Rw0G004930

Long-chain-alcohol

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00189
OG0000676
Physical Location & Seq
Reverse (-)
39210 .. 40445
1236 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G004930.1

Sequence Viewer

Length: 945 bp
ATGGAGGGTGAGCTCAAGAACTTCATCAAGGTATGGATCACAGCCATTTTATGTCTATCTTACTGTCACTACACAGTCTCAAGATTAATCCCAAAGGTTTGGCTTGGCCTCTTCAAGCTCCTCCTCTTCTCCTTTGGCCTAGGCCCTTTGTCACCACCCCCACCATCAGTCTTCCATTTCATCTCCATAGCTTGCCTCCCCATCAAAATCAAACAAAAATCACCTCCAAAATCACTCCCAAATCCCAGAACCACTCAAAAACCCAAAAAATCTGTGAACCCAATTGGTCAACGTGTCACAAAGGGACTGCCCAATAAGTCAATTTTGTTGGCCGTTAAGGCCTTGGTACTGGGTGTGGTTATTCGTACGTACGAGTACAAACCACGTTTACACCCGTATGTGATCCTAGTCTTGTGTTGTTGCCATGTGTACTTAGGAGTAGAAATACTGGAACATCAGTTCAATGAACCTTACCTCTCCACTTCGCTTCAAGACTTTTGGGGCAGGCGATGGAATTTAATGGTCTCGAAAATTCTACGCCCTACTGTATACGATCCCATCCGATATATGTGTGCACGTATAGTTGGGGCACGGTGGGCAAGGCTCCTGGCTACCATGTCGACCTTTGTTGTATCTGGATTAATGCACGAGGTGATTTATTACTATCTCACGCGTGTGCAGCCCACGTGGGAAGTAACGTGGTTTTTTGTTTTACAAGGGGCATGCATGGTGGTTGAGGTGGAGATGAAGAAGGCGGAAACCGGCACATGGTTGTTGCACCCGGCGATTTCGGGGTTGTTGACATTGGTGTTCTTGGCTGTCACTGCCAACTGGCTGTTCTTTCCTCAGTTGCTGAGGAATGGTGTTGATATAAAGGCTTTAGGAGAGTATGAAATTATGGTGGATTTTGTCAAGTCTAACTTACCCCATTATCATTCTCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MBOAT_2

Protein Analysis

314

Amino Acids

36.0

Weight (kDa)

9.59

Isoelectric Point (pI)

