Rw3G023820

Long-chain-alcohol

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0000676
Physical Location & Seq
Reverse (-)
30283940 .. 30296674
12735 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G023820.1

Sequence Viewer

Length: 981 bp
ATGGAGGATGAGCTCAAGAACTTGATCAAGGTATGGATCACACCATCTTATGTCTATCCTATATATTGCCATTTCATAGTCTCTAGATTAATCCGAAAGGGCCTGCTCAGGCTCATCTCTCTCCTCCCTGTCTTCTACCTCTTCATCACCGCCCCCCTAGCACTCCATTCCTTCCATCTCTGTGGACCCACAATCGTCTTCCTAATCTGGCTTGGCATCTCCAGGCTTCTCCTCTTCTCCTTTAACCTTGACCCTCTATCACCATCCCAACCTTCACTCTTCCATTTCATCTCCATAGCTTGCCTCCCCATCAAAATCAAACAAGACCTACCTAGAAAAACACCCCCAAATCCAATAGGTCGAAGTGTCACAAAGGAGCTGCCAATTGTTGTAGCTATGAAGGCATTGCTTTTGGGTATGATCATTCATACCTACGAGTACAGACCACATTTGCACCCGTATGTGATCCTAGCCTTGTATTGTTGCCACATGTACTTGGGTCTAGAAATATTCTTTCCCCTTATCGCGACTCCAGCTCGAGCTCCTTATCTCTCAACTTCGCTTCAAGACTTTTGGGGCTGTCGATGGAATCTAATGGTCACAAATATCTTGTGGCCAACAATATACGATCCTACCAGGCGCGTGTGCGGACGTTTAGTTGGGGAACTGTGGGCCATGCTCTTGGCTTTGATGGCCACCTTTGTGGTCTGTGGGTTAATGCACGAGGTTACTTATTACTATCTCACGCGCGTTCTGCCCACATGGGAAGTGACGTGGTTTTTTATGCTACATGGGGCTTGCGTGGCGGTTGAGGCGGAGGTTAAGAAGGCGGTTGCCGATAGGTGGAGGTTGCACCCGGTGGTTTCGGGGTTGTTGACGTGTGTGTTCTTGGCTGTTGGCAATTGGCTGTTCTTTCCTCAGTTGCTCAGGAATGCAATTATGGTGGATTTTGTAAAGGCTAACTTGCCTCATTTGCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MBOAT_2

Protein Analysis

326

Amino Acids

37.55

Weight (kDa)

9.15

Isoelectric Point (pI)

