Rroxscaffold_7G00201410

Long-chain-alcohol

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000676
Physical Location & Seq
Forward (+)
49066506 .. 49067402
897 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00201410.1

Sequence Viewer

Length: 897 bp
ATGGATGCAGGTGACGAAATCAACAACTTCGTCAAGGTGTGGATCATAGCCATTGCATCTCAATGTTATTGTTATTATGTAGCAGCAAGAATCCCAACAAAGGGCATGATGAGGTTCATCTCTCTCCTCCCAGTCTTCTGCCTCCTCATCATCCTTCCCTTTAACCTCCACTCAATTCATTTAGGTTGCCCTTCAAGTTTCTTTCTAGTTTGGCTTGCCGTCTTCAAACTCCTCCTCTTCTCCTTTGACTCCGGCCCTATATCGCCACCCCCGACCAGACTTTTCCACTTCATTTCCATAGCTCTTCTTCCCATCCAAACTCAACAAGAAGTTCCCAAGAAGCCCAGTTGCAGTTCTCCTTATACTATTAAAAAGGTGGTGCCAAACAAGTCAGCTTTGTGGGCAATAAAGGCCTTGCTTTTGGGTGTAGTTATTCGTGTATGCCAGGATTATGGAAAAGATTCACACCCTTACGTAATCACAGCCTTATCGTGTACCTACCTCTGCCTTGCTGTGGAAATAGGCTTTGCCATGAGTGTAGCCTTGCCTCGAGCCCTATTCGGGTTGGAACTGGAGTCACACTTCAACGAGCCTTATCTTGCCACCTCTCTTCAAGACTTTTGGGGTCGCAGATGGAACCTCGTGGTCACAAACATTATGCACCCCATCGCATACCATCCTGTAAGGCGTATACTTGGGCCTCGGTGGGGTTCACTTTTAGGTGTCATCTTCACTTTCGCCATCTCAGGTTTCATGCATGAGGTGCTCTTCTATTATGTAACTTGTGCGCGTCCCACTGGCGAAATGATGTGCTTCTTTGTCCTACAAGGTGTGTGCTTGGTGATTGAGGTGGAGGTGAAGAAGGCTGTGGCTCACAAGCTGCGGTTTCACCCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MBOAT_2

Protein Analysis

298

Amino Acids

33.65

Weight (kDa)

9.03

Isoelectric Point (pI)