41.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MBOAT_2 PF13813 152 - 237 3.5e-19 Membrane bound O-acyl transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 549, 620
AccII CGCG 1 cut(s) 673
AciI CCGC 1 cut(s) 755
AclWI GGATC 3 cut(s) 44, 397, 548
AcoI YGGCCR 1 cut(s) 330
AcsI RAATTY 2 cut(s) 514, 531
AcvI CACGTG 1 cut(s) 687
AdeI CACNNNGTG 1 cut(s) 652
AfaI GTAC 5 cut(s) 348, 367, 371, 377, 431
AfiI CCNNNNNNNGG 1 cut(s) 768
AflIII ACRYGT 2 cut(s) 292, 671
AgsI TTSAA 3 cut(s) 115, 463, 491
AjnI CCWGG 1 cut(s) 606
AjuI GAANNNNNNNTTGG 2 cut(s) 821, 853
AleI CACNNNNGTG 1 cut(s) 674
AloI GAACNNNNNNTCC 2 cut(s) 443, 475
AluBI AGCT 3 cut(s) 13, 118, 191
AluI AGCT 3 cut(s) 13, 118, 191
Alw21I GWGCWC 2 cut(s) 15, 577
Alw26I GTCTC 2 cut(s) 82, 529
Alw44I GTGCAC 1 cut(s) 573
AlwI GGATC 3 cut(s) 44, 397, 548
AlwNI CAGNNNCTG 1 cut(s) 853
AoxI GGCC 5 cut(s) 106, 136, 142, 330, 339
ApaLI GTGCAC 1 cut(s) 573
ApeKI GCWGC 1 cut(s) 679
ApoI RAATTY 2 cut(s) 514, 531
AseI ATTAAT 2 cut(s) 86, 641
AspA2I CCTAGG 1 cut(s) 139
AspS9I GGNCC 1 cut(s) 143
AsuC2I CCSGG 1 cut(s) 782
AsuHPI GGTGA 4 cut(s) 20, 144, 213, 664
AvrII CCTAGG 1 cut(s) 139
BaeGI GKGCMC 2 cut(s) 577, 592
BanII GRGCYC 1 cut(s) 15
BauI CACGAG 1 cut(s) 647
BbrPI CACGTG 1 cut(s) 687
BbsI GAAGAC 1 cut(s) 163
Bbv12I GWGCWC 2 cut(s) 15, 577
BbvCI CCTCAGC 1 cut(s) 854
BbvI GCAGC 1 cut(s) 691
BccI CCATC 4 cut(s) 172, 209, 504, 566
BceAI ACGGC 1 cut(s) 317
BciT130I CCWGG 1 cut(s) 608
BcnI CCSGG 1 cut(s) 782
BcoDI GTCTC 2 cut(s) 82, 529
BfaI CTAG 2 cut(s) 140, 407
BglI GCCNNNNNGGC 1 cut(s) 338
BisI GCNGC 1 cut(s) 680
BlnI CCTAGG 1 cut(s) 139
BlsI GCNGC 1 cut(s) 681
Bme1390I CCNGG 2 cut(s) 608, 782
BmgT120I GGNCC 1 cut(s) 143
BmiI GGNNCC 1 cut(s) 605
BmrFI CCNGG 2 cut(s) 608, 782
BmrI ACTGGG 1 cut(s) 359
BmuI ACTGGG 1 cut(s) 359
BpiI GAAGAC 1 cut(s) 163
Bpu10I CCTNAGC 1 cut(s) 854
BpuEI CTTGAG 1 cut(s) 64
BpuMI CCSGG 1 cut(s) 782
BsaAI YACGTR 3 cut(s) 369, 578, 687
BsaI GGTCTC 1 cut(s) 529
BsaJI CCNNGG 2 cut(s) 139, 342
Bsc4I CCNNNNNNNGG 1 cut(s) 768
Bse118I RCCGGY 1 cut(s) 761
Bse1I ACTGG 3 cut(s) 354, 453, 836
BseBI CCWGG 1 cut(s) 608
BseDI CCNNGG 2 cut(s) 139, 342
BseGI GGATG 1 cut(s) 558
BseLI CCNNNNNNNGG 1 cut(s) 768
BseMII CTCAG 2 cut(s) 845, 860
BseNI ACTGG 3 cut(s) 354, 453, 836
