACI CCGC 3 cut(s) 696, 736, 923
BspANI GGCC 4 cut(s) 252, 401, 615, 652
BspCNI CTCAG 2 cut(s) 203, 513
BspFNI CGCG 2 cut(s) 736, 820
BspLI GGNNCC 7 cut(s) 184, 369, 614, 626, 653, 700, 1006
BspPI GGATC 3 cut(s) 47, 166, 659
BspQI GCTCTTC 2 cut(s) 306, 800
BspT107I GGYRCC 3 cut(s) 182, 367, 1004
BsrDI GCAATG 2 cut(s) 48, 399
BsrFI RCCGGY 1 cut(s) 751
BsrI ACTGG 2 cut(s) 885, 1006
BssAI RCCGGY 1 cut(s) 751
BssECI CCNNGG 1 cut(s) 496
BssMI GATC 4 cut(s) 39, 171, 556, 664
BssNAI GTATAC 1 cut(s) 661
BssNI GRCGYC 1 cut(s) 325
BssSI CACGAG 2 cut(s) 788, 813
BssT1I CCWWGG 1 cut(s) 496
Bst1107I GTATAC 1 cut(s) 661
Bst2BI CACGAG 2 cut(s) 788, 813
Bst4CI ACNGT 4 cut(s) 347, 718, 915, 1064
Bst6I CTCTTC 4 cut(s) 239, 306, 603, 800
BstACI GRCGYC 1 cut(s) 325
BstBAI YACGTR 1 cut(s) 991
BstDEI CTNAG 2 cut(s) 190, 521
BstF5I GGATG 2 cut(s) 10, 454
BstFNI CGCG 2 cut(s) 736, 820
BstHHI GCGC 1 cut(s) 820
BstKTI GATC 4 cut(s) 42, 174, 559, 667
BstMAI GTCTC 2 cut(s) 316, 640
BstMBI GATC 4 cut(s) 39, 171, 556, 664
BstMWI GCNNNNNNNGC 2 cut(s) 191, 398
BstSFI CTRYAG 1 cut(s) 684
BstSLI GKGCMC 1 cut(s) 187
BstUI CGCG 2 cut(s) 736, 820
BstV1I GCAGC 1 cut(s) 92
BstV2I GAAGAC 1 cut(s) 1061
BstXI CCANNNNNNTGG 1 cut(s) 1042
BstZ17I GTATAC 1 cut(s) 661
BsuRI GGCC 4 cut(s) 252, 401, 615, 652
BtsCI GGATG 2 cut(s) 10, 454
CfoI GCGC 1 cut(s) 820
Cfr10I RCCGGY 1 cut(s) 751
Cfr13I GGNCC 2 cut(s) 613, 651
CseI GACGC 2 cut(s) 333, 809
Csp6I GTAC 5 cut(s) 136, 428, 464, 493, 911
CviAII CATG 4 cut(s) 103, 148, 544, 784
CviQI GTAC 5 cut(s) 136, 428, 464, 493, 911
DdeI CTNAG 2 cut(s) 190, 521
DpnI GATC 4 cut(s) 41, 173, 558, 666
DpnII GATC 4 cut(s) 39, 171, 556, 664
EaeI YGGCCR 1 cut(s) 250
Eam1104I CTCTTC 4 cut(s) 239, 306, 603, 800
EarI CTCTTC 4 cut(s) 239, 306, 603, 800
EciI GGCGGA 1 cut(s) 711
Ecl136II GAGCTC 1 cut(s) 793
Eco130I CCWWGG 1 cut(s) 496
Eco147I AGGCCT 1 cut(s) 401
Eco24I GRGCYC 1 cut(s) 795
Eco53kI GAGCTC 1 cut(s) 793
Eco57I CTGAAG 1 cut(s) 584
Eco88I CYCGRG 2 cut(s) 560, 775
EcoICRI GAGCTC 1 cut(s) 793
EcoT14I CCWWGG 1 cut(s) 496
EcoT38I GRGCYC 1 cut(s) 795
ErhI CCWWGG 1 cut(s) 496
