Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0000676

Physical Location & Seq

Genomic Coordinates Reverse (-)

30531099 .. 30531440

Gene Structure 342 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG302500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGGCCACCTTTGCGGTCTCCGGGTTAATGCACGAGGTTACTTATTACTATCTCACGCGCGTGCAGCCCACGTGGGAAGTGACGTGGTTTTTTGTGCTATATGGGGCTTGCGTGGCGGTTGAGGTGGAGGTCAAGAAGGCGGTTGCAGGCAGGTGGAGGGTGCACCCGGTGGTTTCGGGGCTGTTGACGTTTGTGTTCTTGGCTGTGACAGGCAACTGGCTGTTCTTTCCTCAGTGGCTCAGGAATGGTGTTGATACAAGGGCTTTAAGAGAGTATGCAATTATGGTGGATTTTGTAAAGGCTAACTTGCCTCATTTGCATTATCGGCCCAACAAAAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MBOAT_2

Protein Analysis

113

Amino Acids

13.1

Weight (kDa)

9.46

Isoelectric Point (pI)

36.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000676)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34490 AT1G34500 AT1G34520 AT5G51420 AT5G55320 AT5G55330 AT5G55340 AT5G55350 AT5G55360 AT5G55370 AT5G55380
fragaria_vesca	FvH4_1g25220 FvH4_2g09840
malus_domestica	MD03G1191100.v1.1 MD03G1191200.v1.1 MD11G1208100.v1.1
prunus_persica	Prupe.4G227200_v2.0.a1 Prupe.4G227400_v2.0.a1
pyrus_communis	pycom03g14430 pycom11g18170 pycom11g18340
rosa_chinensis	RchiOBHm_Chr2g0123061 RchiOBHm_Chr2g0123071 RchiOBHm_Chr2g0123131 RchiOBHm_Chr6g0266191 RchiOBHm_Chr6g0266201 RchiOBHm_Chr6g0266251 RchiOBHm_Chr6g0266341
rosa_laevigata	RLG00000014105 RLG00000014107 RLG00000018729 RLG00000018730 RLG00000023150
rosa_multiflora	Rmu_sc0000168.1_g000022 Rmu_sc0002235.1_g000075 Rmu_sc0003605.1_g000042 Rmu_sc0005573.1_g000002 Rmu_sc0005573.1_g000004 Rmu_sc0009036.1_g000008 Rmu_sc0009589.1_g000002
rosa_roxburghii	Rroxscaffold_2G00120900 Rroxscaffold_2G00120910 Rroxscaffold_6G00397020 Rroxscaffold_7G00201410 Rroxscaffold_7G00201760 Rroxscaffold_7G00201820
rosa_rugosa	Rorug02G0243000 Rorug02G0243100 Rorug03G0217500 Rorug06G0024700
rosa_samantha	Rh2AG302700 Rh2AG302800 Rh2BG310300 Rh2BG310400 Rh2BG310600 Rh2CG289000 Rh2CG289200 Rh2DG326800 Rh3BG302500 Rh3BG302800 Rh3BG303100 Rh3BG303200 Rh6AG145400 Rh6AG148500 Rh6BG146000 Rh6CG142600 Rh6DG130500
rosa_wichuraiana	Rw0G004920 Rw0G004930 Rw2G024180 Rw2G024190 Rw3G023820 Rw3G023880 Rw6G012560 Rw6G012860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	141
