Rmu_sc0009036.1_g000008

Long-chain-alcohol

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009036.1
OG0000676
Physical Location & Seq
Reverse (-)
53612 .. 54484
873 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009036.1_g000008.1.cds

Sequence Viewer

Length: 873 bp
ctgctcaggctcatttctctcctccctgtcttctacctcttcatcaccgcgcccctagcactccattccttccatctctgtggacccacaatcgtcttcctaatctggcttggcatctccaggcttctcctcttctcctttaaccttggccctctatcaccatctcaaccttcactcttccatttcatctccatagcttgcctcctcatcaaaatcaaacaagacctacctagaaaaacacccccaaatcccaaaacccccaaatccaataggtcgaagtgtcacaaaggagctgccaattgtggtagttgtgaaggcattgcttttgggtatgatcattcatacctacgagtacagaccacatttgcacccgtatgtgatcctagccttgtattgttgccacatgtacttgggtctagaaatattctttccccttatcgcgactccagctcgagctgtttttggttcgagctcgagccgcggtccaacaagccttatctctcaacttcgcttcaagacttttggggccgtcgatggaatctaatggtcacaaatatcctgcggccaacagtatacgatcctacccggtgcgtgtgcggacgtttagttggggaaccgtgggccacgctcttggctttgatggccacctttgtggtctgcgggttaatgcacgaggtaacttattactatctcacgtgcgtgcagcccacgtgggaagtgacatggttttttatgctacatggggcttgtgtggatgttgagtcggaggttaagaaggcggttgccggcaggtggaggttgcaccaggtggtttcggggctgttgacgtgtgtgttcttggctgttggtatgtctaaaagatgtacaacttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MBOAT_2

Protein Analysis

290

Amino Acids

32.68

Weight (kDa)

9.18

Isoelectric Point (pI)

