Rh2CG289000

Long-chain-alcohol

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0000676
Physical Location & Seq
Forward (+)
32586732 .. 32588183
1452 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG289000.1

Sequence Viewer

Length: 1098 bp
ATGGAGGGTGAGCTCAAGAACTTCATCAAGGTATGGATCACAGCCATTTTATGTCTATCTTACTGTCACTACACAGTCTCAAGATTAATCCCAAAGGGTTGGCTGAGGCTCATCTCTCTCCTTCCTGTCTTCTACCTATTCATCTCCATGCCCCTAAATCTCCATTCCTTCCATCTTTGTGCACTCACAACTTTCTTTTTAGTTTGGCTTGGCCTCTTCAAGCTCCTCCTCTTCTCCTTTGGCCTAGGCCCTTTGTCACCACCCCCACCATCAGTCTTCCATTTCATCTGCATAGCTTGCCTCCCCATCAAAATCAAACAAAAATCACCTCCAAAATCACTCCCAAATCCCAGAACCACTCAAAAACCCAAAAAATCTGTGAACCCAATTGGTCAACTTGTCACAAAGGGACTGCCCAATAAGTCAATTTTGTTGGCCGTTAAGGCCCTGGTATTGGGTGTGGTTATTCGTACGTACGAGTACAAACCACGTTTACACCCGTATGTGATCCTACTCTTGTGCTGTTGCCATGTGTACTTGGGAGTAGAAATAGTCCTATTTTTGTGTGCAGCCCCAGCTCGAGCCATTTTTGAGTTCGAGCTGGAACATCAGTTCAATGAACCTTACCTCTCCACTTCGCTTCAAGACTTTTGGGGCAGGCGATGGAATTTAATGGTCACGAAAATTCTACGCCCTACTGCATACGATCCCATCCGACATATGTGTGCACGCATAGTTGGGGCACGGTGGGCAAGGCTCCTGGCTACCATGTCGACCTTTGTTGTATCTGGGCTAATGCACGAGGTGATTTATTACTATCTCACGCGTGTGCAGCCCACGTGGGAAGTAACGTGTTTTTTTGTTTTACAAGGGGCATGCATGGTGGTTGAGGTGGAGATGAAGAAGGCGGAAACCGGCAAATGGTTGTTGCACCCGGCGATTTCGGGGTTGTTGACATTGGTGTTCCTGGCTGTCACTGCCAACTGGCTGTTCTTTCCTCAGTTGCTGAGGAATGGTGTTGATATAAAGGCTTTAGGAGAGTATGAAATTATGGTGGATTTTGTCAAGTCTAACTTACCCCATTATCAATCTCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MBOAT_2

Protein Analysis

365

Amino Acids

41.77

Weight (kDa)

9.42

Isoelectric Point (pI)

