Rorug02G0243100

Long-chain-alcohol

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000676
Physical Location & Seq
Forward (+)
25093019 .. 25096904
3886 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0243100.1

Sequence Viewer

Length: 828 bp
ATGCCCATTTCTCGCTTCTGTTTCTTTTCCTTCAAACACCGCTCAAAGGAGGCTTTAAATCTACTCAGGAGGTCTGCCCCATCCAAGACAATTCAGTCTCGAAATTATGCAAATTCATCGAAACGTGCTAGTAGGAGAACAGATATCAGTACTTCAACACCAGTAGATACACCACCTTCTCGCTCTCGGGGTTCTTTCGTCCTTCCGGCTGCTACTCTACTAGGATTTGCTGGGTTGGCAGCTTTCATTCATTATAATGATGAGAGGAGAGTAGTAACAAAAGGCCAGGATAACTGCTCGTGTGTAAATAATCTCAAGGGACCTATAATTGGTGGTCCATTTACTTTAGAGGACACAGAGAATCGTACCGTTACTGAGAAAAATCTTCGAGGCAACTGGGCGGTACTCTATTTTGGATATACTTCCTCTCCTGATGTTGGACCAGAGCAAGTCCAGATTATGGCCAAGGCCATAAACATTCTAGAATCAAGACATAATCTCAAAGTTCTACCAGTATTTGTTACAATTGATCCACAACGTGATACCCCTTCTCAACTGCGTGCCTACCTTAAAGAGTTTGAATCAAACATTCTAGGGCTAACAGGACCTGTAACAGCTATAAGACAGATGGCTCAGGAATATCGTGTTTTTTTCAGAAAGATTGAAGAAGATGGGGATGATTATCTCGTTGAGTCTTCCCACAACATGTATTTGATGAGTCCAAACATGGAAGTTGTGAGATGCTTTGGTGTAGAGTACAATGCAGAGGAACTGTCAGAAGCGATACTAAAGGAGCTCAAGTCAAGAGAACCTCAACTTAAGGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MBOAT_2

Protein Analysis

275

Amino Acids

31.09

Weight (kDa)

8.82

Isoelectric Point (pI)

