Rh3BG303200

Long-chain-alcohol

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0000676
Physical Location & Seq
Reverse (-)
30640075 .. 30640485
411 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG303200.1

Sequence Viewer

Length: 411 bp
ATGGATCACAACCATCTTATGTCTATCTTATTGCTATTACATAGTCTCCAAATTATCCCAAAGGGTCTGCTCAGGCTCATCTCTCTCCCAGTCTTCTACCTCTTCATCACTGCCCCCCTAGCTCTCCATTCCTTCCATCTCTGTGGACCCATAATCGTCTTCCTAGTTTGGCTTGGCATCTCCAGGCTCCTTCTCTTCTCCTTTAACCTTGGCCCTCTATCACCACCCCCACCTTCACTCTTCCATTTCATCTCCATAGCTTGCCTCCCCATCAAAATCAAACAAGACTCACCTAGAAAAACACCCCCCAATCCCAAAACCACCCAAAATCCCAGAGAGCCAATTGGTCAAAGTGTCACAAAGGAGCTGCCAATTGTGGTAGCTGTGAAGGCATTGCTTTTGGGTATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MBOAT_2

Protein Analysis

136

Amino Acids

15.09

Weight (kDa)

10.03

Isoelectric Point (pI)

51.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 12
AjnI CCWGG 1 cut(s) 182
AluBI AGCT 4 cut(s) 122, 260, 367, 383
AluI AGCT 4 cut(s) 122, 260, 367, 383
Alw26I GTCTC 1 cut(s) 50
AlwI GGATC 1 cut(s) 12
AoxI GGCC 1 cut(s) 211
ApeKI GCWGC 1 cut(s) 367
AspS9I GGNCC 2 cut(s) 146, 212
AsuHPI GGTGA 2 cut(s) 213, 282
AvaII GGWCC 1 cut(s) 146
BbsI GAAGAC 2 cut(s) 85, 151
BbvI GCAGC 1 cut(s) 354
BccI CCATC 3 cut(s) 21, 144, 278
BciT130I CCWGG 1 cut(s) 184
BcoDI GTCTC 1 cut(s) 50
BfaI CTAG 3 cut(s) 119, 164, 294
BisI GCNGC 1 cut(s) 368
BlsI GCNGC 1 cut(s) 369
Bme1390I CCNGG 1 cut(s) 184
Bme18I GGWCC 1 cut(s) 146
BmgT120I GGNCC 2 cut(s) 146, 212
BmiI GGNNCC 2 cut(s) 148, 188
BmrFI CCNGG 1 cut(s) 184
BmrI ACTGGG 1 cut(s) 83
BmsI GCATC 1 cut(s) 186
BmuI ACTGGG 1 cut(s) 83
BpiI GAAGAC 2 cut(s) 85, 151
BpmI CTGGAG 1 cut(s) 166
Bpu10I CCTNAGC 1 cut(s) 71
BsaJI CCNNGG 1 cut(s) 208
BsaXI ACNNNNNCTCC 2 cut(s) 30, 60
Bse1I ACTGG 1 cut(s) 89
Bse3DI GCAATG 1 cut(s) 392
BseBI CCWGG 1 cut(s) 184
BseDI CCNNGG 1 cut(s) 208
BseMI GCAATG 1 cut(s) 392
BseMII CTCAG 1 cut(s) 85
BseNI ACTGG 1 cut(s) 89
BseXI GCAGC 1 cut(s) 354
BshFI GGCC 1 cut(s) 213
BsmAI GTCTC 1 cut(s) 50
BsnI GGCC 1 cut(s) 213
Bsp143I GATC 1 cut(s) 4
BspANI GGCC 1 cut(s) 213
BspCNI CTCAG 1 cut(s) 84
BspLI GGNNCC 2 cut(s) 148, 188
BspPI GGATC 1 cut(s) 12
BsrDI GCAATG 1 cut(s) 392
BsrI ACTGG 1 cut(s) 89
BssECI CCNNGG 1 cut(s) 208
BssMI GATC 1 cut(s) 4
BssT1I CCWWGG 1 cut(s) 208
Bst2UI CCWGG 1 cut(s) 184
Bst6I CTCTTC 3 cut(s) 107, 200, 245
BstC8I GCNNGC 1 cut(s) 262
BstDEI CTNAG 1 cut(s) 71
BstKTI GATC 1 cut(s) 7
BstMAI GTCTC 1 cut(s) 50
BstMBI GATC 1 cut(s) 4
BstMWI GCNNNNNNNGC 2 cut(s) 119, 389
BstNI CCWGG 1 cut(s) 184
BstSCI CCNGG 1 cut(s) 182
BstV1I GCAGC 1 cut(s) 354
BstV2I GAAGAC 2 cut(s) 85, 151