Acc36I	ACCTGC	1 cut(s)	141
AccII	CGCG	2 cut(s)	58, 60
AciI	CCGC	3 cut(s)	14, 116, 140
AcoI	YGGCCR	1 cut(s)	3
AcvI	CACGTG	1 cut(s)	72
AdeI	CACNNNGTG	1 cut(s)	169
AjiI	CACGTC	1 cut(s)	84
AleI	CACNNNNGTG	1 cut(s)	59
AluBI	AGCT	1 cut(s)	339
AluI	AGCT	1 cut(s)	339
Alw21I	GWGCWC	1 cut(s)	165
Alw26I	GTCTC	1 cut(s)	22
Alw44I	GTGCAC	1 cut(s)	161
AoxI	GGCC	2 cut(s)	3, 326
ApaLI	GTGCAC	1 cut(s)	161
ApeKI	GCWGC	1 cut(s)	64
AspLEI	GCGC	1 cut(s)	60
AspS9I	GGNCC	1 cut(s)	327
AsuC2I	CCSGG	2 cut(s)	22, 167
BaeGI	GKGCMC	1 cut(s)	165
BalI	TGGCCA	1 cut(s)	5
BauI	CACGAG	1 cut(s)	32
BbrPI	CACGTG	1 cut(s)	72
Bbv12I	GWGCWC	1 cut(s)	165
BbvI	GCAGC	1 cut(s)	76
BcnI	CCSGG	2 cut(s)	22, 167
BcoDI	GTCTC	1 cut(s)	22
BfuAI	ACCTGC	1 cut(s)	141
BisI	GCNGC	1 cut(s)	65
BlsI	GCNGC	1 cut(s)	66
Bme1390I	CCNGG	2 cut(s)	22, 167
BmgBI	CACGTC	1 cut(s)	84
BmgT120I	GGNCC	1 cut(s)	327
BmrFI	CCNGG	2 cut(s)	22, 167
Bpu10I	CCTNAGC	1 cut(s)	239
BpuMI	CCSGG	2 cut(s)	22, 167
BsaAI	YACGTR	1 cut(s)	72
BsaI	GGTCTC	1 cut(s)	22
Bse1I	ACTGG	1 cut(s)	221
BseMII	CTCAG	2 cut(s)	245, 253
BseNI	ACTGG	1 cut(s)	221
BseSI	GKGCMC	1 cut(s)	165
BseXI	GCAGC	1 cut(s)	76
BsgI	GTGCAG	1 cut(s)	83
Bsh1236I	CGCG	2 cut(s)	58, 60
BshFI	GGCC	2 cut(s)	5, 328
BsiHKAI	GWGCWC	1 cut(s)	165
BsiSI	CCGG	2 cut(s)	21, 167
BsmAI	GTCTC	1 cut(s)	22
BsnI	GGCC	2 cut(s)	5, 328
Bso31I	GGTCTC	1 cut(s)	22
Bsp1286I	GDGCHC	1 cut(s)	165
BspACI	CCGC	3 cut(s)	14, 116, 140
BspANI	GGCC	2 cut(s)	5, 328
BspCNI	CTCAG	2 cut(s)	244, 252
BspFNI	CGCG	2 cut(s)	58, 60
BspMI	ACCTGC	1 cut(s)	141
BspTNI	GGTCTC	1 cut(s)	22
BsrI	ACTGG	1 cut(s)	221
BssSI	CACGAG	1 cut(s)	32
Bst2BI	CACGAG	1 cut(s)	32
BstBAI	YACGTR	1 cut(s)	72
BstC8I	GCNNGC	3 cut(s)	62, 109, 148
BstDEI	CTNAG	2 cut(s)	231, 239
BstFNI	CGCG	2 cut(s)	58, 60
BstHHI	GCGC	1 cut(s)	60
BstMAI	GTCTC	1 cut(s)	22
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 64, 113, 316, 325
BstSCI	CCNGG	2 cut(s)	20, 165
BstSLI	GKGCMC	1 cut(s)	165
BstUI	CGCG	2 cut(s)	58, 60
BstV1I	GCAGC	1 cut(s)	76
BsuRI	GGCC	2 cut(s)	5, 328
BtrI	CACGTC	1 cut(s)	84
BtsIMutI	CAGTG	1 cut(s)	239
BveI	ACCTGC	1 cut(s)	141
Cac8I	GCNNGC	3 cut(s)	62, 109, 148
CfoI	GCGC	1 cut(s)	60
Cfr13I	GGNCC	1 cut(s)	327
CspCI	CAANNNNNGTGG	2 cut(s)	267, 302
DdeI	CTNAG	2 cut(s)	231, 239
DraIII	CACNNNGTG	1 cut(s)	169
EaeI	YGGCCR	1 cut(s)	3
Eco31I	GGTCTC	1 cut(s)	22
