Rroxscaffold_2G00120910

Long-chain-alcohol

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000676
Physical Location & Seq
Reverse (-)
53348218 .. 53349168
951 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00120910.1

Sequence Viewer

Length: 951 bp
ATGCCCCTAAATCTCCATTCCTTCCATCTTTGTGCACTCACAACTTTCTTCTTAGTTTGGCTTGGCGTCTTCAAGCTCCTCCTCTTCTCCTTTGGCCTAGGCCCTTTGTCACCACCCCCACCATCAGTCTTCCATTTCATCTCCATAGCTTGCCTCCCCATCAAAATCAAACAAAAATCACCTCCAAAATCACTCCCAAATCCCAGAACCACTCAAAAACCCAAAAAATCTGTGAACCCAATTGGTCAACGTGTCACAAAGGGACTGCCCAATAAGTCAATTTTGTTGGCCGTTAAGGCCTTGGTATTGGGTGTGGTTATTCGTATATACGAGTACAAACCACGTTTACACCCGTATGTGATTACAGTCTTGTGCTGTTGCCATGTGTACTTAGGAGTAGAAATAGTCCTATTTTTGTGTGCAGCCCCAGCTCGAGCCATTTTTGAGTTCGAGATGGAACATCAGTTCAATGAACCTTACCTCTCCACTTCGCTTCAAGACTTTTGGGGCAGGCGATGGAATTTAATGGTCACGAAAATTCTACGACCTACTGTTTACGATCCCATCCGATATGTGTGTGCACGTTTGGTTGGGGCACGGTGGGCAAGGCTCCTGGCTATCATGTCTACCTTTGTTGTATCTGGGTTAATGCACGAGGTGATTTATTACTATCTCACGCGTGTGCAGCCCACGTGGGAAGTAACGTGGTTTTTTGTTTTACAAGGGGTATGCATGGTGGTCGAGGTGGAGATGAAGAAGGCGGAAACCGGCAGATGGTTGTTGCACCCGGCGATTTCGGGGTTGTTGACATTGGTGTTCTTGGCTGTCACTGCCAACTGGCTGTTCTTTCCTCAGTTGCTGAGGAATGGTGTCGATATAAAGGCTTTAGGAGAGTATGAAATTATGGTGGATTTTGTCAAGTCTAACTTACCCCATTATCAATCTCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MBOAT_2

Protein Analysis

316

Amino Acids

36.19

Weight (kDa)

9.56

Isoelectric Point (pI)