52.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MBOAT_2 PF13813 193 - 274 1.6e-19 Membrane bound O-acyl transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 379
AccI GTMKAC 1 cut(s) 691
AccII CGCG 1 cut(s) 790
AciI CCGC 1 cut(s) 883
AclWI GGATC 1 cut(s) 50
AfaI GTAC 1 cut(s) 496
AfiI CCNNNNNNNGG 5 cut(s) 100, 101, 514, 561, 707
AgsI TTSAA 4 cut(s) 195, 226, 586, 614
AjnI CCWGG 1 cut(s) 444
AluBI AGCT 3 cut(s) 302, 395, 880
AluI AGCT 3 cut(s) 302, 395, 880
Alw21I GWGCWC 1 cut(s) 768
AlwI GGATC 1 cut(s) 50
Ama87I CYCGRG 1 cut(s) 549
AoxI GGCC 3 cut(s) 253, 411, 698
ApeKI GCWGC 2 cut(s) 83, 880
Asp700I GAANNNNTTC 1 cut(s) 460
AspLEI GCGC 1 cut(s) 790
AspS9I GGNCC 2 cut(s) 254, 698
AsuHPI GGTGA 4 cut(s) 23, 853, 868, 881
AvaI CYCGRG 1 cut(s) 549
BanI GGYRCC 1 cut(s) 379
BanII GRGCYC 1 cut(s) 556
BauI CACGAG 1 cut(s) 641
BbsI GAAGAC 2 cut(s) 127, 214
Bbv12I GWGCWC 1 cut(s) 768
BbvI GCAGC 2 cut(s) 95, 867
BccI CCATC 5 cut(s) 320, 627, 674, 684, 749
BceAI ACGGC 1 cut(s) 203
BciT130I CCWGG 1 cut(s) 446
BfaI CTAG 2 cut(s) 206, 895
BisI GCNGC 2 cut(s) 84, 881
BlsI GCNGC 2 cut(s) 85, 882
Bme1390I CCNGG 1 cut(s) 446
BmeT110I CYCGRG 1 cut(s) 549
BmgT120I GGNCC 2 cut(s) 254, 698
BmiI GGNNCC 2 cut(s) 381, 638
BmrFI CCNGG 1 cut(s) 446
BmrI ACTGGG 2 cut(s) 125, 339
BmsI GCATC 1 cut(s) 65
BmuI ACTGGG 2 cut(s) 125, 339
BpiI GAAGAC 2 cut(s) 127, 214
BpmI CTGGAG 1 cut(s) 593
BsaAI YACGTR 1 cut(s) 475
BsaJI CCNNGG 1 cut(s) 701
Bsc4I CCNNNNNNNGG 5 cut(s) 100, 101, 514, 561, 707
Bse1I ACTGG 4 cut(s) 131, 345, 576, 802
Bse3DI GCAATG 1 cut(s) 51
BseBI CCWGG 1 cut(s) 446
BseDI CCNNGG 1 cut(s) 701
BseGI GGATG 4 cut(s) 10, 150, 312, 676
BseLI CCNNNNNNNGG 5 cut(s) 100, 101, 514, 561, 707
BseMI GCAATG 1 cut(s) 51
BseMII CTCAG 1 cut(s) 759
BseNI ACTGG 4 cut(s) 131, 345, 576, 802
BseRI GAGGAG 4 cut(s) 116, 134, 221, 224
BseXI GCAGC 2 cut(s) 95, 867
Bsh1236I CGCG 1 cut(s) 790
BshFI GGCC 3 cut(s) 255, 413, 700
BshNI GGYRCC 1 cut(s) 379
BsiHKAI GWGCWC 1 cut(s) 768
BsiHKCI CYCGRG 1 cut(s) 549
BsiSI CCGG 1 cut(s) 252
BslFI GGGAC 1 cut(s) 777
BslI CCNNNNNNNGG 5 cut(s) 100, 101, 514, 561, 707
BsmFI GGGAC 1 cut(s) 777
BsnI GGCC 3 cut(s) 255, 413, 700
BsoBI CYCGRG 1 cut(s) 549
Bsp1286I GDGCHC 2 cut(s) 556, 768
Bsp143I GATC 1 cut(s) 42
BspACI CCGC 1 cut(s) 883
BspANI GGCC 3 cut(s) 255, 413, 700
BspCNI CTCAG 1 cut(s) 758
BspFNI CGCG 1 cut(s) 790
BspLI GGNNCC 2 cut(s) 381, 638
BspPI GGATC 1 cut(s) 50
BspQI GCTCTTC 2 cut(s) 309, 773
BspT107I GGYRCC 1 cut(s) 379