41.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MBOAT_2 PF13813 181 - 262 2.3e-14 Membrane bound O-acyl transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 4 cut(s) 527, 642, 748, 750
AciI CCGC 5 cut(s) 150, 648, 806, 815, 830
AclWI GGATC 3 cut(s) 44, 460, 623
AcoI YGGCCR 2 cut(s) 614, 693
AdeI CACNNNGTG 1 cut(s) 859
AfaI GTAC 2 cut(s) 440, 494
AfiI CCNNNNNNNGG 1 cut(s) 843
AflIII ACRYGT 2 cut(s) 489, 878
AgsI TTSAA 1 cut(s) 566
AjiI CACGTC 2 cut(s) 774, 879
AjnI CCWGG 2 cut(s) 221, 635
AleI CACNNNNGTG 1 cut(s) 701
AluBI AGCT 6 cut(s) 13, 299, 379, 395, 536, 542
AluI AGCT 6 cut(s) 13, 299, 379, 395, 536, 542
Alw21I GWGCWC 2 cut(s) 15, 544
Alw26I GTCTC 1 cut(s) 85
AlwI GGATC 3 cut(s) 44, 460, 623
Ama87I CYCGRG 1 cut(s) 537
AoxI GGCC 4 cut(s) 100, 614, 672, 693
ApeKI GCWGC 1 cut(s) 379
AseI ATTAAT 1 cut(s) 89
AspLEI GCGC 2 cut(s) 642, 750
AspS9I GGNCC 3 cut(s) 100, 185, 672
AsuC2I CCSGG 1 cut(s) 857
AsuHPI GGTGA 2 cut(s) 139, 252
AvaI CYCGRG 1 cut(s) 537
AvaII GGWCC 1 cut(s) 185
BalI TGGCCA 2 cut(s) 616, 695
BanII GRGCYC 2 cut(s) 15, 544
BauI CACGAG 1 cut(s) 722
BbsI GAAGAC 2 cut(s) 124, 190
Bbv12I GWGCWC 2 cut(s) 15, 544
BbvI GCAGC 1 cut(s) 366
BccI CCATC 6 cut(s) 52, 183, 271, 317, 579, 685
BciT130I CCWGG 2 cut(s) 223, 637
BclI TGATCA 2 cut(s) 24, 420
BcnI CCSGG 1 cut(s) 857
BcoDI GTCTC 1 cut(s) 85
BfaI CTAG 5 cut(s) 84, 158, 333, 470, 503
BisI GCNGC 1 cut(s) 380
BlsI GCNGC 1 cut(s) 381
Bme1390I CCNGG 3 cut(s) 223, 637, 857
Bme18I GGWCC 1 cut(s) 185
BmeT110I CYCGRG 1 cut(s) 537
BmgBI CACGTC 2 cut(s) 774, 879
BmgT120I GGNCC 3 cut(s) 100, 185, 672
BmiI GGNNCC 1 cut(s) 187
BmrFI CCNGG 3 cut(s) 223, 637, 857
BmsI GCATC 1 cut(s) 225
BpiI GAAGAC 2 cut(s) 124, 190
BpmI CTGGAG 2 cut(s) 205, 516
Bpu10I CCTNAGC 2 cut(s) 107, 926
BpuMI CCSGG 1 cut(s) 857
Bsc4I CCNNNNNNNGG 1 cut(s) 843
Bse3DI GCAATG 1 cut(s) 404
BseBI CCWGG 2 cut(s) 223, 637
BseGI GGATG 2 cut(s) 13, 263
BseLI CCNNNNNNNGG 1 cut(s) 843
BseMI GCAATG 1 cut(s) 404
BseMII CTCAG 3 cut(s) 121, 932, 940
BseRI GAGGAG 2 cut(s) 113, 221
BseXI GCAGC 1 cut(s) 366
Bsh1236I CGCG 4 cut(s) 527, 642, 748, 750
BshFI GGCC 4 cut(s) 102, 616, 674, 695
BsiHKAI GWGCWC 2 cut(s) 15, 544
BsiHKCI CYCGRG 1 cut(s) 537
BsiSI CCGG 1 cut(s) 857
BslI CCNNNNNNNGG 1 cut(s) 843
BsmAI GTCTC 1 cut(s) 85
BsmI GAATGC 1 cut(s) 937
BsnI GGCC 4 cut(s) 102, 616, 674, 695
BsoBI CYCGRG 1 cut(s) 537
Bsp1286I GDGCHC 2 cut(s) 15, 544
Bsp143I GATC 5 cut(s) 24, 36, 420, 465, 628
Bsp68I TCGCGA 1 cut(s) 527
BspACI CCGC 5 cut(s) 150, 648, 806, 815, 830
BspANI GGCC 4 cut(s) 102, 616, 674, 695
BspCNI CTCAG 3 cut(s) 120, 931, 939
BspFNI CGCG 4 cut(s) 527, 642, 748, 750
BspLI GGNNCC 1 cut(s) 187
BspPI GGATC 3 cut(s) 44, 460, 623
BsrDI GCAATG 1 cut(s) 404
BssMI GATC 5 cut(s) 24, 36, 420, 465, 628
BssSI CACGAG 1 cut(s) 722
Bst2BI CACGAG 1 cut(s) 722
Bst2UI CCWGG 2 cut(s) 223, 637
Bst4CI ACNGT 1 cut(s) 669
Bst6I CTCTTC 3 cut(s) 146, 239, 284