41.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MBOAT_2 PF13813 154 - 239 1.3e-19 Membrane bound O-acyl transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 626
AccII CGCG 1 cut(s) 679
AciI CCGC 1 cut(s) 761
AclWI GGATC 1 cut(s) 554
AcoI YGGCCR 1 cut(s) 288
AcsI RAATTY 2 cut(s) 520, 537
AcvI CACGTG 1 cut(s) 693
AcyI GRCGYC 1 cut(s) 66
AdeI CACNNNGTG 1 cut(s) 658
AfaI GTAC 2 cut(s) 335, 389
AfiI CCNNNNNNNGG 1 cut(s) 774
AflIII ACRYGT 2 cut(s) 250, 677
AgsI TTSAA 3 cut(s) 73, 469, 497
AjnI CCWGG 1 cut(s) 612
AjuI GAANNNNNNNTTGG 2 cut(s) 827, 859
AleI CACNNNNGTG 1 cut(s) 680
AloI GAACNNNNNNTCC 2 cut(s) 449, 481
AluBI AGCT 3 cut(s) 76, 149, 431
AluI AGCT 3 cut(s) 76, 149, 431
Alw21I GWGCWC 2 cut(s) 37, 583
Alw44I GTGCAC 2 cut(s) 33, 579
AlwI GGATC 1 cut(s) 554
AlwNI CAGNNNCTG 1 cut(s) 859
Ama87I CYCGRG 1 cut(s) 432
AoxI GGCC 4 cut(s) 94, 100, 288, 297
ApaLI GTGCAC 2 cut(s) 33, 579
ApeKI GCWGC 2 cut(s) 422, 685
ApoI RAATTY 2 cut(s) 520, 537
AspA2I CCTAGG 1 cut(s) 97
AspS9I GGNCC 1 cut(s) 101
AsuC2I CCSGG 1 cut(s) 788
AsuHPI GGTGA 3 cut(s) 102, 171, 670
AvaI CYCGRG 1 cut(s) 432
AvrII CCTAGG 1 cut(s) 97
BaeGI GKGCMC 3 cut(s) 37, 583, 598
BauI CACGAG 1 cut(s) 653
BbrPI CACGTG 1 cut(s) 693
BbsI GAAGAC 2 cut(s) 61, 121
Bbv12I GWGCWC 2 cut(s) 37, 583
BbvCI CCTCAGC 1 cut(s) 860
BbvI GCAGC 2 cut(s) 434, 697
BccI CCATC 7 cut(s) 33, 130, 167, 448, 510, 572, 768
BceAI ACGGC 1 cut(s) 275
BcgI CGANNNNNNTGC 2 cut(s) 721, 755
BciT130I CCWGG 1 cut(s) 614
BcnI CCSGG 1 cut(s) 788
BfaI CTAG 1 cut(s) 98
BglI GCCNNNNNGGC 1 cut(s) 296
BisI GCNGC 2 cut(s) 423, 686
BlnI CCTAGG 1 cut(s) 97
BlsI GCNGC 2 cut(s) 424, 687
Bme1390I CCNGG 2 cut(s) 614, 788
BmeT110I CYCGRG 1 cut(s) 432
BmgT120I GGNCC 1 cut(s) 101
BmiI GGNNCC 1 cut(s) 611
BmrFI CCNGG 2 cut(s) 614, 788
BpiI GAAGAC 2 cut(s) 61, 121
Bpu10I CCTNAGC 1 cut(s) 860
BpuMI CCSGG 1 cut(s) 788
BsaAI YACGTR 1 cut(s) 693
BsaHI GRCGYC 1 cut(s) 66
BsaJI CCNNGG 2 cut(s) 97, 300
Bsc4I CCNNNNNNNGG 1 cut(s) 774
Bse118I RCCGGY 1 cut(s) 767
Bse1I ACTGG 1 cut(s) 842
BseBI CCWGG 1 cut(s) 614
BseDI CCNNGG 2 cut(s) 97, 300
BseGI GGATG 1 cut(s) 564
BseLI CCNNNNNNNGG 1 cut(s) 774
BseMII CTCAG 2 cut(s) 851, 866
BseNI ACTGG 1 cut(s) 842
BseRI GAGGAG 2 cut(s) 68, 71
BseSI GKGCMC 3 cut(s) 37, 583, 598
BseXI GCAGC 2 cut(s) 434, 697
BseYI CCCAGC 1 cut(s) 427
BsgI GTGCAG 2 cut(s) 441, 704
Bsh1236I CGCG 1 cut(s) 679
BshFI GGCC 4 cut(s) 96, 102, 290, 299
BsiHKAI GWGCWC 2 cut(s) 37, 583
BsiHKCI CYCGRG 1 cut(s) 432
BsiSI CCGG 2 cut(s) 768, 788
BslFI GGGAC 1 cut(s) 276
BslI CCNNNNNNNGG 1 cut(s) 774
BsmFI GGGAC 1 cut(s) 276
BsnI GGCC 4 cut(s) 96, 102, 290, 299
BsoBI CYCGRG 1 cut(s) 432
Bsp1286I GDGCHC 3 cut(s) 37, 583, 598
Bsp143I GATC 1 cut(s) 559
BspACI CCGC 1 cut(s) 761
BspANI GGCC 4 cut(s) 96, 102, 290, 299
BspCNI CTCAG 2 cut(s) 852, 865
