Rmu_sc0009589.1_g000002

Long-chain-alcohol

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009589.1
OG0000676
Physical Location & Seq
Reverse (-)
10299 .. 13995
3697 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009589.1_g000002.1.cds

Sequence Viewer

Length: 747 bp
atggaggatgagctcaagaacttcatcaagattaatcccaaagggtctgctcaggctcatctctctcctcccagccttctacctcttcatcactaccccctagctctccattccttccatctctgtggacccacaatcgtcttcctagtctggcttggcatctccaggctccttctcttttcctttaaccttggccctctatcaccacccccaccttcactcttccatttcatctccatagcttgcctccccatcaaaatcaaacaagactcacctagaaaaacacccccccccaatcccaaaaccacccaaaatcccataaagccaattggtcaaagtgtcacaaatgagctgccaattgtggtagctgtgaaggcattgcttttggctgcagtccaacaagccttatctctcaacttcgcttcaagacttttggggccgtcgatggaatctaatggtcacaaatatcctgaggccaacgccgcgcgttctcctctctcccccgacctctttctcgtcctctcttccatcaccggaaaattccaactccggccactatctcgcaaaaccgccaccacccatcaattcctgaatttgacccaaacccaagagaaattgaaaccatgcatcaacctctccctttctcgtcttcccactgccagcgacggaaaaacaccatctccggccactaccacacaacaccagctccaccaatcgatccagagtacaaatccgaccaaagcctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MBOAT_2

Protein Analysis

248

Amino Acids

27.03

Weight (kDa)

10.02

Isoelectric Point (pI)