Esp3I CGTCTC 1 cut(s) 316
FaeI CATG 4 cut(s) 106, 151, 547, 787
FaqI GGGAC 2 cut(s) 463, 807
FatI CATG 4 cut(s) 102, 147, 543, 783
FauI CCCGC 1 cut(s) 930
FauNDI CATATG 1 cut(s) 460
FblI GTMKAC 1 cut(s) 660
Fnu4HI GCNGC 1 cut(s) 81
FokI GGATG 2 cut(s) 17, 441
FriOI GRGCYC 1 cut(s) 795
Fsp4HI GCNGC 1 cut(s) 81
FspBI CTAG 2 cut(s) 503, 926
GlaI GCGC 1 cut(s) 819
GluI GCNGC 1 cut(s) 81
GsuI CTGGAG 1 cut(s) 902
HaeIII GGCC 4 cut(s) 252, 401, 615, 652
HapII CCGG 2 cut(s) 668, 752
HgaI GACGC 2 cut(s) 333, 809
HhaI GCGC 1 cut(s) 820
Hin1I GRCGYC 1 cut(s) 325
Hin1II CATG 4 cut(s) 106, 151, 547, 787
Hin6I GCGC 1 cut(s) 818
HinP1I GCGC 1 cut(s) 818
HincII GTYRAC 1 cut(s) 942
HindII GTYRAC 1 cut(s) 942
HinfI GANTC 3 cut(s) 87, 245, 739
HpaII CCGG 2 cut(s) 668, 752
HphI GGTGA 6 cut(s) 20, 252, 682, 760, 898, 911
Hpy166II GTNNAC 2 cut(s) 661, 942
Hpy188I TCNGA 2 cut(s) 522, 998
Hpy188III TCNNGA 3 cut(s) 503, 560, 602
Hpy8I GTNNAC 2 cut(s) 661, 942
HpyAV CCTTC 5 cut(s) 205, 391, 715, 741, 886
HpyCH4III ACNGT 4 cut(s) 347, 718, 915, 1064
HpyCH4IV ACGT 4 cut(s) 75, 807, 944, 990
HpyCH4V TGCA 4 cut(s) 53, 80, 787, 1013
HpyF10VI GCNNNNNNNGC 2 cut(s) 191, 398
HpyF3I CTNAG 2 cut(s) 190, 521
HpySE526I ACGT 4 cut(s) 75, 807, 944, 990
Hsp92I GRCGYC 1 cut(s) 325
Hsp92II CATG 4 cut(s) 106, 151, 547, 787
HspAI GCGC 1 cut(s) 818
Kzo9I GATC 4 cut(s) 39, 171, 556, 664
LguI GCTCTTC 2 cut(s) 306, 800
LmnI GCTCC 2 cut(s) 156, 698
Lsp1109I GCAGC 1 cut(s) 92
LweI GCATC 2 cut(s) 62, 1000
MaeI CTAG 2 cut(s) 503, 926
MaeII ACGT 4 cut(s) 75, 807, 944, 990
MaeIII GTNAC 4 cut(s) 347, 718, 808, 961
MalI GATC 4 cut(s) 41, 173, 558, 666
MboI GATC 4 cut(s) 39, 171, 556, 664
MboII GAAGA 8 cut(s) 211, 226, 293, 296, 590, 787, 901, 1066
MfeI CAATTG 1 cut(s) 873
MhlI GDGCHC 2 cut(s) 187, 795
MlsI TGGCCA 1 cut(s) 252
MluCI AATT 7 cut(s) 381, 420, 448, 744, 873, 957, 1090
MluNI TGGCCA 1 cut(s) 252
MlyI GAGTC 2 cut(s) 239, 733
MnlI CCTC 9 cut(s) 102, 134, 149, 173, 199, 546, 666, 877, 996
Mox20I TGGCCA 1 cut(s) 252
MscI TGGCCA 1 cut(s) 252
MseI TTAA 2 cut(s) 318, 956
MslI CAYNNNNRTG 5 cut(s) 32, 58, 180, 459, 1040