BstC8I GCNNGC 3 cut(s) 104, 301, 799
BstDEI CTNAG 3 cut(s) 107, 918, 926
BstF5I GGATG 2 cut(s) 13, 263
BstFNI CGCG 4 cut(s) 527, 642, 748, 750
BstHHI GCGC 2 cut(s) 642, 750
BstKTI GATC 5 cut(s) 27, 39, 423, 468, 631
BstMAI GTCTC 1 cut(s) 85
BstMBI GATC 5 cut(s) 24, 36, 420, 465, 628
BstMWI GCNNNNNNNGC 8 cut(s) 158, 401, 533, 692, 754, 803, 812, 973
BstNI CCWGG 2 cut(s) 223, 637
BstNSI RCATGY 1 cut(s) 493
BstSCI CCNGG 3 cut(s) 221, 635, 855
BstUI CGCG 4 cut(s) 527, 642, 748, 750
BstV1I GCAGC 1 cut(s) 366
BstV2I GAAGAC 2 cut(s) 124, 190
BstXI CCANNNNNNTGG 3 cut(s) 182, 682, 703
BsuRI GGCC 4 cut(s) 102, 616, 674, 695
BtrI CACGTC 2 cut(s) 774, 879
BtsCI GGATG 2 cut(s) 13, 263
BtuMI TCGCGA 1 cut(s) 527
Cac8I GCNNGC 3 cut(s) 104, 301, 799
CfoI GCGC 2 cut(s) 642, 750
Cfr13I GGNCC 3 cut(s) 100, 185, 672
Csp6I GTAC 2 cut(s) 439, 493
CspCI CAANNNNNGTGG 2 cut(s) 924, 959
CviAII CATG 4 cut(s) 490, 676, 762, 791
CviQI GTAC 2 cut(s) 439, 493
DdeI CTNAG 3 cut(s) 107, 918, 926
DpnI GATC 5 cut(s) 26, 38, 422, 467, 630
DpnII GATC 5 cut(s) 24, 36, 420, 465, 628
DraIII CACNNNGTG 1 cut(s) 859
EaeI YGGCCR 2 cut(s) 614, 693
Eam1104I CTCTTC 3 cut(s) 146, 239, 284
EarI CTCTTC 3 cut(s) 146, 239, 284
EciI GGCGGA 1 cut(s) 830
Ecl136II GAGCTC 2 cut(s) 13, 542
Eco24I GRGCYC 2 cut(s) 15, 544
Eco47I GGWCC 1 cut(s) 185
Eco53kI GAGCTC 2 cut(s) 13, 542
Eco88I CYCGRG 1 cut(s) 537
EcoICRI GAGCTC 2 cut(s) 13, 542
EcoO109I RGGNCCY 1 cut(s) 100
EcoRII CCWGG 2 cut(s) 221, 635
EcoT38I GRGCYC 2 cut(s) 15, 544
FaeI CATG 4 cut(s) 493, 679, 765, 794
FalI AAGNNNNNCTT 2 cut(s) 947, 979
FatI CATG 4 cut(s) 489, 675, 761, 790
FbaI TGATCA 2 cut(s) 24, 420
Fnu4HI GCNGC 1 cut(s) 380
FokI GGATG 2 cut(s) 20, 250
FriOI GRGCYC 2 cut(s) 15, 544
Fsp4HI GCNGC 1 cut(s) 380
FspBI CTAG 5 cut(s) 84, 158, 333, 470, 503
GlaI GCGC 2 cut(s) 641, 749
GluI GCNGC 1 cut(s) 380
GsuI CTGGAG 2 cut(s) 205, 516
HaeIII GGCC 4 cut(s) 102, 616, 674, 695
HapII CCGG 1 cut(s) 857
HhaI GCGC 2 cut(s) 642, 750
Hin1II CATG 4 cut(s) 493, 679, 765, 794
Hin6I GCGC 2 cut(s) 640, 748
HinP1I GCGC 2 cut(s) 640, 748
HincII GTYRAC 1 cut(s) 876
HindII GTYRAC 1 cut(s) 876
HinfI GANTC 2 cut(s) 529, 589
HpaII CCGG 1 cut(s) 857
HphI GGTGA 2 cut(s) 139, 252
Hpy166II GTNNAC 2 cut(s) 185, 876
Hpy188I TCNGA 1 cut(s) 95
Hpy188III TCNNGA 6 cut(s) 16, 84, 503, 526, 566, 928
Hpy8I GTNNAC 2 cut(s) 185, 876
HpyAV CCTTC 4 cut(s) 181, 282, 394, 820
HpyCH4III ACNGT 1 cut(s) 669
HpyCH4IV ACGT 3 cut(s) 652, 773, 878
HpyCH4V TGCA 5 cut(s) 454, 721, 853, 935, 976
HpyF10VI GCNNNNNNNGC 8 cut(s) 158, 401, 533, 692, 754, 803, 812, 973
HpyF3I CTNAG 3 cut(s) 107, 918, 926
HpySE526I ACGT 3 cut(s) 652, 773, 878
Hsp92II CATG 4 cut(s) 493, 679, 765, 794
HspAI GCGC 2 cut(s) 640, 748
Ksp22I TGATCA 2 cut(s) 24, 420
Kzo9I GATC 5 cut(s) 24, 36, 420, 465, 628
LmnI GCTCC 2 cut(s) 376, 547
Lsp1109I GCAGC 1 cut(s) 366
LweI GCATC 1 cut(s) 225