44.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 485, 487
AciI CCGC 2 cut(s) 483, 570
AclWI GGATC 1 cut(s) 712
AcoI YGGCCR 2 cut(s) 551, 684
AcsI RAATTY 2 cut(s) 539, 592
AfaI GTAC 1 cut(s) 727
AgsI TTSAA 2 cut(s) 426, 619
AjnI CCWGG 1 cut(s) 164
AluBI AGCT 6 cut(s) 13, 104, 242, 352, 368, 706
AluI AGCT 6 cut(s) 13, 104, 242, 352, 368, 706
Alw21I GWGCWC 1 cut(s) 15
AlwI GGATC 1 cut(s) 712
AoxI GGCC 5 cut(s) 193, 437, 474, 551, 684
ApeKI GCWGC 2 cut(s) 352, 389
ApoI RAATTY 2 cut(s) 539, 592
AseI ATTAAT 1 cut(s) 33
AspLEI GCGC 1 cut(s) 487
AspS9I GGNCC 3 cut(s) 128, 194, 437
AsuHPI GGTGA 3 cut(s) 195, 264, 523
AvaII GGWCC 1 cut(s) 128
AxyI CCTNAGG 1 cut(s) 471
BanII GRGCYC 1 cut(s) 15
BbsI GAAGAC 2 cut(s) 133, 641
Bbv12I GWGCWC 1 cut(s) 15
BbvI GCAGC 2 cut(s) 339, 376
BccI CCATC 6 cut(s) 126, 260, 439, 536, 588, 685
BceAI ACGGC 1 cut(s) 424
BciT130I CCWGG 1 cut(s) 166
BfaI CTAG 3 cut(s) 101, 146, 276
BfmI CTRYAG 1 cut(s) 390
BisI GCNGC 3 cut(s) 353, 390, 483
BlsI GCNGC 3 cut(s) 354, 391, 484
Bme1390I CCNGG 1 cut(s) 166
Bme18I GGWCC 1 cut(s) 128
BmgT120I GGNCC 3 cut(s) 128, 194, 437
BmiI GGNNCC 3 cut(s) 130, 170, 438
BmrFI CCNGG 1 cut(s) 166
BmsI GCATC 2 cut(s) 168, 636
BpiI GAAGAC 2 cut(s) 133, 641
BpmI CTGGAG 1 cut(s) 148
Bpu10I CCTNAGC 1 cut(s) 51
Bsa29I ATCGAT 1 cut(s) 716
BsaJI CCNNGG 1 cut(s) 190
BsaWI WCCGGW 1 cut(s) 533
BsaXI ACNNNNNCTCC 4 cut(s) 664, 690, 694, 720
Bse21I CCTNAGG 1 cut(s) 471
Bse3DI GCAATG 1 cut(s) 377
BseBI CCWGG 1 cut(s) 166
BseCI ATCGAT 1 cut(s) 716
BseDI CCNNGG 1 cut(s) 190
BseGI GGATG 1 cut(s) 13
BseMI GCAATG 1 cut(s) 377
BseMII CTCAG 2 cut(s) 65, 462
BseRI GAGGAG 2 cut(s) 57, 483
BseXI GCAGC 2 cut(s) 339, 376
BseYI CCCAGC 1 cut(s) 71
Bsh1236I CGCG 2 cut(s) 485, 487
BshFI GGCC 5 cut(s) 195, 439, 476, 553, 686
BshVI ATCGAT 1 cut(s) 716
BsiHKAI GWGCWC 1 cut(s) 15
BsiSI CCGG 3 cut(s) 534, 550, 683
BsnI GGCC 5 cut(s) 195, 439, 476, 553, 686
Bsp1286I GDGCHC 1 cut(s) 15
Bsp143I GATC 1 cut(s) 717
BspACI CCGC 2 cut(s) 483, 570
BspANI GGCC 5 cut(s) 195, 439, 476, 553, 686
BspCNI CTCAG 2 cut(s) 64, 463
BspDI ATCGAT 1 cut(s) 716
BspFNI CGCG 2 cut(s) 485, 487
BspLI GGNNCC 3 cut(s) 130, 170, 438
BspMAI CTGCAG 1 cut(s) 394
BspPI GGATC 1 cut(s) 712
BsrDI GCAATG 1 cut(s) 377
BssECI CCNNGG 1 cut(s) 190
BssMI GATC 1 cut(s) 717
BssT1I CCWWGG 1 cut(s) 190
Bst2UI CCWGG 1 cut(s) 166
Bst6I CTCTTC 3 cut(s) 90, 227, 529