42.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MBOAT_2 PF13813 203 - 288 2e-19 Membrane bound O-acyl transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 773
AccII CGCG 1 cut(s) 826
AciI CCGC 1 cut(s) 908
AclWI GGATC 3 cut(s) 44, 502, 701
AcoI YGGCCR 1 cut(s) 435
AcsI RAATTY 2 cut(s) 667, 684
AcvI CACGTG 1 cut(s) 840
AdeI CACNNNGTG 1 cut(s) 805
AfaI GTAC 4 cut(s) 472, 476, 482, 536
AfiI CCNNNNNNNGG 2 cut(s) 454, 921
AflIII ACRYGT 2 cut(s) 824, 851
AgsI TTSAA 3 cut(s) 220, 616, 644
AjnI CCWGG 3 cut(s) 447, 759, 966
AjuI GAANNNNNNNTTGG 2 cut(s) 974, 1006
AleI CACNNNNGTG 1 cut(s) 827
AloI GAACNNNNNNTCC 2 cut(s) 596, 628
AluBI AGCT 5 cut(s) 13, 223, 296, 578, 601
AluI AGCT 5 cut(s) 13, 223, 296, 578, 601
Alw21I GWGCWC 3 cut(s) 15, 184, 730
Alw26I GTCTC 1 cut(s) 82
Alw44I GTGCAC 2 cut(s) 180, 726
AlwI GGATC 3 cut(s) 44, 502, 701
AlwNI CAGNNNCTG 1 cut(s) 1006
Ama87I CYCGRG 1 cut(s) 579
AoxI GGCC 5 cut(s) 211, 241, 247, 435, 444
ApaLI GTGCAC 2 cut(s) 180, 726
ApeKI GCWGC 2 cut(s) 569, 832
ApoI RAATTY 2 cut(s) 667, 684
AseI ATTAAT 1 cut(s) 86
AspA2I CCTAGG 1 cut(s) 244
AspS9I GGNCC 2 cut(s) 248, 445
AsuC2I CCSGG 1 cut(s) 935
AsuHPI GGTGA 4 cut(s) 20, 249, 318, 817
AvaI CYCGRG 1 cut(s) 579
AvrII CCTAGG 1 cut(s) 244
BaeGI GKGCMC 3 cut(s) 184, 730, 745
BanII GRGCYC 1 cut(s) 15
BauI CACGAG 1 cut(s) 800
BbrPI CACGTG 1 cut(s) 840
BbsI GAAGAC 2 cut(s) 121, 268
Bbv12I GWGCWC 3 cut(s) 15, 184, 730
BbvCI CCTCAGC 2 cut(s) 104, 1007
BbvI GCAGC 2 cut(s) 581, 844
BccI CCATC 5 cut(s) 180, 277, 314, 657, 719
BceAI ACGGC 1 cut(s) 422
BciT130I CCWGG 3 cut(s) 449, 761, 968
BcnI CCSGG 1 cut(s) 935
BcoDI GTCTC 1 cut(s) 82
BfaI CTAG 1 cut(s) 245
BglI GCCNNNNNGGC 1 cut(s) 443
BisI GCNGC 2 cut(s) 570, 833
BlnI CCTAGG 1 cut(s) 244
BlsI GCNGC 2 cut(s) 571, 834
Bme1390I CCNGG 4 cut(s) 449, 761, 935, 968
BmeT110I CYCGRG 1 cut(s) 579
BmgT120I GGNCC 2 cut(s) 248, 445
BmiI GGNNCC 1 cut(s) 758
BmrFI CCNGG 4 cut(s) 449, 761, 935, 968
BpiI GAAGAC 2 cut(s) 121, 268
Bpu10I CCTNAGC 2 cut(s) 104, 1007
BpuEI CTTGAG 1 cut(s) 64
BpuMI CCSGG 1 cut(s) 935
BsaAI YACGTR 2 cut(s) 474, 840
BsaJI CCNNGG 2 cut(s) 244, 447
Bsc4I CCNNNNNNNGG 2 cut(s) 454, 921
Bse118I RCCGGY 1 cut(s) 914
Bse1I ACTGG 1 cut(s) 989
BseBI CCWGG 3 cut(s) 449, 761, 968
BseDI CCNNGG 2 cut(s) 244, 447
BseGI GGATG 1 cut(s) 711
BseLI CCNNNNNNNGG 2 cut(s) 454, 921
BseMII CTCAG 3 cut(s) 95, 998, 1013
BseNI ACTGG 1 cut(s) 989