BseRI GAGGAG 2 cut(s) 110, 113
BseSI GKGCMC 2 cut(s) 577, 592
BseXI GCAGC 1 cut(s) 691
BsgI GTGCAG 1 cut(s) 698
Bsh1236I CGCG 1 cut(s) 673
BshFI GGCC 5 cut(s) 108, 138, 144, 332, 341
BsiHKAI GWGCWC 2 cut(s) 15, 577
BsiSI CCGG 2 cut(s) 762, 782
BsiWI CGTACG 2 cut(s) 365, 369
BslFI GGGAC 1 cut(s) 318
BslI CCNNNNNNNGG 1 cut(s) 768
BsmAI GTCTC 2 cut(s) 82, 529
BsmFI GGGAC 1 cut(s) 318
BsnI GGCC 5 cut(s) 108, 138, 144, 332, 341
Bso31I GGTCTC 1 cut(s) 529
Bsp1286I GDGCHC 3 cut(s) 15, 577, 592
Bsp143I GATC 3 cut(s) 36, 402, 553
BspACI CCGC 1 cut(s) 755
BspANI GGCC 5 cut(s) 108, 138, 144, 332, 341
BspCNI CTCAG 2 cut(s) 846, 859
BspFNI CGCG 1 cut(s) 673
BspLI GGNNCC 1 cut(s) 605
BspPI GGATC 3 cut(s) 44, 397, 548
BspTNI GGTCTC 1 cut(s) 529
BsrFI RCCGGY 1 cut(s) 761
BsrI ACTGG 3 cut(s) 354, 453, 836
BssAI RCCGGY 1 cut(s) 761
BssECI CCNNGG 2 cut(s) 139, 342
BssMI GATC 3 cut(s) 36, 402, 553
BssNAI GTATAC 1 cut(s) 550
BssSI CACGAG 1 cut(s) 647
BssT1I CCWWGG 2 cut(s) 139, 342
Bst1107I GTATAC 1 cut(s) 550
Bst2BI CACGAG 1 cut(s) 647
Bst2UI CCWGG 1 cut(s) 608
Bst4CI ACNGT 4 cut(s) 65, 76, 547, 594
Bst6I CTCTTC 2 cut(s) 116, 131
BstBAI YACGTR 3 cut(s) 369, 578, 687
BstC8I GCNNGC 3 cut(s) 193, 506, 724
BstDEI CTNAG 3 cut(s) 433, 846, 854
BstF5I GGATG 1 cut(s) 558
BstFNI CGCG 1 cut(s) 673
BstKTI GATC 3 cut(s) 39, 405, 556
BstMAI GTCTC 2 cut(s) 82, 529
BstMBI GATC 3 cut(s) 36, 402, 553
BstMWI GCNNNNNNNGC 4 cut(s) 338, 596, 679, 824
BstNI CCWGG 1 cut(s) 608
BstNSI RCATGY 1 cut(s) 726
BstSCI CCNGG 2 cut(s) 606, 780
BstSLI GKGCMC 2 cut(s) 577, 592
BstSNI TACGTA 1 cut(s) 369
BstUI CGCG 1 cut(s) 673
BstV1I GCAGC 1 cut(s) 691
BstV2I GAAGAC 1 cut(s) 163
BstXI CCANNNNNNTGG 1 cut(s) 99
BstZ17I GTATAC 1 cut(s) 550
BsuRI GGCC 5 cut(s) 108, 138, 144, 332, 341
BtgZI GCGATG 1 cut(s) 523
BtsCI GGATG 1 cut(s) 558
BtsI GCAGTG 1 cut(s) 822
BtsIMutI CAGTG 1 cut(s) 822
Cac8I GCNNGC 3 cut(s) 193, 506, 724
CaiI CAGNNNCTG 1 cut(s) 853
Cfr10I RCCGGY 1 cut(s) 761
Cfr13I GGNCC 1 cut(s) 143
Csp6I GTAC 5 cut(s) 347, 366, 370, 376, 430
CviAII CATG 5 cut(s) 425, 616, 723, 727, 768
CviQI GTAC 5 cut(s) 347, 366, 370, 376, 430
DdeI CTNAG 3 cut(s) 433, 846, 854
DpnI GATC 3 cut(s) 38, 404, 555
DpnII GATC 3 cut(s) 36, 402, 553
DraIII CACNNNGTG 1 cut(s) 652
EaeI YGGCCR 1 cut(s) 330
Eam1104I CTCTTC 2 cut(s) 116, 131