BspFNI CGCG 1 cut(s) 679
BspLI GGNNCC 1 cut(s) 611
BspPI GGATC 1 cut(s) 554
BsrFI RCCGGY 1 cut(s) 767
BsrI ACTGG 1 cut(s) 842
BssAI RCCGGY 1 cut(s) 767
BssECI CCNNGG 2 cut(s) 97, 300
BssMI GATC 1 cut(s) 559
BssNI GRCGYC 1 cut(s) 66
BssSI CACGAG 1 cut(s) 653
BssT1I CCWWGG 2 cut(s) 97, 300
Bst2BI CACGAG 1 cut(s) 653
Bst2UI CCWGG 1 cut(s) 614
Bst4CI ACNGT 3 cut(s) 367, 553, 600
Bst6I CTCTTC 1 cut(s) 89
BstACI GRCGYC 1 cut(s) 66
BstBAI YACGTR 1 cut(s) 693
BstC8I GCNNGC 2 cut(s) 151, 512
BstDEI CTNAG 4 cut(s) 52, 391, 852, 860
BstF5I GGATG 1 cut(s) 564
BstFNI CGCG 1 cut(s) 679
BstKTI GATC 1 cut(s) 562
BstMBI GATC 1 cut(s) 559
BstMWI GCNNNNNNNGC 5 cut(s) 296, 428, 602, 685, 830
BstNI CCWGG 1 cut(s) 614
BstSCI CCNGG 2 cut(s) 612, 786
BstSLI GKGCMC 3 cut(s) 37, 583, 598
BstUI CGCG 1 cut(s) 679
BstV1I GCAGC 2 cut(s) 434, 697
BstV2I GAAGAC 2 cut(s) 61, 121
BsuRI GGCC 4 cut(s) 96, 102, 290, 299
BtgZI GCGATG 1 cut(s) 529
BtsCI GGATG 1 cut(s) 564
BtsI GCAGTG 1 cut(s) 828
BtsIMutI CAGTG 1 cut(s) 828
Cac8I GCNNGC 2 cut(s) 151, 512
CaiI CAGNNNCTG 1 cut(s) 859
Cfr10I RCCGGY 1 cut(s) 767
Cfr13I GGNCC 1 cut(s) 101
CseI GACGC 1 cut(s) 55
Csp6I GTAC 2 cut(s) 334, 388
CviAII CATG 3 cut(s) 383, 622, 733
CviQI GTAC 2 cut(s) 334, 388
DdeI CTNAG 4 cut(s) 52, 391, 852, 860
DpnI GATC 1 cut(s) 561
DpnII GATC 1 cut(s) 559
DraIII CACNNNGTG 1 cut(s) 658
EaeI YGGCCR 1 cut(s) 288
Eam1104I CTCTTC 1 cut(s) 89
EarI CTCTTC 1 cut(s) 89
EciI GGCGGA 1 cut(s) 776
Eco130I CCWWGG 2 cut(s) 97, 300
Eco147I AGGCCT 1 cut(s) 299
Eco72I CACGTG 1 cut(s) 693
Eco88I CYCGRG 1 cut(s) 432
EcoO109I RGGNCCY 1 cut(s) 101
EcoRII CCWGG 1 cut(s) 612
EcoT14I CCWWGG 2 cut(s) 97, 300
EcoT22I ATGCAT 1 cut(s) 734
ErhI CCWWGG 2 cut(s) 97, 300
FaeI CATG 3 cut(s) 386, 625, 736
FalI AAGNNNNNCTT 2 cut(s) 911, 943
FaqI GGGAC 1 cut(s) 276
FatI CATG 3 cut(s) 382, 621, 732
FblI GTMKAC 1 cut(s) 626
Fnu4HI GCNGC 2 cut(s) 423, 686
FokI GGATG 1 cut(s) 551
Fsp4HI GCNGC 2 cut(s) 423, 686
FspBI CTAG 1 cut(s) 98
GluI GCNGC 2 cut(s) 423, 686
GsaI CCCAGC 1 cut(s) 431
HaeIII GGCC 4 cut(s) 96, 102, 290, 299
HapII CCGG 2 cut(s) 768, 788
HgaI GACGC 1 cut(s) 55
Hin1I GRCGYC 1 cut(s) 66
Hin1II CATG 3 cut(s) 386, 625, 736
HincII GTYRAC 2 cut(s) 248, 807
HindII GTYRAC 2 cut(s) 248, 807
HpaII CCGG 2 cut(s) 768, 788
HphI GGTGA 3 cut(s) 102, 171, 670
Hpy166II GTNNAC 9 cut(s) 35, 235, 248, 347, 388, 556, 581, 627, 807
Hpy188I TCNGA 1 cut(s) 569
Hpy188III TCNNGA 3 cut(s) 451, 497, 532
Hpy8I GTNNAC 9 cut(s) 35, 235, 248, 347, 388, 556, 581, 627, 807
HpyAV CCTTC 2 cut(s) 31, 751
HpyCH4III ACNGT 3 cut(s) 367, 553, 600
HpyCH4IV ACGT 5 cut(s) 250, 343, 583, 692, 704
HpyCH4V TGCA 7 cut(s) 35, 422, 581, 652, 685, 732, 784
HpyF10VI GCNNNNNNNGC 5 cut(s) 296, 428, 602, 685, 830
HpyF3I CTNAG 4 cut(s) 52, 391, 852, 860
HpySE526I ACGT 5 cut(s) 250, 343, 583, 692, 704