BseRI GAGGAG 2 cut(s) 215, 218
BseSI GKGCMC 3 cut(s) 184, 730, 745
BseXI GCAGC 2 cut(s) 581, 844
BseYI CCCAGC 1 cut(s) 574
BsgI GTGCAG 2 cut(s) 588, 851
Bsh1236I CGCG 1 cut(s) 826
BshFI GGCC 5 cut(s) 213, 243, 249, 437, 446
BsiHKAI GWGCWC 3 cut(s) 15, 184, 730
BsiHKCI CYCGRG 1 cut(s) 579
BsiSI CCGG 2 cut(s) 915, 935
BsiWI CGTACG 2 cut(s) 470, 474
BslFI GGGAC 1 cut(s) 423
BslI CCNNNNNNNGG 2 cut(s) 454, 921
BsmAI GTCTC 1 cut(s) 82
BsmFI GGGAC 1 cut(s) 423
BsnI GGCC 5 cut(s) 213, 243, 249, 437, 446
BsoBI CYCGRG 1 cut(s) 579
Bsp1286I GDGCHC 4 cut(s) 15, 184, 730, 745
Bsp143I GATC 3 cut(s) 36, 507, 706
BspACI CCGC 1 cut(s) 908
BspANI GGCC 5 cut(s) 213, 243, 249, 437, 446
BspCNI CTCAG 3 cut(s) 96, 999, 1012
BspFNI CGCG 1 cut(s) 826
BspLI GGNNCC 1 cut(s) 758
BspPI GGATC 3 cut(s) 44, 502, 701
BsrFI RCCGGY 1 cut(s) 914
BsrI ACTGG 1 cut(s) 989
BssAI RCCGGY 1 cut(s) 914
BssECI CCNNGG 2 cut(s) 244, 447
BssMI GATC 3 cut(s) 36, 507, 706
BssSI CACGAG 1 cut(s) 800
BssT1I CCWWGG 1 cut(s) 244
Bst2BI CACGAG 1 cut(s) 800
Bst2UI CCWGG 3 cut(s) 449, 761, 968
Bst4CI ACNGT 3 cut(s) 65, 76, 747
Bst6I CTCTTC 2 cut(s) 221, 236
BstAPI GCANNNNNTGC 1 cut(s) 297
BstBAI YACGTR 2 cut(s) 474, 840
BstC8I GCNNGC 4 cut(s) 298, 659, 730, 877
BstDEI CTNAG 3 cut(s) 104, 999, 1007
BstF5I GGATG 1 cut(s) 711
BstFNI CGCG 1 cut(s) 826
BstKTI GATC 3 cut(s) 39, 510, 709
BstMAI GTCTC 1 cut(s) 82
BstMBI GATC 3 cut(s) 36, 507, 706
BstMWI GCNNNNNNNGC 6 cut(s) 297, 443, 575, 749, 832, 977
BstNI CCWGG 3 cut(s) 449, 761, 968
BstNSI RCATGY 1 cut(s) 879
BstSCI CCNGG 4 cut(s) 447, 759, 933, 966
BstSLI GKGCMC 3 cut(s) 184, 730, 745
BstSNI TACGTA 1 cut(s) 474
BstUI CGCG 1 cut(s) 826
BstV1I GCAGC 2 cut(s) 581, 844
BstV2I GAAGAC 2 cut(s) 121, 268
BstXI CCANNNNNNTGG 1 cut(s) 99
BsuRI GGCC 5 cut(s) 213, 243, 249, 437, 446
BtgZI GCGATG 1 cut(s) 676
BtsCI GGATG 1 cut(s) 711
BtsI GCAGTG 1 cut(s) 975
BtsIMutI CAGTG 1 cut(s) 975
Cac8I GCNNGC 4 cut(s) 298, 659, 730, 877
CaiI CAGNNNCTG 1 cut(s) 1006
Cfr10I RCCGGY 1 cut(s) 914
Cfr13I GGNCC 2 cut(s) 248, 445
Csp6I GTAC 4 cut(s) 471, 475, 481, 535
CviAII CATG 5 cut(s) 148, 530, 769, 876, 880
CviQI GTAC 4 cut(s) 471, 475, 481, 535
DdeI CTNAG 3 cut(s) 104, 999, 1007
DpnI GATC 3 cut(s) 38, 509, 708
DpnII GATC 3 cut(s) 36, 507, 706
DraIII CACNNNGTG 1 cut(s) 805
EaeI YGGCCR 1 cut(s) 435
Eam1104I CTCTTC 2 cut(s) 221, 236
EarI CTCTTC 2 cut(s) 221, 236
EciI GGCGGA 1 cut(s) 923
