RchiOBHm_Chr2g0123071

Long-chain-alcohol

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000676
Physical Location & Seq
Forward (+)
36205704 .. 36206114
411 bp
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UTR
Exon/CDS
Intron
PRQ49539

Sequence Viewer

Length: 411 bp
ATGGTCACGAAAATTCTACGCCCTATTGTATACGATCCCATCCGATATATGTGTGCACGGTGGGCAAGGCTTCTGGCTATCATGTCCACCTTTGTTGTATCTGGGTTAATGCACGAGGTGATTTATTACTATCTCACGCGTGTGCAGCCCACGTGGGAAGTAACGTGGTTTTTTGTTTTACAAGGGGCATGCATGGTGGTTGAAGTGGAGATGAAGAAGGCGGAAACCGGCACATGGTTGTTGCACTCGGCGATTTCGGGGTTATTGACATTGGTGTTCTTGGCTGTCACTGCCAACTGGCTGTTCTTTCCTCAGTTGCTGAGCAATGGTGTTGATATAAAGGCTTTAGGAGAGTATGAAATTATGGTGGATTTAGTCAAGTCTAACTTACCCCATTATCAATCTCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MBOAT_2

Protein Analysis

136

Amino Acids

15.69

Weight (kDa)

6.89

Isoelectric Point (pI)