Hsp92I GRCGYC 1 cut(s) 66
Hsp92II CATG 3 cut(s) 386, 625, 736
Kzo9I GATC 1 cut(s) 559
LmnI GCTCC 2 cut(s) 81, 615
LpnPI CCDG 9 cut(s) 217, 441, 496, 599, 626, 627, 781, 801, 823
Lsp1109I GCAGC 2 cut(s) 434, 697
MaeI CTAG 1 cut(s) 98
MaeII ACGT 5 cut(s) 250, 343, 583, 692, 704
MaeIII GTNAC 5 cut(s) 108, 253, 529, 700, 826
MalI GATC 1 cut(s) 561
MboI GATC 1 cut(s) 559
MboII GAAGA 5 cut(s) 40, 61, 76, 121, 766
MfeI CAATTG 1 cut(s) 240
MhlI GDGCHC 3 cut(s) 37, 583, 598
MluCI AATT 5 cut(s) 240, 279, 520, 537, 900
MluI ACGCGT 1 cut(s) 677
MnlI CCTC 9 cut(s) 89, 92, 164, 192, 491, 649, 736, 855, 861
Mph1103I ATGCAT 1 cut(s) 734
MseI TTAA 4 cut(s) 294, 524, 647, 949
MslI CAYNNNNRTG 3 cut(s) 30, 354, 680
MspI CCGG 2 cut(s) 768, 788
MspR9I CCNGG 2 cut(s) 614, 788
MunI CAATTG 1 cut(s) 240
MvaI CCWGG 1 cut(s) 614
MvnI CGCG 1 cut(s) 679
MwoI GCNNNNNNNGC 5 cut(s) 296, 428, 602, 685, 830
NciI CCSGG 1 cut(s) 788
NdeII GATC 1 cut(s) 559
NlaIII CATG 3 cut(s) 386, 625, 736
NlaIV GGNNCC 1 cut(s) 611
NmuCI GTSAC 4 cut(s) 108, 253, 529, 826
NsiI ATGCAT 1 cut(s) 734
OliI CACNNNNGTG 1 cut(s) 680
PaeR7I CTCGAG 1 cut(s) 432
PceI AGGCCT 1 cut(s) 299
PkrI GCNGC 2 cut(s) 424, 687
PmaCI CACGTG 1 cut(s) 693
PmlI CACGTG 1 cut(s) 693
Ppu21I YACGTR 1 cut(s) 693
Psp6I CCWGG 1 cut(s) 612
PspCI CACGTG 1 cut(s) 693
PspFI CCCAGC 1 cut(s) 427
PspGI CCWGG 1 cut(s) 612
PspN4I GGNNCC 1 cut(s) 611
PspPI GGNCC 1 cut(s) 101
PspXI VCTCGAGB 1 cut(s) 432
PstNI CAGNNNCTG 1 cut(s) 859
RsaI GTAC 2 cut(s) 335, 389
RsaNI GTAC 2 cut(s) 334, 388
RseI CAYNNNNRTG 3 cut(s) 30, 354, 680
SaqAI TTAA 4 cut(s) 294, 524, 647, 949
SatI GCNGC 2 cut(s) 423, 686
Sau3AI GATC 1 cut(s) 559
Sau96I GGNCC 1 cut(s) 101
ScrFI CCNGG 2 cut(s) 614, 788
SduI GDGCHC 3 cut(s) 37, 583, 598
SfiI GGCCNNNNNGGCC 1 cut(s) 296
Sfr274I CTCGAG 1 cut(s) 432
SlaI CTCGAG 1 cut(s) 432
SmiMI CAYNNNNRTG 3 cut(s) 30, 354, 680
SmlI CTYRAG 1 cut(s) 432
SmoI CTYRAG 1 cut(s) 432
Sse9I AATT 5 cut(s) 240, 279, 520, 537, 900
SseBI AGGCCT 1 cut(s) 299
SsiI CCGC 1 cut(s) 761
SspMI CTAG 1 cut(s) 98
StuI AGGCCT 1 cut(s) 299
StyD4I CCNGG 2 cut(s) 612, 786
StyI CCWWGG 2 cut(s) 97, 300
TaaI ACNGT 3 cut(s) 367, 553, 600
TaiI ACGT 5 cut(s) 253, 346, 586, 695, 707
TaqI TCGA 4 cut(s) 433, 450, 741, 873
TasI AATT 5 cut(s) 240, 279, 520, 537, 900
TatI WGTACW 2 cut(s) 333, 387
Tru1I TTAA 4 cut(s) 294, 524, 647, 949
Tru9I TTAA 4 cut(s) 294, 524, 647, 949
TscAI CASTG 1 cut(s) 835
TseFI GTSAC 4 cut(s) 108, 253, 529, 826
TseI GCWGC 2 cut(s) 422, 685
Tsp45I GTSAC 4 cut(s) 108, 253, 529, 826
TspDTI ATGAA 4 cut(s) 127, 486, 767, 912
TspRI CASTG 1 cut(s) 835
VneI GTGCAC 2 cut(s) 33, 579
XapI RAATTY 2 cut(s) 520, 537
XhoI CTCGAG 1 cut(s) 432
XmaJI CCTAGG 1 cut(s) 97
XmiI GTMKAC 1 cut(s) 626
XspI CTAG 1 cut(s) 98
Zsp2I ATGCAT 1 cut(s) 734
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.