Ecl136II GAGCTC 1 cut(s) 13
Eco105I TACGTA 1 cut(s) 474
Eco130I CCWWGG 1 cut(s) 244
Eco24I GRGCYC 1 cut(s) 15
Eco53kI GAGCTC 1 cut(s) 13
Eco72I CACGTG 1 cut(s) 840
Eco88I CYCGRG 1 cut(s) 579
EcoICRI GAGCTC 1 cut(s) 13
EcoO109I RGGNCCY 2 cut(s) 248, 445
EcoRII CCWGG 3 cut(s) 447, 759, 966
EcoT14I CCWWGG 1 cut(s) 244
EcoT22I ATGCAT 1 cut(s) 881
EcoT38I GRGCYC 1 cut(s) 15
ErhI CCWWGG 1 cut(s) 244
FaeI CATG 5 cut(s) 151, 533, 772, 879, 883
FalI AAGNNNNNCTT 2 cut(s) 1058, 1090
FaqI GGGAC 1 cut(s) 423
FatI CATG 5 cut(s) 147, 529, 768, 875, 879
FauNDI CATATG 1 cut(s) 720
FblI GTMKAC 1 cut(s) 773
Fnu4HI GCNGC 2 cut(s) 570, 833
FokI GGATG 1 cut(s) 698
FriOI GRGCYC 1 cut(s) 15
Fsp4HI GCNGC 2 cut(s) 570, 833
FspBI CTAG 1 cut(s) 245
GluI GCNGC 2 cut(s) 570, 833
GsaI CCCAGC 1 cut(s) 578
HaeIII GGCC 5 cut(s) 213, 243, 249, 437, 446
HapII CCGG 2 cut(s) 915, 935
Hin1II CATG 5 cut(s) 151, 533, 772, 879, 883
HincII GTYRAC 3 cut(s) 395, 774, 954
HindII GTYRAC 3 cut(s) 395, 774, 954
HpaII CCGG 2 cut(s) 915, 935
HphI GGTGA 4 cut(s) 20, 249, 318, 817
Hpy166II GTNNAC 8 cut(s) 182, 382, 395, 494, 535, 728, 774, 954
Hpy188I TCNGA 1 cut(s) 716
Hpy188III TCNNGA 4 cut(s) 16, 81, 644, 679
Hpy8I GTNNAC 8 cut(s) 182, 382, 395, 494, 535, 728, 774, 954
HpyAV CCTTC 3 cut(s) 131, 178, 898
HpyCH4III ACNGT 3 cut(s) 65, 76, 747
HpyCH4IV ACGT 4 cut(s) 473, 490, 839, 851
HpyCH4V TGCA 9 cut(s) 182, 291, 569, 701, 728, 799, 832, 879, 931
HpyF10VI GCNNNNNNNGC 6 cut(s) 297, 443, 575, 749, 832, 977
HpyF3I CTNAG 3 cut(s) 104, 999, 1007
HpySE526I ACGT 4 cut(s) 473, 490, 839, 851
Hsp92II CATG 5 cut(s) 151, 533, 772, 879, 883
Kzo9I GATC 3 cut(s) 36, 507, 706
LmnI GCTCC 2 cut(s) 228, 762
Lsp1109I GCAGC 2 cut(s) 581, 844
MaeI CTAG 1 cut(s) 245
MaeII ACGT 4 cut(s) 473, 490, 839, 851
MaeIII GTNAC 6 cut(s) 65, 255, 400, 676, 847, 973
MalI GATC 3 cut(s) 38, 509, 708
MboI GATC 3 cut(s) 36, 507, 706
MboII GAAGA 5 cut(s) 121, 208, 223, 268, 913
MfeI CAATTG 1 cut(s) 387
MhlI GDGCHC 4 cut(s) 15, 184, 730, 745
MluCI AATT 5 cut(s) 387, 426, 667, 684, 1047
MluI ACGCGT 1 cut(s) 824
MmeI TCCRAC 1 cut(s) 739
Mph1103I ATGCAT 1 cut(s) 881
MseI TTAA 4 cut(s) 86, 441, 671, 1096
MslI CAYNNNNRTG 5 cut(s) 146, 177, 501, 723, 827
MspI CCGG 2 cut(s) 915, 935
MspR9I CCNGG 4 cut(s) 449, 761, 935, 968
MunI CAATTG 1 cut(s) 387
MvaI CCWGG 3 cut(s) 449, 761, 968
MvnI CGCG 1 cut(s) 826
MwoI GCNNNNNNNGC 6 cut(s) 297, 443, 575, 749, 832, 977