66.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SCO1-SenC PF02630 111 - 244 2.9e-41 SCO1/SenC
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 255
AasI GACNNNNNNGTC 1 cut(s) 94
AccB7I CCANNNNNTGG 1 cut(s) 460
AccBSI CCGCTC 1 cut(s) 42
AciI CCGC 2 cut(s) 40, 401
AclWI GGATC 1 cut(s) 524
AcoI YGGCCR 1 cut(s) 462
AcsI RAATTY 1 cut(s) 112
AdeI CACNNNGTG 1 cut(s) 539
AfaI GTAC 4 cut(s) 151, 367, 405, 758
AfiI CCNNNNNNNGG 4 cut(s) 46, 329, 437, 460
AflII CTTAAG 1 cut(s) 818
AflIII ACRYGT 1 cut(s) 705
AgsI TTSAA 4 cut(s) 34, 156, 581, 665
AjnI CCWGG 1 cut(s) 285
AluBI AGCT 3 cut(s) 242, 617, 796
AluI AGCT 3 cut(s) 242, 617, 796
Alw21I GWGCWC 1 cut(s) 798
Alw26I GTCTC 1 cut(s) 102
AlwI GGATC 1 cut(s) 524
AlwNI CAGNNNCTG 1 cut(s) 608
Ama87I CYCGRG 1 cut(s) 186
AoxI GGCC 3 cut(s) 283, 462, 468
ApeKI GCWGC 2 cut(s) 209, 239
ApoI RAATTY 1 cut(s) 112
AspS9I GGNCC 4 cut(s) 320, 335, 440, 605
AvaI CYCGRG 1 cut(s) 186
AvaII GGWCC 4 cut(s) 320, 335, 440, 605
BalI TGGCCA 1 cut(s) 464
BanII GRGCYC 1 cut(s) 798
BauI CACGAG 1 cut(s) 298
BbsI GAAGAC 1 cut(s) 687
Bbv12I GWGCWC 1 cut(s) 798
BbvI GCAGC 2 cut(s) 196, 251
BccI CCATC 3 cut(s) 88, 622, 665
BcgI CGANNNNNNTGC 2 cut(s) 99, 133
BciT130I CCWGG 1 cut(s) 287
BcoDI GTCTC 1 cut(s) 102
BfaI CTAG 4 cut(s) 129, 221, 482, 593
BfrI CTTAAG 1 cut(s) 818
BisI GCNGC 2 cut(s) 210, 240
BlsI GCNGC 2 cut(s) 211, 241
BmcAI AGTACT 1 cut(s) 151
Bme1390I CCNGG 1 cut(s) 287
Bme18I GGWCC 4 cut(s) 320, 335, 440, 605
BmeT110I CYCGRG 1 cut(s) 186
BmgT120I GGNCC 4 cut(s) 320, 335, 440, 605
BmiI GGNNCC 1 cut(s) 321
BmrFI CCNGG 1 cut(s) 287
BmrI ACTGGG 1 cut(s) 406
BmsI GCATC 1 cut(s) 731
BmuI ACTGGG 1 cut(s) 406
BpiI GAAGAC 1 cut(s) 687
Bpu10I CCTNAGC 1 cut(s) 633
BpuEI CTTGAG 2 cut(s) 299, 782
BsaBI GATNNNNATC 1 cut(s) 681
BsaJI CCNNGG 1 cut(s) 465
BsaXI ACNNNNNCTCC 4 cut(s) 412, 442, 785, 815
Bsc4I CCNNNNNNNGG 4 cut(s) 46, 329, 437, 460
Bse1I ACTGG 3 cut(s) 161, 401, 512
Bse8I GATNNNNATC 1 cut(s) 681
BseBI CCWGG 1 cut(s) 287
BseDI CCNNGG 1 cut(s) 465
BseGI GGATG 2 cut(s) 80, 682
BseJI GATNNNNATC 1 cut(s) 681
BseLI CCNNNNNNNGG 4 cut(s) 46, 329, 437, 460
BseMII CTCAG 3 cut(s) 79, 366, 647
BseNI ACTGG 3 cut(s) 161, 401, 512
BseRI GAGGAG 1 cut(s) 280
BseXI GCAGC 2 cut(s) 196, 251
BseYI CCCAGC 1 cut(s) 230
BshFI GGCC 3 cut(s) 285, 464, 470
BsiHKAI GWGCWC 1 cut(s) 798
BsiHKCI CYCGRG 1 cut(s) 186
BsiSI CCGG 1 cut(s) 206
BslFI GGGAC 1 cut(s) 333
BslI CCNNNNNNNGG 4 cut(s) 46, 329, 437, 460
BsmAI GTCTC 1 cut(s) 102
BsmFI GGGAC 1 cut(s) 333
BsnI GGCC 3 cut(s) 285, 464, 470
BsoBI CYCGRG 1 cut(s) 186
Bsp1286I GDGCHC 1 cut(s) 798
Bsp143I GATC 1 cut(s) 529
BspACI CCGC 2 cut(s) 40, 401