BstC8I GCNNGC 2 cut(s) 244, 661
BstDEI CTNAG 2 cut(s) 51, 471
BstF5I GGATG 1 cut(s) 13
BstFNI CGCG 2 cut(s) 485, 487
BstHHI GCGC 1 cut(s) 487
BstKTI GATC 1 cut(s) 720
BstMBI GATC 1 cut(s) 717
BstMWI GCNNNNNNNGC 2 cut(s) 374, 482
BstNI CCWGG 1 cut(s) 166
BstSCI CCNGG 1 cut(s) 164
BstSFI CTRYAG 1 cut(s) 390
BstUI CGCG 2 cut(s) 485, 487
BstV1I GCAGC 2 cut(s) 339, 376
BstV2I GAAGAC 2 cut(s) 133, 641
BstXI CCANNNNNNTGG 1 cut(s) 125
Bsu15I ATCGAT 1 cut(s) 716
Bsu36I CCTNAGG 1 cut(s) 471
BsuRI GGCC 5 cut(s) 195, 439, 476, 553, 686
BsuTUI ATCGAT 1 cut(s) 716
BtsCI GGATG 1 cut(s) 13
BtsI GCAGTG 1 cut(s) 654
BtsIMutI CAGTG 1 cut(s) 654
Cac8I GCNNGC 2 cut(s) 244, 661
CfoI GCGC 1 cut(s) 487
Cfr13I GGNCC 3 cut(s) 128, 194, 437
ClaI ATCGAT 1 cut(s) 716
Csp6I GTAC 1 cut(s) 726
CviAII CATG 1 cut(s) 624
CviQI GTAC 1 cut(s) 726
DdeI CTNAG 2 cut(s) 51, 471
DpnI GATC 1 cut(s) 719
DpnII GATC 1 cut(s) 717
EaeI YGGCCR 2 cut(s) 551, 684
Eam1104I CTCTTC 3 cut(s) 90, 227, 529
EarI CTCTTC 3 cut(s) 90, 227, 529
Ecl136II GAGCTC 1 cut(s) 13
Eco130I CCWWGG 1 cut(s) 190
Eco24I GRGCYC 1 cut(s) 15
Eco47I GGWCC 1 cut(s) 128
Eco53kI GAGCTC 1 cut(s) 13
Eco81I CCTNAGG 1 cut(s) 471
EcoICRI GAGCTC 1 cut(s) 13
EcoRII CCWGG 1 cut(s) 164
EcoT14I CCWWGG 1 cut(s) 190
EcoT22I ATGCAT 1 cut(s) 629
EcoT38I GRGCYC 1 cut(s) 15
ErhI CCWWGG 1 cut(s) 190
FaeI CATG 1 cut(s) 627
FaiI YATR 3 cut(s) 239, 320, 625
FatI CATG 1 cut(s) 623
Fnu4HI GCNGC 3 cut(s) 353, 390, 483
FokI GGATG 1 cut(s) 20
FriOI GRGCYC 1 cut(s) 15
Fsp4HI GCNGC 3 cut(s) 353, 390, 483
FspBI CTAG 3 cut(s) 101, 146, 276
GlaI GCGC 1 cut(s) 486
GluI GCNGC 3 cut(s) 353, 390, 483
GsaI CCCAGC 1 cut(s) 75
GsuI CTGGAG 1 cut(s) 148
HaeIII GGCC 5 cut(s) 195, 439, 476, 553, 686
HapII CCGG 3 cut(s) 534, 550, 683
HhaI GCGC 1 cut(s) 487
Hin1II CATG 1 cut(s) 627
Hin6I GCGC 1 cut(s) 485
HinP1I GCGC 1 cut(s) 485
HinfI GANTC 2 cut(s) 269, 449
HpaII CCGG 3 cut(s) 534, 550, 683
HphI GGTGA 3 cut(s) 195, 264, 523
Hpy166II GTNNAC 1 cut(s) 128
Hpy188I TCNGA 1 cut(s) 735
Hpy188III TCNNGA 6 cut(s) 16, 28, 426, 470, 589, 721
Hpy8I GTNNAC 1 cut(s) 128
Hpy99I CGWCG 2 cut(s) 445, 668
HpyAV CCTTC 5 cut(s) 86, 124, 182, 225, 367
HpyCH4V TGCA 2 cut(s) 392, 627
HpyF10VI GCNNNNNNNGC 2 cut(s) 374, 482
HpyF3I CTNAG 2 cut(s) 51, 471
Hsp92II CATG 1 cut(s) 627
HspAI GCGC 1 cut(s) 485
Kzo9I GATC 1 cut(s) 717
LmnI GCTCC 2 cut(s) 174, 711
Lsp1109I GCAGC 2 cut(s) 339, 376