57.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 780
Acc36I ACCTGC 1 cut(s) 780
AccI GTMKAC 1 cut(s) 573
AccII CGCG 3 cut(s) 50, 441, 481
AciI CCGC 7 cut(s) 48, 479, 481, 562, 597, 660, 779
AclWI GGATC 2 cut(s) 374, 572
AcoI YGGCCR 2 cut(s) 563, 642
AcvI CACGTG 2 cut(s) 696, 711
AdeI CACNNNGTG 1 cut(s) 808
AfaI GTAC 3 cut(s) 354, 408, 865
AfiI CCNNNNNNNGG 1 cut(s) 792
AflIII ACRYGT 2 cut(s) 403, 827
AgsI TTSAA 1 cut(s) 515
AjiI CACGTC 1 cut(s) 828
AjnI CCWGG 2 cut(s) 119, 804
AleI CACNNNNGTG 2 cut(s) 650, 698
AluBI AGCT 5 cut(s) 197, 293, 450, 456, 472
AluI AGCT 5 cut(s) 197, 293, 450, 456, 472
Alw21I GWGCWC 1 cut(s) 474
AlwI GGATC 2 cut(s) 374, 572
Ama87I CYCGRG 2 cut(s) 451, 473
AoxI GGCC 5 cut(s) 148, 526, 563, 621, 642
ApeKI GCWGC 2 cut(s) 293, 703
AspLEI GCGC 1 cut(s) 52
AspS9I GGNCC 5 cut(s) 83, 149, 483, 526, 621
AsuC2I CCSGG 1 cut(s) 586
AsuHPI GGTGA 2 cut(s) 37, 150
AvaI CYCGRG 2 cut(s) 451, 473
AvaII GGWCC 2 cut(s) 83, 483
BalI TGGCCA 1 cut(s) 644
BanII GRGCYC 1 cut(s) 474
BauI CACGAG 1 cut(s) 671
BbrPI CACGTG 2 cut(s) 696, 711
BbsI GAAGAC 2 cut(s) 22, 88
Bbv12I GWGCWC 1 cut(s) 474
BbvI GCAGC 2 cut(s) 280, 715
BccI CCATC 4 cut(s) 81, 169, 528, 634
BceAI ACGGC 1 cut(s) 513
BciT130I CCWGG 2 cut(s) 121, 806
BclI TGATCA 1 cut(s) 334
BcnI CCSGG 1 cut(s) 586
BfaI CTAG 4 cut(s) 56, 231, 384, 417
BfuAI ACCTGC 1 cut(s) 780
BisI GCNGC 4 cut(s) 294, 479, 563, 704
BlsI GCNGC 4 cut(s) 295, 480, 564, 705
Bme1390I CCNGG 3 cut(s) 121, 586, 806
Bme18I GGWCC 2 cut(s) 83, 483
BmeT110I CYCGRG 2 cut(s) 451, 473
BmgBI CACGTC 1 cut(s) 828
BmgT120I GGNCC 5 cut(s) 83, 149, 483, 526, 621
BmiI GGNNCC 3 cut(s) 85, 527, 615
BmrFI CCNGG 3 cut(s) 121, 586, 806
BmsI GCATC 1 cut(s) 123
BpiI GAAGAC 2 cut(s) 22, 88
BpmI CTGGAG 2 cut(s) 103, 430
Bpu10I CCTNAGC 1 cut(s) 5
BpuMI CCSGG 1 cut(s) 586
BsaAI YACGTR 2 cut(s) 696, 711
BsaJI CCNNGG 3 cut(s) 145, 479, 617
Bsc4I CCNNNNNNNGG 1 cut(s) 792
Bse118I RCCGGY 1 cut(s) 785
Bse3DI GCAATG 1 cut(s) 318
BseBI CCWGG 2 cut(s) 121, 806
BseDI CCNNGG 3 cut(s) 145, 479, 617
BseGI GGATG 1 cut(s) 760
BseLI CCNNNNNNNGG 1 cut(s) 792
BseMI GCAATG 1 cut(s) 318
BseMII CTCAG 1 cut(s) 19
BseRI GAGGAG 3 cut(s) 11, 119, 194
BseXI GCAGC 2 cut(s) 280, 715
BsgI GTGCAG 1 cut(s) 722
Bsh1236I CGCG 3 cut(s) 50, 441, 481
BshFI GGCC 5 cut(s) 150, 528, 565, 623, 644
BsiHKAI GWGCWC 1 cut(s) 474
BsiHKCI CYCGRG 2 cut(s) 451, 473
BsiSI CCGG 2 cut(s) 586, 786
BslI CCNNNNNNNGG 1 cut(s) 792