BsrDI GCAATG 1 cut(s) 51
BsrI ACTGG 4 cut(s) 131, 345, 576, 802
BssECI CCNNGG 1 cut(s) 701
BssMI GATC 1 cut(s) 42
BssNAI GTATAC 1 cut(s) 692
BssSI CACGAG 1 cut(s) 641
Bst1107I GTATAC 1 cut(s) 692
Bst2BI CACGAG 1 cut(s) 641
Bst2UI CCWGG 1 cut(s) 446
Bst6I CTCTTC 4 cut(s) 242, 309, 615, 773
BstAPI GCANNNNNTGC 1 cut(s) 763
BstBAI YACGTR 1 cut(s) 475
BstC8I GCNNGC 1 cut(s) 216
BstDEI CTNAG 1 cut(s) 745
BstF5I GGATG 4 cut(s) 10, 150, 312, 676
BstFNI CGCG 1 cut(s) 790
BstHHI GCGC 1 cut(s) 790
BstKTI GATC 1 cut(s) 45
BstMBI GATC 1 cut(s) 42
BstMWI GCNNNNNNNGC 3 cut(s) 401, 410, 763
BstNI CCWGG 1 cut(s) 446
BstSCI CCNGG 1 cut(s) 444
BstSNI TACGTA 1 cut(s) 475
BstUI CGCG 1 cut(s) 790
BstV1I GCAGC 2 cut(s) 95, 867
BstV2I GAAGAC 2 cut(s) 127, 214
BstXI CCANNNNNNTGG 1 cut(s) 452
BstZ17I GTATAC 1 cut(s) 692
BsuRI GGCC 3 cut(s) 255, 413, 700
BtgZI GCGATG 1 cut(s) 652
BtsCI GGATG 4 cut(s) 10, 150, 312, 676
BtsIMutI CAGTG 1 cut(s) 795
Cac8I GCNNGC 1 cut(s) 216
CfoI GCGC 1 cut(s) 790
Cfr13I GGNCC 2 cut(s) 254, 698
CseI GACGC 1 cut(s) 779
Csp6I GTAC 1 cut(s) 495
CviAII CATG 4 cut(s) 106, 532, 754, 758
CviQI GTAC 1 cut(s) 495
DdeI CTNAG 1 cut(s) 745
DpnI GATC 1 cut(s) 44
DpnII GATC 1 cut(s) 42
Eam1104I CTCTTC 4 cut(s) 242, 309, 615, 773
EarI CTCTTC 4 cut(s) 242, 309, 615, 773
Eco105I TACGTA 1 cut(s) 475
Eco147I AGGCCT 1 cut(s) 413
Eco24I GRGCYC 1 cut(s) 556
Eco88I CYCGRG 1 cut(s) 549
EcoRII CCWGG 1 cut(s) 444
EcoT22I ATGCAT 1 cut(s) 759
EcoT38I GRGCYC 1 cut(s) 556
FaeI CATG 4 cut(s) 109, 535, 757, 761
FaqI GGGAC 1 cut(s) 777
FatI CATG 4 cut(s) 105, 531, 753, 757
FblI GTMKAC 1 cut(s) 691
Fnu4HI GCNGC 2 cut(s) 84, 881
FokI GGATG 4 cut(s) 17, 137, 299, 663
FriOI GRGCYC 1 cut(s) 556
Fsp4HI GCNGC 2 cut(s) 84, 881
FspBI CTAG 2 cut(s) 206, 895
GlaI GCGC 1 cut(s) 789
GluI GCNGC 2 cut(s) 84, 881
GsuI CTGGAG 1 cut(s) 593
HaeIII GGCC 3 cut(s) 255, 413, 700
HapII CCGG 1 cut(s) 252
HgaI GACGC 1 cut(s) 779
HhaI GCGC 1 cut(s) 790
Hin1II CATG 4 cut(s) 109, 535, 757, 761
Hin6I GCGC 1 cut(s) 788
HinP1I GCGC 1 cut(s) 788
HinfI GANTC 4 cut(s) 90, 248, 461, 575
HpaII CCGG 1 cut(s) 252
HphI GGTGA 4 cut(s) 23, 853, 868, 881
Hpy166II GTNNAC 3 cut(s) 495, 692, 713
Hpy188III TCNNGA 1 cut(s) 614
Hpy8I GTNNAC 3 cut(s) 495, 692, 713
HpyAV CCTTC 3 cut(s) 164, 201, 856
HpyCH4IV ACGT 1 cut(s) 474
HpyCH4V TGCA 5 cut(s) 8, 56, 351, 661, 757
HpyF10VI GCNNNNNNNGC 3 cut(s) 401, 410, 763
HpyF3I CTNAG 1 cut(s) 745
HpySE526I ACGT 1 cut(s) 474