LweI GCATC 2 cut(s) 168, 636
MaeI CTAG 3 cut(s) 101, 146, 276
MaeIII GTNAC 2 cut(s) 340, 458
MalI GATC 1 cut(s) 719
MboI GATC 1 cut(s) 717
MboII GAAGA 5 cut(s) 77, 133, 214, 516, 641
MfeI CAATTG 2 cut(s) 327, 357
MhlI GDGCHC 1 cut(s) 15
MluCI AATT 6 cut(s) 327, 357, 539, 584, 592, 614
MlyI GAGTC 1 cut(s) 263
MmeI TCCRAC 2 cut(s) 421, 568
MnlI CCTC 9 cut(s) 78, 93, 207, 257, 466, 504, 518, 530, 644
Mph1103I ATGCAT 1 cut(s) 629
MseI TTAA 2 cut(s) 33, 186
MslI CAYNNNNRTG 1 cut(s) 123
MspI CCGG 3 cut(s) 534, 550, 683
MspR9I CCNGG 1 cut(s) 166
MunI CAATTG 2 cut(s) 327, 357
MvaI CCWGG 1 cut(s) 166
MvnI CGCG 2 cut(s) 485, 487
MwoI GCNNNNNNNGC 2 cut(s) 374, 482
NdeII GATC 1 cut(s) 717
NlaIII CATG 1 cut(s) 627
NlaIV GGNNCC 3 cut(s) 130, 170, 438
NmuCI GTSAC 2 cut(s) 340, 458
NsiI ATGCAT 1 cut(s) 629
PfeI GAWTC 1 cut(s) 449
PkrI GCNGC 3 cut(s) 354, 391, 484
PleI GAGTC 1 cut(s) 263
PpsI GAGTC 1 cut(s) 263
PshBI ATTAAT 1 cut(s) 33
Psp124BI GAGCTC 1 cut(s) 15
Psp6I CCWGG 1 cut(s) 164
PspFI CCCAGC 1 cut(s) 71
PspGI CCWGG 1 cut(s) 164
PspN4I GGNNCC 3 cut(s) 130, 170, 438
PspPI GGNCC 3 cut(s) 128, 194, 437
PstI CTGCAG 1 cut(s) 394
RsaI GTAC 1 cut(s) 727
RsaNI GTAC 1 cut(s) 726
RseI CAYNNNNRTG 1 cut(s) 123
SacI GAGCTC 1 cut(s) 15
SaqAI TTAA 2 cut(s) 33, 186
SatI GCNGC 3 cut(s) 353, 390, 483
Sau3AI GATC 1 cut(s) 717
Sau96I GGNCC 3 cut(s) 128, 194, 437
SchI GAGTC 1 cut(s) 263
ScrFI CCNGG 1 cut(s) 166
SduI GDGCHC 1 cut(s) 15
SfaNI GCATC 2 cut(s) 168, 636
SfcI CTRYAG 1 cut(s) 390
SinI GGWCC 1 cut(s) 128
SmiMI CAYNNNNRTG 1 cut(s) 123
SmlI CTYRAG 1 cut(s) 14
SmoI CTYRAG 1 cut(s) 14
Sse9I AATT 6 cut(s) 327, 357, 539, 584, 592, 614
SsiI CCGC 2 cut(s) 483, 570
SspMI CTAG 3 cut(s) 101, 146, 276
SstI GAGCTC 1 cut(s) 15
StyD4I CCNGG 1 cut(s) 164
StyI CCWWGG 1 cut(s) 190
TaqI TCGA 2 cut(s) 443, 716
TasI AATT 6 cut(s) 327, 357, 539, 584, 592, 614
TatI WGTACW 1 cut(s) 725
TauI GCSGC 1 cut(s) 485
TfiI GAWTC 1 cut(s) 449
Tru1I TTAA 2 cut(s) 33, 186
Tru9I TTAA 2 cut(s) 33, 186
TscAI CASTG 1 cut(s) 661
TseFI GTSAC 2 cut(s) 340, 458
TseI GCWGC 2 cut(s) 352, 389
Tsp45I GTSAC 2 cut(s) 340, 458
TspDTI ATGAA 3 cut(s) 13, 77, 220
TspGWI ACGGA 1 cut(s) 681
TspRI CASTG 1 cut(s) 661
VpaK11BI GGWCC 1 cut(s) 128
VspI ATTAAT 1 cut(s) 33
XapI RAATTY 2 cut(s) 539, 592
XspI CTAG 3 cut(s) 101, 146, 276
Zsp2I ATGCAT 1 cut(s) 629
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.