EarI CTCTTC 2 cut(s) 116, 131
EciI GGCGGA 1 cut(s) 770
Ecl136II GAGCTC 1 cut(s) 13
Eco105I TACGTA 1 cut(s) 369
Eco130I CCWWGG 2 cut(s) 139, 342
Eco147I AGGCCT 1 cut(s) 341
Eco24I GRGCYC 1 cut(s) 15
Eco31I GGTCTC 1 cut(s) 529
Eco53kI GAGCTC 1 cut(s) 13
Eco72I CACGTG 1 cut(s) 687
EcoICRI GAGCTC 1 cut(s) 13
EcoO109I RGGNCCY 1 cut(s) 143
EcoRII CCWGG 1 cut(s) 606
EcoT14I CCWWGG 2 cut(s) 139, 342
EcoT22I ATGCAT 1 cut(s) 728
EcoT38I GRGCYC 1 cut(s) 15
ErhI CCWWGG 2 cut(s) 139, 342
FaeI CATG 5 cut(s) 428, 619, 726, 730, 771
FalI AAGNNNNNCTT 2 cut(s) 905, 937
FaqI GGGAC 1 cut(s) 318
FatI CATG 5 cut(s) 424, 615, 722, 726, 767
FblI GTMKAC 2 cut(s) 549, 620
Fnu4HI GCNGC 1 cut(s) 680
FokI GGATG 1 cut(s) 545
FriOI GRGCYC 1 cut(s) 15
Fsp4HI GCNGC 1 cut(s) 680
FspBI CTAG 2 cut(s) 140, 407
GluI GCNGC 1 cut(s) 680
HaeIII GGCC 5 cut(s) 108, 138, 144, 332, 341
HapII CCGG 2 cut(s) 762, 782
Hin1II CATG 5 cut(s) 428, 619, 726, 730, 771
HincII GTYRAC 3 cut(s) 290, 621, 801
HindII GTYRAC 3 cut(s) 290, 621, 801
HpaII CCGG 2 cut(s) 762, 782
HphI GGTGA 4 cut(s) 20, 144, 213, 664
Hpy166II GTNNAC 8 cut(s) 277, 290, 389, 430, 550, 575, 621, 801
Hpy188I TCNGA 1 cut(s) 563
Hpy188III TCNNGA 5 cut(s) 16, 81, 491, 526, 636
Hpy8I GTNNAC 8 cut(s) 277, 290, 389, 430, 550, 575, 621, 801
HpyAV CCTTC 1 cut(s) 745
HpyCH4III ACNGT 4 cut(s) 65, 76, 547, 594
HpyCH4IV ACGT 6 cut(s) 292, 368, 385, 577, 686, 698
HpyCH4V TGCA 5 cut(s) 575, 646, 679, 726, 778
HpyF10VI GCNNNNNNNGC 4 cut(s) 338, 596, 679, 824
HpyF3I CTNAG 3 cut(s) 433, 846, 854
HpySE526I ACGT 6 cut(s) 292, 368, 385, 577, 686, 698
Hsp92II CATG 5 cut(s) 428, 619, 726, 730, 771
Kzo9I GATC 3 cut(s) 36, 402, 553
LmnI GCTCC 2 cut(s) 123, 609
Lsp1109I GCAGC 1 cut(s) 691
MaeI CTAG 2 cut(s) 140, 407
MaeII ACGT 6 cut(s) 292, 368, 385, 577, 686, 698
MaeIII GTNAC 5 cut(s) 65, 150, 295, 694, 820
MalI GATC 3 cut(s) 38, 404, 555
MboI GATC 3 cut(s) 36, 402, 553
MboII GAAGA 4 cut(s) 103, 118, 163, 760
MfeI CAATTG 1 cut(s) 282
MhlI GDGCHC 3 cut(s) 15, 577, 592
MluCI AATT 5 cut(s) 282, 321, 514, 531, 894
MluI ACGCGT 1 cut(s) 671
Mph1103I ATGCAT 1 cut(s) 728
MseI TTAA 5 cut(s) 86, 336, 518, 641, 943
MslI CAYNNNNRTG 2 cut(s) 396, 674
MspI CCGG 2 cut(s) 762, 782
MspR9I CCNGG 2 cut(s) 608, 782
MunI CAATTG 1 cut(s) 282