BspANI GGCC 3 cut(s) 285, 464, 470
BspCNI CTCAG 3 cut(s) 78, 367, 646
BspLI GGNNCC 1 cut(s) 321
BspPI GGATC 1 cut(s) 524
BspTI CTTAAG 1 cut(s) 818
BsrBI CCGCTC 1 cut(s) 42
BsrI ACTGG 3 cut(s) 161, 401, 512
BssECI CCNNGG 1 cut(s) 465
BssMI GATC 1 cut(s) 529
BssSI CACGAG 1 cut(s) 298
BssT1I CCWWGG 1 cut(s) 465
Bst2BI CACGAG 1 cut(s) 298
Bst2UI CCWGG 1 cut(s) 287
Bst4CI ACNGT 2 cut(s) 370, 774
BstAFI CTTAAG 1 cut(s) 818
BstC8I GCNNGC 1 cut(s) 561
BstDEI CTNAG 3 cut(s) 65, 375, 633
BstF5I GGATG 2 cut(s) 80, 682
BstKTI GATC 1 cut(s) 532
BstMAI GTCTC 1 cut(s) 102
BstMBI GATC 1 cut(s) 529
BstMWI GCNNNNNNNGC 1 cut(s) 236
BstNI CCWGG 1 cut(s) 287
BstNSI RCATGY 1 cut(s) 709
BstSCI CCNGG 1 cut(s) 285
BstV1I GCAGC 2 cut(s) 196, 251
BstV2I GAAGAC 1 cut(s) 687
BsuRI GGCC 3 cut(s) 285, 464, 470
BtsCI GGATG 2 cut(s) 80, 682
Cac8I GCNNGC 1 cut(s) 561
CaiI CAGNNNCTG 1 cut(s) 608
Cfr13I GGNCC 4 cut(s) 320, 335, 440, 605
Csp6I GTAC 4 cut(s) 150, 366, 404, 757
CviAII CATG 2 cut(s) 706, 727
CviQI GTAC 4 cut(s) 150, 366, 404, 757
DdeI CTNAG 3 cut(s) 65, 375, 633
DpnI GATC 1 cut(s) 531
DpnII GATC 1 cut(s) 529
DraI TTTAAA 1 cut(s) 57
DraIII CACNNNGTG 1 cut(s) 539
DrdI GACNNNNNNGTC 1 cut(s) 94
DseDI GACNNNNNNGTC 1 cut(s) 94
EaeI YGGCCR 1 cut(s) 462
Ecl136II GAGCTC 1 cut(s) 796
Eco130I CCWWGG 1 cut(s) 465
Eco24I GRGCYC 1 cut(s) 798
Eco32I GATATC 1 cut(s) 145
Eco47I GGWCC 4 cut(s) 320, 335, 440, 605
Eco53kI GAGCTC 1 cut(s) 796
Eco88I CYCGRG 1 cut(s) 186
EcoICRI GAGCTC 1 cut(s) 796
EcoO109I RGGNCCY 2 cut(s) 320, 605
EcoRII CCWGG 1 cut(s) 285
EcoRV GATATC 1 cut(s) 145
EcoT14I CCWWGG 1 cut(s) 465
EcoT38I GRGCYC 1 cut(s) 798
ErhI CCWWGG 1 cut(s) 465
FaeI CATG 2 cut(s) 709, 730
FaqI GGGAC 1 cut(s) 333
FatI CATG 2 cut(s) 705, 726
Fnu4HI GCNGC 2 cut(s) 210, 240
FokI GGATG 2 cut(s) 67, 689
FriOI GRGCYC 1 cut(s) 798
Fsp4HI GCNGC 2 cut(s) 210, 240
FspBI CTAG 4 cut(s) 129, 221, 482, 593
GluI GCNGC 2 cut(s) 210, 240
GsaI CCCAGC 1 cut(s) 234
HaeIII GGCC 3 cut(s) 285, 464, 470
HapII CCGG 1 cut(s) 206
Hin1II CATG 2 cut(s) 709, 730
HinfI GANTC 5 cut(s) 361, 485, 581, 692, 718
HpaII CCGG 1 cut(s) 206
Hpy188I TCNGA 2 cut(s) 656, 778
Hpy188III TCNNGA 8 cut(s) 67, 99, 431, 454, 482, 489, 635, 804
HpyAV CCTTC 4 cut(s) 40, 186, 212, 558
HpyCH4III ACNGT 2 cut(s) 370, 774
HpyCH4IV ACGT 2 cut(s) 124, 538
HpyCH4V TGCA 2 cut(s) 110, 764
HpyF10VI GCNNNNNNNGC 1 cut(s) 236
HpyF3I CTNAG 3 cut(s) 65, 375, 633
HpySE526I ACGT 2 cut(s) 124, 538
Hsp92II CATG 2 cut(s) 709, 730
Kzo9I GATC 1 cut(s) 529
LmnI GCTCC 1 cut(s) 793
Lsp1109I GCAGC 2 cut(s) 196, 251
LweI GCATC 1 cut(s) 731
MaeI CTAG 4 cut(s) 129, 221, 482, 593
MaeII ACGT 2 cut(s) 124, 538