Eco72I	CACGTG	1 cut(s)	72
FaiI	YATR	4 cut(s)	100, 102, 276, 284
FalI	AAGNNNNNCTT	2 cut(s)	290, 322
Fnu4HI	GCNGC	1 cut(s)	65
Fsp4HI	GCNGC	1 cut(s)	65
GlaI	GCGC	1 cut(s)	59
GluI	GCNGC	1 cut(s)	65
HaeIII	GGCC	2 cut(s)	5, 328
HapII	CCGG	2 cut(s)	21, 167
HhaI	GCGC	1 cut(s)	60
Hin6I	GCGC	1 cut(s)	58
HinP1I	GCGC	1 cut(s)	58
HincII	GTYRAC	1 cut(s)	186
HindII	GTYRAC	1 cut(s)	186
HpaII	CCGG	2 cut(s)	21, 167
Hpy166II	GTNNAC	2 cut(s)	163, 186
Hpy188III	TCNNGA	2 cut(s)	133, 241
Hpy8I	GTNNAC	2 cut(s)	163, 186
HpyAV	CCTTC	1 cut(s)	130
HpyCH4IV	ACGT	3 cut(s)	71, 83, 188
HpyCH4V	TGCA	6 cut(s)	31, 64, 146, 163, 278, 319
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 64, 113, 316, 325
HpyF3I	CTNAG	2 cut(s)	231, 239
HpySE526I	ACGT	3 cut(s)	71, 83, 188
HspAI	GCGC	1 cut(s)	58
LpnPI	CCDG	7 cut(s)	34, 132, 136, 180, 195, 202, 226
Lsp1109I	GCAGC	1 cut(s)	76
MaeII	ACGT	3 cut(s)	71, 83, 188
MaeIII	GTNAC	3 cut(s)	37, 79, 205
MhlI	GDGCHC	1 cut(s)	165
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	1 cut(s)	279
MluNI	TGGCCA	1 cut(s)	5
MnlI	CCTC	6 cut(s)	28, 115, 121, 150, 240, 321
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	2 cut(s)	26, 266
MslI	CAYNNNNRTG	1 cut(s)	59
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	2 cut(s)	21, 167
MspR9I	CCNGG	2 cut(s)	22, 167
MvnI	CGCG	2 cut(s)	58, 60
MwoI	GCNNNNNNNGC	5 cut(s)	11, 64, 113, 316, 325
NciI	CCSGG	2 cut(s)	22, 167
NmuCI	GTSAC	2 cut(s)	79, 205
OliI	CACNNNNGTG	1 cut(s)	59
PaqCI	CACCTGC	1 cut(s)	141
PkrI	GCNGC	1 cut(s)	66
PmaCI	CACGTG	1 cut(s)	72
PmlI	CACGTG	1 cut(s)	72
Ppu21I	YACGTR	1 cut(s)	72
PspCI	CACGTG	1 cut(s)	72
PspPI	GGNCC	1 cut(s)	327
RseI	CAYNNNNRTG	1 cut(s)	59
SaqAI	TTAA	2 cut(s)	26, 266
SatI	GCNGC	1 cut(s)	65
Sau96I	GGNCC	1 cut(s)	327
ScrFI	CCNGG	2 cut(s)	22, 167
SduI	GDGCHC	1 cut(s)	165
SetI	ASST	9 cut(s)	11, 39, 74, 86, 126, 132, 155, 191, 341
SmiMI	CAYNNNNRTG	1 cut(s)	59
Sse9I	AATT	1 cut(s)	279
SsiI	CCGC	3 cut(s)	14, 116, 140
StyD4I	CCNGG	2 cut(s)	20, 165
TaiI	ACGT	3 cut(s)	74, 86, 191
TasI	AATT	1 cut(s)	279
Tru1I	TTAA	2 cut(s)	26, 266
Tru9I	TTAA	2 cut(s)	26, 266
TscAI	CASTG	1 cut(s)	239
TseFI	GTSAC	2 cut(s)	79, 205
TseI	GCWGC	1 cut(s)	64
Tsp45I	GTSAC	2 cut(s)	79, 205
TspRI	CASTG	1 cut(s)	239
VneI	GTGCAC	1 cut(s)	161

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.