BsnI GGCC 5 cut(s) 150, 528, 565, 623, 644
BsoBI CYCGRG 2 cut(s) 451, 473
Bsp1286I GDGCHC 1 cut(s) 474
Bsp1407I TGTACA 1 cut(s) 863
Bsp143I GATC 3 cut(s) 334, 379, 577
Bsp68I TCGCGA 1 cut(s) 441
BspACI CCGC 7 cut(s) 48, 479, 481, 562, 597, 660, 779
BspANI GGCC 5 cut(s) 150, 528, 565, 623, 644
BspCNI CTCAG 1 cut(s) 18
BspFNI CGCG 3 cut(s) 50, 441, 481
BspLI GGNNCC 3 cut(s) 85, 527, 615
BspMI ACCTGC 1 cut(s) 780
BspPI GGATC 2 cut(s) 374, 572
BsrDI GCAATG 1 cut(s) 318
BsrFI RCCGGY 1 cut(s) 785
BsrGI TGTACA 1 cut(s) 863
BssAI RCCGGY 1 cut(s) 785
BssECI CCNNGG 3 cut(s) 145, 479, 617
BssMI GATC 3 cut(s) 334, 379, 577
BssNAI GTATAC 1 cut(s) 574
BssSI CACGAG 1 cut(s) 671
BssT1I CCWWGG 1 cut(s) 145
Bst1107I GTATAC 1 cut(s) 574
Bst2BI CACGAG 1 cut(s) 671
Bst2UI CCWGG 2 cut(s) 121, 806
Bst4CI ACNGT 2 cut(s) 571, 618
Bst6I CTCTTC 3 cut(s) 44, 137, 182
BstAUI TGTACA 1 cut(s) 863
BstBAI YACGTR 2 cut(s) 696, 711
BstC8I GCNNGC 3 cut(s) 199, 701, 787
BstDEI CTNAG 1 cut(s) 5
BstDSI CCRYGG 2 cut(s) 479, 617
BstF5I GGATG 1 cut(s) 760
BstFNI CGCG 3 cut(s) 50, 441, 481
BstHHI GCGC 1 cut(s) 52
BstKTI GATC 3 cut(s) 337, 382, 580
BstMBI GATC 3 cut(s) 334, 379, 577
BstMWI GCNNNNNNNGC 4 cut(s) 56, 447, 478, 641
BstNI CCWGG 2 cut(s) 121, 806
BstNSI RCATGY 1 cut(s) 407
BstSCI CCNGG 3 cut(s) 119, 584, 804
BstUI CGCG 3 cut(s) 50, 441, 481
BstV1I GCAGC 2 cut(s) 280, 715
BstV2I GAAGAC 2 cut(s) 22, 88
BstXI CCANNNNNNTGG 3 cut(s) 80, 631, 652
BstZ17I GTATAC 1 cut(s) 574
BsuRI GGCC 5 cut(s) 150, 528, 565, 623, 644
BtgI CCRYGG 2 cut(s) 479, 617
BtrI CACGTC 1 cut(s) 828
BtsCI GGATG 1 cut(s) 760
BtuMI TCGCGA 1 cut(s) 441
BveI ACCTGC 1 cut(s) 780
Cac8I GCNNGC 3 cut(s) 199, 701, 787
CfoI GCGC 1 cut(s) 52
Cfr10I RCCGGY 1 cut(s) 785
Cfr13I GGNCC 5 cut(s) 83, 149, 483, 526, 621
Cfr42I CCGCGG 1 cut(s) 482
CsiI ACCWGGT 1 cut(s) 804
Csp6I GTAC 3 cut(s) 353, 407, 864
CviAII CATG 3 cut(s) 404, 723, 740
CviQI GTAC 3 cut(s) 353, 407, 864
DdeI CTNAG 1 cut(s) 5
DpnI GATC 3 cut(s) 336, 381, 579
DpnII GATC 3 cut(s) 334, 379, 577
DraIII CACNNNGTG 1 cut(s) 808
EaeI YGGCCR 2 cut(s) 563, 642
Eam1104I CTCTTC 3 cut(s) 44, 137, 182
EarI CTCTTC 3 cut(s) 44, 137, 182
Ecl136II GAGCTC 1 cut(s) 472
Eco130I CCWWGG 1 cut(s) 145
Eco24I GRGCYC 1 cut(s) 474
Eco47I GGWCC 2 cut(s) 83, 483
Eco53kI GAGCTC 1 cut(s) 472
Eco72I CACGTG 2 cut(s) 696, 711
Eco88I CYCGRG 2 cut(s) 451, 473
EcoICRI GAGCTC 1 cut(s) 472
EcoRII CCWGG 2 cut(s) 119, 804
EcoT14I CCWWGG 1 cut(s) 145
EcoT38I GRGCYC 1 cut(s) 474