Hsp92II CATG 4 cut(s) 109, 535, 757, 761
HspAI GCGC 1 cut(s) 788
Kzo9I GATC 1 cut(s) 42
LguI GCTCTTC 2 cut(s) 309, 773
Lsp1109I GCAGC 2 cut(s) 95, 867
LweI GCATC 1 cut(s) 65
MaeI CTAG 2 cut(s) 206, 895
MaeII ACGT 1 cut(s) 474
MaeIII GTNAC 4 cut(s) 11, 576, 646, 778
MalI GATC 1 cut(s) 44
MboI GATC 1 cut(s) 42
MboII GAAGA 9 cut(s) 127, 214, 229, 296, 299, 602, 721, 760, 871
MhlI GDGCHC 2 cut(s) 556, 768
MluCI AATT 1 cut(s) 174
MlyI GAGTC 2 cut(s) 242, 584
MmeI TCCRAC 1 cut(s) 546
Mph1103I ATGCAT 1 cut(s) 759
MroXI GAANNNNTTC 1 cut(s) 460
MseI TTAA 2 cut(s) 162, 369
MslI CAYNNNNRTG 1 cut(s) 61
MspI CCGG 1 cut(s) 252
MspR9I CCNGG 1 cut(s) 446
MvaI CCWGG 1 cut(s) 446
MvnI CGCG 1 cut(s) 790
MwoI GCNNNNNNNGC 3 cut(s) 401, 410, 763
NdeII GATC 1 cut(s) 42
NlaIII CATG 4 cut(s) 109, 535, 757, 761
NlaIV GGNNCC 2 cut(s) 381, 638
NmuCI GTSAC 3 cut(s) 11, 576, 646
NsiI ATGCAT 1 cut(s) 759
PaeR7I CTCGAG 1 cut(s) 549
PceI AGGCCT 1 cut(s) 413
PciSI GCTCTTC 2 cut(s) 309, 773
PcsI WCGNNNNNNNCGW 1 cut(s) 269
PdmI GAANNNNTTC 1 cut(s) 460
PfeI GAWTC 2 cut(s) 90, 461
PkrI GCNGC 2 cut(s) 85, 882
PleI GAGTC 2 cut(s) 242, 583
PpsI GAGTC 2 cut(s) 242, 583
Ppu21I YACGTR 1 cut(s) 475
Psp6I CCWGG 1 cut(s) 444
PspGI CCWGG 1 cut(s) 444
PspN4I GGNNCC 2 cut(s) 381, 638
PspPI GGNCC 2 cut(s) 254, 698
PspXI VCTCGAGB 1 cut(s) 549
RsaI GTAC 1 cut(s) 496
RsaNI GTAC 1 cut(s) 495
RseI CAYNNNNRTG 1 cut(s) 61
SapI GCTCTTC 2 cut(s) 309, 773
SaqAI TTAA 2 cut(s) 162, 369
SatI GCNGC 2 cut(s) 84, 881
Sau3AI GATC 1 cut(s) 42
Sau96I GGNCC 2 cut(s) 254, 698
SchI GAGTC 2 cut(s) 242, 584
ScrFI CCNGG 1 cut(s) 446
SduI GDGCHC 2 cut(s) 556, 768
SfaNI GCATC 1 cut(s) 65
Sfr274I CTCGAG 1 cut(s) 549
SlaI CTCGAG 1 cut(s) 549
SmiMI CAYNNNNRTG 1 cut(s) 61
SmlI CTYRAG 1 cut(s) 549
SmoI CTYRAG 1 cut(s) 549
SnaBI TACGTA 1 cut(s) 475
Sse9I AATT 1 cut(s) 174
SseBI AGGCCT 1 cut(s) 413
SsiI CCGC 1 cut(s) 883
SspMI CTAG 2 cut(s) 206, 895
StuI AGGCCT 1 cut(s) 413
StyD4I CCNGG 1 cut(s) 444
TaiI ACGT 1 cut(s) 477
TaqI TCGA 1 cut(s) 550
TasI AATT 1 cut(s) 174
TfiI GAWTC 2 cut(s) 90, 461
Tru1I TTAA 2 cut(s) 162, 369
Tru9I TTAA 2 cut(s) 162, 369
TscAI CASTG 1 cut(s) 802
TseFI GTSAC 3 cut(s) 11, 576, 646
TseI GCWGC 2 cut(s) 83, 880
Tsp45I GTSAC 3 cut(s) 11, 576, 646
TspDTI ATGAA 4 cut(s) 106, 167, 280, 742
TspRI CASTG 1 cut(s) 802
XhoI CTCGAG 1 cut(s) 549
XmiI GTMKAC 1 cut(s) 691
XmnI GAANNNNTTC 1 cut(s) 460
XspI CTAG 2 cut(s) 206, 895
Zsp2I ATGCAT 1 cut(s) 759
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.