NciI CCSGG 1 cut(s) 935
NdeI CATATG 1 cut(s) 720
NdeII GATC 3 cut(s) 36, 507, 706
NlaIII CATG 5 cut(s) 151, 533, 772, 879, 883
NlaIV GGNNCC 1 cut(s) 758
NmuCI GTSAC 5 cut(s) 65, 255, 400, 676, 973
NsiI ATGCAT 1 cut(s) 881
NspI RCATGY 1 cut(s) 879
OliI CACNNNNGTG 1 cut(s) 827
PaeI GCATGC 1 cut(s) 879
PaeR7I CTCGAG 1 cut(s) 579
Pfl23II CGTACG 2 cut(s) 470, 474
PkrI GCNGC 2 cut(s) 571, 834
PmaCI CACGTG 1 cut(s) 840
PmlI CACGTG 1 cut(s) 840
Ppu21I YACGTR 2 cut(s) 474, 840
PshBI ATTAAT 1 cut(s) 86
Psp124BI GAGCTC 1 cut(s) 15
Psp6I CCWGG 3 cut(s) 447, 759, 966
PspCI CACGTG 1 cut(s) 840
PspFI CCCAGC 1 cut(s) 574
PspGI CCWGG 3 cut(s) 447, 759, 966
PspLI CGTACG 2 cut(s) 470, 474
PspN4I GGNNCC 1 cut(s) 758
PspPI GGNCC 2 cut(s) 248, 445
PspXI VCTCGAGB 1 cut(s) 579
PstNI CAGNNNCTG 1 cut(s) 1006
RsaI GTAC 4 cut(s) 472, 476, 482, 536
RsaNI GTAC 4 cut(s) 471, 475, 481, 535
RseI CAYNNNNRTG 5 cut(s) 146, 177, 501, 723, 827
SacI GAGCTC 1 cut(s) 15
SalI GTCGAC 1 cut(s) 772
SaqAI TTAA 4 cut(s) 86, 441, 671, 1096
SatI GCNGC 2 cut(s) 570, 833
Sau3AI GATC 3 cut(s) 36, 507, 706
Sau96I GGNCC 2 cut(s) 248, 445
ScrFI CCNGG 4 cut(s) 449, 761, 935, 968
SduI GDGCHC 4 cut(s) 15, 184, 730, 745
SfiI GGCCNNNNNGGCC 1 cut(s) 443
Sfr274I CTCGAG 1 cut(s) 579
SlaI CTCGAG 1 cut(s) 579
SmiMI CAYNNNNRTG 5 cut(s) 146, 177, 501, 723, 827
SmlI CTYRAG 3 cut(s) 14, 79, 579
SmoI CTYRAG 3 cut(s) 14, 79, 579
SnaBI TACGTA 1 cut(s) 474
SphI GCATGC 1 cut(s) 879
Sse9I AATT 5 cut(s) 387, 426, 667, 684, 1047
SsiI CCGC 1 cut(s) 908
SspMI CTAG 1 cut(s) 245
SstI GAGCTC 1 cut(s) 15
StyD4I CCNGG 4 cut(s) 447, 759, 933, 966
StyI CCWWGG 1 cut(s) 244
TaaI ACNGT 3 cut(s) 65, 76, 747
TaiI ACGT 4 cut(s) 476, 493, 842, 854
TaqI TCGA 3 cut(s) 580, 597, 773
TasI AATT 5 cut(s) 387, 426, 667, 684, 1047
TatI WGTACW 2 cut(s) 480, 534
Tru1I TTAA 4 cut(s) 86, 441, 671, 1096
Tru9I TTAA 4 cut(s) 86, 441, 671, 1096
TscAI CASTG 1 cut(s) 982
TseFI GTSAC 5 cut(s) 65, 255, 400, 676, 973
TseI GCWGC 2 cut(s) 569, 832
Tsp45I GTSAC 5 cut(s) 65, 255, 400, 676, 973
TspDTI ATGAA 6 cut(s) 13, 130, 274, 633, 914, 1059
TspRI CASTG 1 cut(s) 982
VneI GTGCAC 2 cut(s) 180, 726
VspI ATTAAT 1 cut(s) 86
XapI RAATTY 2 cut(s) 667, 684
XceI RCATGY 1 cut(s) 879
XhoI CTCGAG 1 cut(s) 579
XmaJI CCTAGG 1 cut(s) 244
XmiI GTMKAC 1 cut(s) 773
XspI CTAG 1 cut(s) 245
Zsp2I ATGCAT 1 cut(s) 881
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.