ErhI CCWWGG 1 cut(s) 145
FaeI CATG 3 cut(s) 407, 726, 743
FatI CATG 3 cut(s) 403, 722, 739
FauI CCCGC 1 cut(s) 653
FbaI TGATCA 1 cut(s) 334
FblI GTMKAC 1 cut(s) 573
Fnu4HI GCNGC 4 cut(s) 294, 479, 563, 704
FokI GGATG 1 cut(s) 767
FriOI GRGCYC 1 cut(s) 474
Fsp4HI GCNGC 4 cut(s) 294, 479, 563, 704
FspBI CTAG 4 cut(s) 56, 231, 384, 417
GlaI GCGC 1 cut(s) 51
GluI GCNGC 4 cut(s) 294, 479, 563, 704
GsuI CTGGAG 2 cut(s) 103, 430
HaeIII GGCC 5 cut(s) 150, 528, 565, 623, 644
HapII CCGG 2 cut(s) 586, 786
HhaI GCGC 1 cut(s) 52
Hin1II CATG 3 cut(s) 407, 726, 743
Hin6I GCGC 1 cut(s) 50
HinP1I GCGC 1 cut(s) 50
HincII GTYRAC 1 cut(s) 825
HindII GTYRAC 1 cut(s) 825
HinfI GANTC 3 cut(s) 443, 538, 761
HpaII CCGG 2 cut(s) 586, 786
HphI GGTGA 2 cut(s) 37, 150
Hpy166II GTNNAC 3 cut(s) 83, 574, 825
Hpy188I TCNGA 1 cut(s) 766
Hpy188III TCNNGA 3 cut(s) 417, 440, 515
Hpy8I GTNNAC 3 cut(s) 83, 574, 825
Hpy99I CGWCG 1 cut(s) 534
HpyAV CCTTC 4 cut(s) 79, 180, 308, 769
HpyCH4III ACNGT 2 cut(s) 571, 618
HpyCH4IV ACGT 4 cut(s) 601, 695, 710, 827
HpyCH4V TGCA 4 cut(s) 368, 670, 703, 802
HpyF10VI GCNNNNNNNGC 4 cut(s) 56, 447, 478, 641
HpyF3I CTNAG 1 cut(s) 5
HpySE526I ACGT 4 cut(s) 601, 695, 710, 827
Hsp92II CATG 3 cut(s) 407, 726, 743
HspAI GCGC 1 cut(s) 50
KroI GCCGGC 1 cut(s) 785
KroNI GCCGGC 1 cut(s) 787
Ksp22I TGATCA 1 cut(s) 334
KspI CCGCGG 1 cut(s) 482
Kzo9I GATC 3 cut(s) 334, 379, 577
LmnI GCTCC 1 cut(s) 290
Lsp1109I GCAGC 2 cut(s) 280, 715
LweI GCATC 1 cut(s) 123
MabI ACCWGGT 1 cut(s) 804
MaeI CTAG 4 cut(s) 56, 231, 384, 417
MaeII ACGT 4 cut(s) 601, 695, 710, 827
MaeIII GTNAC 4 cut(s) 281, 547, 676, 718
MalI GATC 3 cut(s) 336, 381, 579
MboI GATC 3 cut(s) 334, 379, 577
MboII GAAGA 5 cut(s) 22, 31, 88, 124, 169
MfeI CAATTG 1 cut(s) 298
MhlI GDGCHC 1 cut(s) 474
MlsI TGGCCA 1 cut(s) 644
MluCI AATT 1 cut(s) 298
MluNI TGGCCA 1 cut(s) 644
MlyI GAGTC 2 cut(s) 437, 770
MmeI TCCRAC 2 cut(s) 510, 744
MnlI CCTC 9 cut(s) 32, 47, 140, 162, 212, 215, 667, 760, 789
Mox20I TGGCCA 1 cut(s) 644
MroNI GCCGGC 1 cut(s) 785
MscI TGGCCA 1 cut(s) 644
MseI TTAA 4 cut(s) 141, 665, 771, 871
MslI CAYNNNNRTG 4 cut(s) 78, 373, 650, 698
Msp20I TGGCCA 1 cut(s) 644
MspA1I CMGCKG 1 cut(s) 481
MspI CCGG 2 cut(s) 586, 786
MspR9I CCNGG 3 cut(s) 121, 586, 806
MunI CAATTG 1 cut(s) 298
MvaI CCWGG 2 cut(s) 121, 806
MvnI CGCG 3 cut(s) 50, 441, 481
MwoI GCNNNNNNNGC 4 cut(s) 56, 447, 478, 641
NaeI GCCGGC 1 cut(s) 787
NciI CCSGG 1 cut(s) 586