MaeI CTAG 5 cut(s) 84, 158, 333, 470, 503
MaeII ACGT 3 cut(s) 652, 773, 878
MaeIII GTNAC 4 cut(s) 367, 598, 727, 769
MalI GATC 5 cut(s) 26, 38, 422, 467, 630
MboI GATC 5 cut(s) 24, 36, 420, 465, 628
MboII GAAGA 5 cut(s) 124, 133, 190, 226, 271
MfeI CAATTG 2 cut(s) 384, 901
MhlI GDGCHC 2 cut(s) 15, 544
MlsI TGGCCA 2 cut(s) 616, 695
MluCI AATT 3 cut(s) 384, 901, 936
MluNI TGGCCA 2 cut(s) 616, 695
MlyI GAGTC 1 cut(s) 523
Mox20I TGGCCA 2 cut(s) 616, 695
MscI TGGCCA 2 cut(s) 616, 695
MseI TTAA 4 cut(s) 89, 243, 716, 822
MslI CAYNNNNRTG 3 cut(s) 180, 459, 701
Msp20I TGGCCA 2 cut(s) 616, 695
MspI CCGG 1 cut(s) 857
MspR9I CCNGG 3 cut(s) 223, 637, 857
MunI CAATTG 2 cut(s) 384, 901
Mva1269I GAATGC 1 cut(s) 937
MvaI CCWGG 2 cut(s) 223, 637
MvnI CGCG 4 cut(s) 527, 642, 748, 750
MwoI GCNNNNNNNGC 8 cut(s) 158, 401, 533, 692, 754, 803, 812, 973
NciI CCSGG 1 cut(s) 857
NdeII GATC 5 cut(s) 24, 36, 420, 465, 628
NlaIII CATG 4 cut(s) 493, 679, 765, 794
NlaIV GGNNCC 1 cut(s) 187
NmuCI GTSAC 3 cut(s) 367, 598, 769
NruI TCGCGA 1 cut(s) 527
NspI RCATGY 1 cut(s) 493
OliI CACNNNNGTG 1 cut(s) 701
PaeR7I CTCGAG 1 cut(s) 537
PciI ACATGT 1 cut(s) 489
PctI GAATGC 1 cut(s) 937
PfeI GAWTC 1 cut(s) 589
PkrI GCNGC 1 cut(s) 381
PleI GAGTC 1 cut(s) 523
PpsI GAGTC 1 cut(s) 523
PscI ACATGT 1 cut(s) 489
PshBI ATTAAT 1 cut(s) 89
Psp124BI GAGCTC 2 cut(s) 15, 544
Psp6I CCWGG 2 cut(s) 221, 635
PspGI CCWGG 2 cut(s) 221, 635
PspN4I GGNNCC 1 cut(s) 187
PspPI GGNCC 3 cut(s) 100, 185, 672
PspXI VCTCGAGB 1 cut(s) 537
RruI TCGCGA 1 cut(s) 527
RsaI GTAC 2 cut(s) 440, 494
RsaNI GTAC 2 cut(s) 439, 493
RseI CAYNNNNRTG 3 cut(s) 180, 459, 701
SacI GAGCTC 2 cut(s) 15, 544
SaqAI TTAA 4 cut(s) 89, 243, 716, 822
SatI GCNGC 1 cut(s) 380
Sau3AI GATC 5 cut(s) 24, 36, 420, 465, 628
Sau96I GGNCC 3 cut(s) 100, 185, 672
SchI GAGTC 1 cut(s) 523
ScrFI CCNGG 3 cut(s) 223, 637, 857
SduI GDGCHC 2 cut(s) 15, 544
SfaNI GCATC 1 cut(s) 225
Sfr274I CTCGAG 1 cut(s) 537
SinI GGWCC 1 cut(s) 185
SlaI CTCGAG 1 cut(s) 537
SmiMI CAYNNNNRTG 3 cut(s) 180, 459, 701
SmlI CTYRAG 2 cut(s) 14, 537
SmoI CTYRAG 2 cut(s) 14, 537
Sse9I AATT 3 cut(s) 384, 901, 936
SsiI CCGC 5 cut(s) 150, 648, 806, 815, 830
SspI AATATT 1 cut(s) 510
SspMI CTAG 5 cut(s) 84, 158, 333, 470, 503
SstI GAGCTC 2 cut(s) 15, 544
StyD4I CCNGG 3 cut(s) 221, 635, 855
TaaI ACNGT 1 cut(s) 669
TaiI ACGT 3 cut(s) 655, 776, 881
TaqI TCGA 3 cut(s) 361, 538, 583
TasI AATT 3 cut(s) 384, 901, 936
TatI WGTACW 2 cut(s) 438, 492
TfiI GAWTC 1 cut(s) 589
Tru1I TTAA 4 cut(s) 89, 243, 716, 822
Tru9I TTAA 4 cut(s) 89, 243, 716, 822
TseFI GTSAC 3 cut(s) 367, 598, 769
TseI GCWGC 1 cut(s) 379
Tsp45I GTSAC 3 cut(s) 367, 598, 769
TspDTI ATGAA 5 cut(s) 64, 133, 277, 413, 416
VpaK11BI GGWCC 1 cut(s) 185
VspI ATTAAT 1 cut(s) 89
XbaI TCTAGA 2 cut(s) 83, 502
XceI RCATGY 1 cut(s) 493
XhoI CTCGAG 1 cut(s) 537
XspI CTAG 5 cut(s) 84, 158, 333, 470, 503
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.