MaeIII GTNAC 4 cut(s) 274, 370, 520, 610
MalI GATC 1 cut(s) 531
MbiI CCGCTC 1 cut(s) 42
MboI GATC 1 cut(s) 529
MboII GAAGA 4 cut(s) 377, 677, 680, 687
MfeI CAATTG 1 cut(s) 525
MhlI GDGCHC 1 cut(s) 798
MlsI TGGCCA 1 cut(s) 464
MluCI AATT 5 cut(s) 90, 103, 112, 327, 525
MluNI TGGCCA 1 cut(s) 464
MlyI GAGTC 2 cut(s) 701, 727
MmeI TCCRAC 1 cut(s) 418
MnlI CCTC 8 cut(s) 43, 63, 258, 343, 383, 436, 760, 822
Mox20I TGGCCA 1 cut(s) 464
MscI TGGCCA 1 cut(s) 464
MseI TTAA 3 cut(s) 56, 570, 819
MslI CAYNNNNRTG 1 cut(s) 255
Msp20I TGGCCA 1 cut(s) 464
MspCI CTTAAG 1 cut(s) 818
MspI CCGG 1 cut(s) 206
MspR9I CCNGG 1 cut(s) 287
MunI CAATTG 1 cut(s) 525
MvaI CCWGG 1 cut(s) 287
MwoI GCNNNNNNNGC 1 cut(s) 236
NdeII GATC 1 cut(s) 529
NlaIII CATG 2 cut(s) 709, 730
NlaIV GGNNCC 1 cut(s) 321
NspI RCATGY 1 cut(s) 709
PciI ACATGT 1 cut(s) 705
PfeI GAWTC 3 cut(s) 361, 485, 581
PflMI CCANNNNNTGG 1 cut(s) 460
PkrI GCNGC 2 cut(s) 211, 241
PleI GAGTC 2 cut(s) 700, 726
PpsI GAGTC 2 cut(s) 700, 726
PpuMI RGGWCCY 2 cut(s) 320, 605
PscI ACATGT 1 cut(s) 705
PsiI TTATAA 1 cut(s) 255
Psp124BI GAGCTC 1 cut(s) 798
Psp5II RGGWCCY 2 cut(s) 320, 605
Psp6I CCWGG 1 cut(s) 285
PspFI CCCAGC 1 cut(s) 230
PspGI CCWGG 1 cut(s) 285
PspN4I GGNNCC 1 cut(s) 321
PspPI GGNCC 4 cut(s) 320, 335, 440, 605
PspPPI RGGWCCY 2 cut(s) 320, 605
PstNI CAGNNNCTG 1 cut(s) 608
RsaI GTAC 4 cut(s) 151, 367, 405, 758
RsaNI GTAC 4 cut(s) 150, 366, 404, 757
RseI CAYNNNNRTG 1 cut(s) 255
SacI GAGCTC 1 cut(s) 798
SaqAI TTAA 3 cut(s) 56, 570, 819
SatI GCNGC 2 cut(s) 210, 240
Sau3AI GATC 1 cut(s) 529
Sau96I GGNCC 4 cut(s) 320, 335, 440, 605
ScaI AGTACT 1 cut(s) 151
SchI GAGTC 2 cut(s) 701, 727
ScrFI CCNGG 1 cut(s) 287
SduI GDGCHC 1 cut(s) 798
SfaNI GCATC 1 cut(s) 731
SinI GGWCC 4 cut(s) 320, 335, 440, 605
SmiMI CAYNNNNRTG 1 cut(s) 255
SmlI CTYRAG 3 cut(s) 314, 797, 818
SmoI CTYRAG 3 cut(s) 314, 797, 818
Sse9I AATT 5 cut(s) 90, 103, 112, 327, 525
SsiI CCGC 2 cut(s) 40, 401
SspMI CTAG 4 cut(s) 129, 221, 482, 593
SstI GAGCTC 1 cut(s) 798
StyD4I CCNGG 1 cut(s) 285
StyI CCWWGG 1 cut(s) 465
TaaI ACNGT 2 cut(s) 370, 774
TaiI ACGT 2 cut(s) 127, 541
TaqI TCGA 3 cut(s) 100, 119, 388
TasI AATT 5 cut(s) 90, 103, 112, 327, 525
TatI WGTACW 2 cut(s) 149, 756
TfiI GAWTC 3 cut(s) 361, 485, 581
Tru1I TTAA 3 cut(s) 56, 570, 819
Tru9I TTAA 3 cut(s) 56, 570, 819
TseI GCWGC 2 cut(s) 209, 239
TspDTI ATGAA 3 cut(s) 105, 235, 239
Van91I CCANNNNNTGG 1 cut(s) 460
Vha464I CTTAAG 1 cut(s) 818
VpaK11BI GGWCC 4 cut(s) 320, 335, 440, 605
XapI RAATTY 1 cut(s) 112
XbaI TCTAGA 1 cut(s) 481
XceI RCATGY 1 cut(s) 709
XspI CTAG 4 cut(s) 129, 221, 482, 593
ZrmI AGTACT 1 cut(s) 151
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.