NdeII GATC 3 cut(s) 334, 379, 577
NgoMIV GCCGGC 1 cut(s) 785
NlaIII CATG 3 cut(s) 407, 726, 743
NlaIV GGNNCC 3 cut(s) 85, 527, 615
NmuCI GTSAC 3 cut(s) 281, 547, 718
NruI TCGCGA 1 cut(s) 441
NspI RCATGY 1 cut(s) 407
OliI CACNNNNGTG 2 cut(s) 650, 698
PaeR7I CTCGAG 2 cut(s) 451, 473
PaqCI CACCTGC 1 cut(s) 780
PciI ACATGT 1 cut(s) 403
PdiI GCCGGC 1 cut(s) 787
PfeI GAWTC 1 cut(s) 538
PkrI GCNGC 4 cut(s) 295, 480, 564, 705
PleI GAGTC 2 cut(s) 437, 769
PmaCI CACGTG 2 cut(s) 696, 711
PmlI CACGTG 2 cut(s) 696, 711
PpsI GAGTC 2 cut(s) 437, 769
Ppu21I YACGTR 2 cut(s) 696, 711
PscI ACATGT 1 cut(s) 403
Psp124BI GAGCTC 1 cut(s) 474
Psp6I CCWGG 2 cut(s) 119, 804
PspCI CACGTG 2 cut(s) 696, 711
PspGI CCWGG 2 cut(s) 119, 804
PspN4I GGNNCC 3 cut(s) 85, 527, 615
PspPI GGNCC 5 cut(s) 83, 149, 483, 526, 621
PspXI VCTCGAGB 2 cut(s) 451, 473
RruI TCGCGA 1 cut(s) 441
RsaI GTAC 3 cut(s) 354, 408, 865
RsaNI GTAC 3 cut(s) 353, 407, 864
RseI CAYNNNNRTG 4 cut(s) 78, 373, 650, 698
SacI GAGCTC 1 cut(s) 474
SacII CCGCGG 1 cut(s) 482
SaqAI TTAA 4 cut(s) 141, 665, 771, 871
SatI GCNGC 4 cut(s) 294, 479, 563, 704
Sau3AI GATC 3 cut(s) 334, 379, 577
Sau96I GGNCC 5 cut(s) 83, 149, 483, 526, 621
SchI GAGTC 2 cut(s) 437, 770
ScrFI CCNGG 3 cut(s) 121, 586, 806
SduI GDGCHC 1 cut(s) 474
SexAI ACCWGGT 1 cut(s) 804
SfaNI GCATC 1 cut(s) 123
Sfr274I CTCGAG 2 cut(s) 451, 473
Sfr303I CCGCGG 1 cut(s) 482
SgrBI CCGCGG 1 cut(s) 482
SinI GGWCC 2 cut(s) 83, 483
SlaI CTCGAG 2 cut(s) 451, 473
SmiMI CAYNNNNRTG 4 cut(s) 78, 373, 650, 698
SmlI CTYRAG 2 cut(s) 451, 473
SmoI CTYRAG 2 cut(s) 451, 473
Sse9I AATT 1 cut(s) 298
SsiI CCGC 7 cut(s) 48, 479, 481, 562, 597, 660, 779
SspI AATATT 1 cut(s) 424
SspMI CTAG 4 cut(s) 56, 231, 384, 417
SstI GAGCTC 1 cut(s) 474
StyD4I CCNGG 3 cut(s) 119, 584, 804
StyI CCWWGG 1 cut(s) 145
TaaI ACNGT 2 cut(s) 571, 618
TaiI ACGT 4 cut(s) 604, 698, 713, 830
TaqI TCGA 5 cut(s) 275, 452, 468, 474, 532
TasI AATT 1 cut(s) 298
TatI WGTACW 3 cut(s) 352, 406, 863
TauI GCSGC 2 cut(s) 481, 565
TfiI GAWTC 1 cut(s) 538
Tru1I TTAA 4 cut(s) 141, 665, 771, 871
Tru9I TTAA 4 cut(s) 141, 665, 771, 871
TseFI GTSAC 3 cut(s) 281, 547, 718
TseI GCWGC 2 cut(s) 293, 703
Tsp45I GTSAC 3 cut(s) 281, 547, 718
TspDTI ATGAA 3 cut(s) 31, 175, 330
VpaK11BI GGWCC 2 cut(s) 83, 483
XbaI TCTAGA 1 cut(s) 416
XceI RCATGY 1 cut(s) 407
XhoI CTCGAG 2 cut(s) 451, 473
XmiI GTMKAC 1 cut(s) 573
XspI CTAG 4 cut(s) 56, 231, 384, 417
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.