Msp20I TGGCCA 1 cut(s) 252
MspI CCGG 2 cut(s) 668, 752
MunI CAATTG 1 cut(s) 873
MvnI CGCG 2 cut(s) 736, 820
MwoI GCNNNNNNNGC 2 cut(s) 191, 398
NdeI CATATG 1 cut(s) 460
NdeII GATC 4 cut(s) 39, 171, 556, 664
NlaIII CATG 4 cut(s) 106, 151, 547, 787
NlaIV GGNNCC 7 cut(s) 184, 369, 614, 626, 653, 700, 1006
NmuCI GTSAC 1 cut(s) 808
PaeR7I CTCGAG 1 cut(s) 560
PceI AGGCCT 1 cut(s) 401
PciSI GCTCTTC 2 cut(s) 306, 800
PfeI GAWTC 1 cut(s) 87
PkrI GCNGC 1 cut(s) 82
PleI GAGTC 2 cut(s) 239, 733
PpsI GAGTC 2 cut(s) 239, 733
Ppu21I YACGTR 1 cut(s) 991
Psp124BI GAGCTC 1 cut(s) 795
PspN4I GGNNCC 7 cut(s) 184, 369, 614, 626, 653, 700, 1006
PspPI GGNCC 2 cut(s) 613, 651
RsaI GTAC 5 cut(s) 137, 429, 465, 494, 912
RsaNI GTAC 5 cut(s) 136, 428, 464, 493, 911
RseI CAYNNNNRTG 5 cut(s) 32, 58, 180, 459, 1040
SacI GAGCTC 1 cut(s) 795
SapI GCTCTTC 2 cut(s) 306, 800
SaqAI TTAA 2 cut(s) 318, 956
SatI GCNGC 1 cut(s) 81
Sau3AI GATC 4 cut(s) 39, 171, 556, 664
Sau96I GGNCC 2 cut(s) 613, 651
SchI GAGTC 2 cut(s) 239, 733
SduI GDGCHC 2 cut(s) 187, 795
SfaNI GCATC 2 cut(s) 62, 1000
SfcI CTRYAG 1 cut(s) 684
Sfr274I CTCGAG 1 cut(s) 560
SlaI CTCGAG 1 cut(s) 560
SmiMI CAYNNNNRTG 5 cut(s) 32, 58, 180, 459, 1040
SmlI CTYRAG 2 cut(s) 537, 560
SmoI CTYRAG 2 cut(s) 537, 560
Sse9I AATT 7 cut(s) 381, 420, 448, 744, 873, 957, 1090
SseBI AGGCCT 1 cut(s) 401
SsiI CCGC 3 cut(s) 696, 736, 923
SspMI CTAG 2 cut(s) 503, 926
SstI GAGCTC 1 cut(s) 795
StuI AGGCCT 1 cut(s) 401
StyI CCWWGG 1 cut(s) 496
TaaI ACNGT 4 cut(s) 347, 718, 915, 1064
TaiI ACGT 4 cut(s) 78, 810, 947, 993
TaqI TCGA 3 cut(s) 170, 561, 708
TasI AATT 7 cut(s) 381, 420, 448, 744, 873, 957, 1090
TatI WGTACW 1 cut(s) 463
TfiI GAWTC 1 cut(s) 87
Tru1I TTAA 2 cut(s) 318, 956
Tru9I TTAA 2 cut(s) 318, 956
TseFI GTSAC 1 cut(s) 808
TseI GCWGC 1 cut(s) 80
Tsp45I GTSAC 1 cut(s) 808
TspDTI ATGAA 5 cut(s) 16, 27, 277, 410, 772
XapI RAATTY 1 cut(s) 448
XbaI TCTAGA 1 cut(s) 502
XcmI CCANNNNNNNNNTGG 1 cut(s) 494
XhoI CTCGAG 1 cut(s) 560
XmiI GTMKAC 1 cut(s) 660
XspI CTAG 2 cut(s) 503, 926
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.