MvaI CCWGG 1 cut(s) 608
MvnI CGCG 1 cut(s) 673
MwoI GCNNNNNNNGC 4 cut(s) 338, 596, 679, 824
NciI CCSGG 1 cut(s) 782
NdeII GATC 3 cut(s) 36, 402, 553
NlaIII CATG 5 cut(s) 428, 619, 726, 730, 771
NlaIV GGNNCC 1 cut(s) 605
NmuCI GTSAC 4 cut(s) 65, 150, 295, 820
NsiI ATGCAT 1 cut(s) 728
NspI RCATGY 1 cut(s) 726
OliI CACNNNNGTG 1 cut(s) 674
PaeI GCATGC 1 cut(s) 726
PceI AGGCCT 1 cut(s) 341
Pfl23II CGTACG 2 cut(s) 365, 369
PkrI GCNGC 1 cut(s) 681
PmaCI CACGTG 1 cut(s) 687
PmlI CACGTG 1 cut(s) 687
Ppu21I YACGTR 3 cut(s) 369, 578, 687
PshBI ATTAAT 2 cut(s) 86, 641
Psp124BI GAGCTC 1 cut(s) 15
Psp6I CCWGG 1 cut(s) 606
PspCI CACGTG 1 cut(s) 687
PspGI CCWGG 1 cut(s) 606
PspLI CGTACG 2 cut(s) 365, 369
PspN4I GGNNCC 1 cut(s) 605
PspPI GGNCC 1 cut(s) 143
PstNI CAGNNNCTG 1 cut(s) 853
RsaI GTAC 5 cut(s) 348, 367, 371, 377, 431
RsaNI GTAC 5 cut(s) 347, 366, 370, 376, 430
RseI CAYNNNNRTG 2 cut(s) 396, 674
SacI GAGCTC 1 cut(s) 15
SalI GTCGAC 1 cut(s) 619
SaqAI TTAA 5 cut(s) 86, 336, 518, 641, 943
SatI GCNGC 1 cut(s) 680
Sau3AI GATC 3 cut(s) 36, 402, 553
Sau96I GGNCC 1 cut(s) 143
ScrFI CCNGG 2 cut(s) 608, 782
SduI GDGCHC 3 cut(s) 15, 577, 592
SfiI GGCCNNNNNGGCC 1 cut(s) 338
SmiMI CAYNNNNRTG 2 cut(s) 396, 674
SmlI CTYRAG 2 cut(s) 14, 79
SmoI CTYRAG 2 cut(s) 14, 79
SnaBI TACGTA 1 cut(s) 369
SphI GCATGC 1 cut(s) 726
Sse9I AATT 5 cut(s) 282, 321, 514, 531, 894
SseBI AGGCCT 1 cut(s) 341
SsiI CCGC 1 cut(s) 755
SspMI CTAG 2 cut(s) 140, 407
SstI GAGCTC 1 cut(s) 15
StuI AGGCCT 1 cut(s) 341
StyD4I CCNGG 2 cut(s) 606, 780
StyI CCWWGG 2 cut(s) 139, 342
TaaI ACNGT 4 cut(s) 65, 76, 547, 594
TaiI ACGT 6 cut(s) 295, 371, 388, 580, 689, 701
TaqI TCGA 2 cut(s) 527, 620
TasI AATT 5 cut(s) 282, 321, 514, 531, 894
TatI WGTACW 2 cut(s) 375, 429
Tru1I TTAA 5 cut(s) 86, 336, 518, 641, 943
Tru9I TTAA 5 cut(s) 86, 336, 518, 641, 943
TscAI CASTG 1 cut(s) 829
TseFI GTSAC 4 cut(s) 65, 150, 295, 820
TseI GCWGC 1 cut(s) 679
Tsp45I GTSAC 4 cut(s) 65, 150, 295, 820
TspDTI ATGAA 5 cut(s) 13, 169, 480, 761, 906
TspRI CASTG 1 cut(s) 829
VneI GTGCAC 1 cut(s) 573
VspI ATTAAT 2 cut(s) 86, 641
XapI RAATTY 2 cut(s) 514, 531
XceI RCATGY 1 cut(s) 726
XmaJI CCTAGG 1 cut(s) 139
XmiI GTMKAC 2 cut(s) 549, 620
XspI CTAG 2 cut(s) 140, 407
Zsp2I ATGCAT 1 cut(s) 728
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.