40.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MBOAT_2 PF13813 2 - 59 4.1e-09 Membrane bound O-acyl transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 30
AccII CGCG 1 cut(s) 139
AciI CCGC 1 cut(s) 221
AclWI GGATC 1 cut(s) 29
AcsI RAATTY 1 cut(s) 12
AcvI CACGTG 1 cut(s) 153
AdeI CACNNNGTG 1 cut(s) 118
AfiI CCNNNNNNNGG 1 cut(s) 234
AflIII ACRYGT 1 cut(s) 137
AgsI TTSAA 1 cut(s) 203
AjuI GAANNNNNNNTTGG 2 cut(s) 287, 319
AleI CACNNNNGTG 1 cut(s) 140
Alw21I GWGCWC 1 cut(s) 58
Alw44I GTGCAC 1 cut(s) 54
AlwI GGATC 1 cut(s) 29
AlwNI CAGNNNCTG 1 cut(s) 319
ApaLI GTGCAC 1 cut(s) 54
ApeKI GCWGC 1 cut(s) 145
ApoI RAATTY 1 cut(s) 12
AsuHPI GGTGA 1 cut(s) 130
BaeGI GKGCMC 1 cut(s) 58
BauI CACGAG 1 cut(s) 113
BbrPI CACGTG 1 cut(s) 153
Bbv12I GWGCWC 1 cut(s) 58
BbvI GCAGC 1 cut(s) 157
BccI CCATC 1 cut(s) 47
BisI GCNGC 1 cut(s) 146
BlpI GCTNAGC 1 cut(s) 320
BlsI GCNGC 1 cut(s) 147
Bpu1102I GCTNAGC 1 cut(s) 320
BsaAI YACGTR 1 cut(s) 153
Bsc4I CCNNNNNNNGG 1 cut(s) 234
Bse118I RCCGGY 1 cut(s) 227
Bse1I ACTGG 1 cut(s) 302
Bse3DI GCAATG 1 cut(s) 331
BseGI GGATG 1 cut(s) 39
BseLI CCNNNNNNNGG 1 cut(s) 234
BseMI GCAATG 1 cut(s) 331
BseMII CTCAG 2 cut(s) 311, 326
BseNI ACTGG 1 cut(s) 302
BseSI GKGCMC 1 cut(s) 58
BseXI GCAGC 1 cut(s) 157
BsgI GTGCAG 1 cut(s) 164
Bsh1236I CGCG 1 cut(s) 139
BsiHKAI GWGCWC 1 cut(s) 58
BsiSI CCGG 1 cut(s) 228
BslI CCNNNNNNNGG 1 cut(s) 234
Bsp1286I GDGCHC 1 cut(s) 58
Bsp143I GATC 1 cut(s) 34
Bsp1720I GCTNAGC 1 cut(s) 320
BspACI CCGC 1 cut(s) 221
BspCNI CTCAG 2 cut(s) 312, 325
BspFNI CGCG 1 cut(s) 139
BspPI GGATC 1 cut(s) 29
BsrDI GCAATG 1 cut(s) 331
BsrFI RCCGGY 1 cut(s) 227
BsrI ACTGG 1 cut(s) 302
BssAI RCCGGY 1 cut(s) 227
BssMI GATC 1 cut(s) 34
BssNAI GTATAC 1 cut(s) 31
BssSI CACGAG 1 cut(s) 113
Bst1107I GTATAC 1 cut(s) 31
Bst2BI CACGAG 1 cut(s) 113
Bst4CI ACNGT 1 cut(s) 60
BstBAI YACGTR 1 cut(s) 153
BstC8I GCNNGC 1 cut(s) 190
BstDEI CTNAG 2 cut(s) 312, 320
BstF5I GGATG 1 cut(s) 39
BstFNI CGCG 1 cut(s) 139
BstKTI GATC 1 cut(s) 37
BstMBI GATC 1 cut(s) 34
BstMWI GCNNNNNNNGC 3 cut(s) 62, 145, 290
BstNSI RCATGY 1 cut(s) 192
BstSLI GKGCMC 1 cut(s) 58
BstUI CGCG 1 cut(s) 139
BstV1I GCAGC 1 cut(s) 157
BstZ17I GTATAC 1 cut(s) 31
BtsCI GGATG 1 cut(s) 39
BtsI GCAGTG 1 cut(s) 288
BtsIMutI CAGTG 1 cut(s) 288
Cac8I GCNNGC 1 cut(s) 190
CaiI CAGNNNCTG 1 cut(s) 319
Cfr10I RCCGGY 1 cut(s) 227
CspCI CAANNNNNGTGG 2 cut(s) 76, 111
CviAII CATG 4 cut(s) 82, 189, 193, 234
CviJI RGCY 6 cut(s) 70, 77, 148, 284, 301, 344
CviKI_1 RGCY 6 cut(s) 70, 77, 148, 284, 301, 344
DdeI CTNAG 2 cut(s) 312, 320
DpnI GATC 1 cut(s) 36
DpnII GATC 1 cut(s) 34
DraIII CACNNNGTG 1 cut(s) 118
EciI GGCGGA 1 cut(s) 236
Eco72I CACGTG 1 cut(s) 153
EcoT22I ATGCAT 1 cut(s) 194
FaeI CATG 4 cut(s) 85, 192, 196, 237
FalI AAGNNNNNCTT 2 cut(s) 371, 403
FatI CATG 4 cut(s) 81, 188, 192, 233
FblI GTMKAC 1 cut(s) 30
Fnu4HI GCNGC 1 cut(s) 146
FokI GGATG 1 cut(s) 26
Fsp4HI GCNGC 1 cut(s) 146
GluI GCNGC 1 cut(s) 146
HapII CCGG 1 cut(s) 228
Hin1II CATG 4 cut(s) 85, 192, 196, 237
HpaII CCGG 1 cut(s) 228
HphI GGTGA 1 cut(s) 130
Hpy166II GTNNAC 3 cut(s) 31, 56, 87
Hpy188I TCNGA 1 cut(s) 44
Hpy188III TCNNGA 1 cut(s) 7
Hpy8I GTNNAC 3 cut(s) 31, 56, 87
HpyAV CCTTC 1 cut(s) 211
HpyCH4III ACNGT 1 cut(s) 60
HpyCH4IV ACGT 2 cut(s) 152, 164
HpyCH4V TGCA 5 cut(s) 56, 112, 145, 192, 244
HpyF10VI GCNNNNNNNGC 3 cut(s) 62, 145, 290
HpyF3I CTNAG 2 cut(s) 312, 320
HpySE526I ACGT 2 cut(s) 152, 164
Hsp92II CATG 4 cut(s) 85, 192, 196, 237
Kzo9I GATC 1 cut(s) 34
LpnPI CCDG 4 cut(s) 59, 87, 241, 283
Lsp1109I GCAGC 1 cut(s) 157
MaeII ACGT 2 cut(s) 152, 164
MaeIII GTNAC 3 cut(s) 4, 160, 286
MalI GATC 1 cut(s) 36
MboI GATC 1 cut(s) 34
MboII GAAGA 1 cut(s) 226
MhlI GDGCHC 1 cut(s) 58
MluCI AATT 2 cut(s) 12, 360
MluI ACGCGT 1 cut(s) 137
MnlI CCTC 2 cut(s) 109, 321
Mph1103I ATGCAT 1 cut(s) 194
MseI TTAA 2 cut(s) 107, 409
MslI CAYNNNNRTG 1 cut(s) 140
MspI CCGG 1 cut(s) 228
MvnI CGCG 1 cut(s) 139
MwoI GCNNNNNNNGC 3 cut(s) 62, 145, 290
NdeII GATC 1 cut(s) 34
NlaIII CATG 4 cut(s) 85, 192, 196, 237
NmeAIII GCCGAG 1 cut(s) 227
NmuCI GTSAC 2 cut(s) 4, 286
NsiI ATGCAT 1 cut(s) 194
NspI RCATGY 1 cut(s) 192
OliI CACNNNNGTG 1 cut(s) 140
PaeI GCATGC 1 cut(s) 192
PkrI GCNGC 1 cut(s) 147
PmaCI CACGTG 1 cut(s) 153
PmlI CACGTG 1 cut(s) 153
Ppu21I YACGTR 1 cut(s) 153
PspCI CACGTG 1 cut(s) 153
PstNI CAGNNNCTG 1 cut(s) 319
RseI CAYNNNNRTG 1 cut(s) 140
SaqAI TTAA 2 cut(s) 107, 409
SatI GCNGC 1 cut(s) 146
Sau3AI GATC 1 cut(s) 34
SduI GDGCHC 1 cut(s) 58
SetI ASST 4 cut(s) 92, 120, 155, 167
SmiMI CAYNNNNRTG 1 cut(s) 140
SphI GCATGC 1 cut(s) 192
Sse9I AATT 2 cut(s) 12, 360
SsiI CCGC 1 cut(s) 221
TaaI ACNGT 1 cut(s) 60
TaiI ACGT 2 cut(s) 155, 167
TasI AATT 2 cut(s) 12, 360
Tru1I TTAA 2 cut(s) 107, 409
Tru9I TTAA 2 cut(s) 107, 409
TscAI CASTG 1 cut(s) 295
TseFI GTSAC 2 cut(s) 4, 286
TseI GCWGC 1 cut(s) 145
Tsp45I GTSAC 2 cut(s) 4, 286
TspDTI ATGAA 2 cut(s) 227, 372
TspRI CASTG 1 cut(s) 295
VneI GTGCAC 1 cut(s) 54
XapI RAATTY 1 cut(s) 12
XceI RCATGY 1 cut(s) 192
XmiI GTMKAC 1 cut(s) 30
Zsp2I ATGCAT 1 cut(s) 194
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.