BstXI CCANNNNNNTGG 1 cut(s) 143
BsuRI GGCC 1 cut(s) 213
BtsI GCAGTG 1 cut(s) 108
BtsIMutI CAGTG 1 cut(s) 108
Cac8I GCNNGC 1 cut(s) 262
Cfr13I GGNCC 2 cut(s) 146, 212
CviJI RGCY 9 cut(s) 76, 122, 172, 187, 213, 260, 340, 367, 383
CviKI_1 RGCY 9 cut(s) 76, 122, 172, 187, 213, 260, 340, 367, 383
DdeI CTNAG 1 cut(s) 71
DpnI GATC 1 cut(s) 6
DpnII GATC 1 cut(s) 4
Eam1104I CTCTTC 3 cut(s) 107, 200, 245
EarI CTCTTC 3 cut(s) 107, 200, 245
Eco130I CCWWGG 1 cut(s) 208
Eco47I GGWCC 1 cut(s) 146
EcoRII CCWGG 1 cut(s) 182
EcoT14I CCWWGG 1 cut(s) 208
ErhI CCWWGG 1 cut(s) 208
FaiI YATR 5 cut(s) 20, 42, 152, 257, 407
Fnu4HI GCNGC 1 cut(s) 368
Fsp4HI GCNGC 1 cut(s) 368
FspBI CTAG 3 cut(s) 119, 164, 294
GluI GCNGC 1 cut(s) 368
GsuI CTGGAG 1 cut(s) 166
HaeIII GGCC 1 cut(s) 213
HinfI GANTC 1 cut(s) 287
HphI GGTGA 2 cut(s) 213, 282
Hpy166II GTNNAC 1 cut(s) 146
Hpy8I GTNNAC 1 cut(s) 146
HpyAV CCTTC 4 cut(s) 142, 200, 243, 382
HpyF10VI GCNNNNNNNGC 2 cut(s) 119, 389
HpyF3I CTNAG 1 cut(s) 71
Kzo9I GATC 1 cut(s) 4
LmnI GCTCC 2 cut(s) 192, 364
LpnPI CCDG 5 cut(s) 58, 102, 169, 196, 346
Lsp1109I GCAGC 1 cut(s) 354
LweI GCATC 1 cut(s) 186
MaeI CTAG 3 cut(s) 119, 164, 294
MaeIII GTNAC 1 cut(s) 355
MalI GATC 1 cut(s) 6
MboI GATC 1 cut(s) 4
MboII GAAGA 5 cut(s) 85, 94, 151, 187, 232
MfeI CAATTG 2 cut(s) 342, 372
MluCI AATT 3 cut(s) 51, 342, 372
MlyI GAGTC 1 cut(s) 281
MnlI CCTC 3 cut(s) 110, 225, 275
MseI TTAA 1 cut(s) 204
MslI CAYNNNNRTG 1 cut(s) 141
MspR9I CCNGG 1 cut(s) 184
MunI CAATTG 2 cut(s) 342, 372
MvaI CCWGG 1 cut(s) 184
MwoI GCNNNNNNNGC 2 cut(s) 119, 389
NdeII GATC 1 cut(s) 4
NlaIV GGNNCC 2 cut(s) 148, 188
NmuCI GTSAC 1 cut(s) 355
PkrI GCNGC 1 cut(s) 369
PleI GAGTC 1 cut(s) 281
PpsI GAGTC 1 cut(s) 281
Psp6I CCWGG 1 cut(s) 182
PspGI CCWGG 1 cut(s) 182
PspN4I GGNNCC 2 cut(s) 148, 188
PspPI GGNCC 2 cut(s) 146, 212
RseI CAYNNNNRTG 1 cut(s) 141
SaqAI TTAA 1 cut(s) 204
SatI GCNGC 1 cut(s) 368
Sau3AI GATC 1 cut(s) 4
Sau96I GGNCC 2 cut(s) 146, 212
SchI GAGTC 1 cut(s) 281
ScrFI CCNGG 1 cut(s) 184
SetI ASST 8 cut(s) 102, 124, 210, 235, 262, 295, 369, 385
SfaNI GCATC 1 cut(s) 186
SinI GGWCC 1 cut(s) 146
SmiMI CAYNNNNRTG 1 cut(s) 141
Sse9I AATT 3 cut(s) 51, 342, 372
SspMI CTAG 3 cut(s) 119, 164, 294
StyD4I CCNGG 1 cut(s) 182
StyI CCWWGG 1 cut(s) 208
TasI AATT 3 cut(s) 51, 342, 372
Tru1I TTAA 1 cut(s) 204
Tru9I TTAA 1 cut(s) 204
TscAI CASTG 1 cut(s) 115
TseFI GTSAC 1 cut(s) 355
TseI GCWGC 1 cut(s) 367
Tsp45I GTSAC 1 cut(s) 355
TspDTI ATGAA 2 cut(s) 94, 238
TspRI CASTG 1 cut(s) 115
VpaK11BI GGWCC 1 cut(s) 146
XspI CTAG 3 cut(s) 119, 164, 294
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.