Rh2BG310600

Long-chain-alcohol

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000676
Physical Location & Seq
Forward (+)
36357014 .. 36358269
1256 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG310600.1

Sequence Viewer

Length: 780 bp
ATGGAGGATGAGCTCAAGAACTTCATCAAGGTATGGATCACAACCATCTTATGTCTATCTTATTGCCATTACATAGTCTCCAGATTAATCCCTAAGGGCCTGCTTAGGCTCATTTCTCTCCTCCCTGTCTTCTACTTCTTCATCACCACCCCCCTAACTCTCCATTCCTTCCATCTCTGTGGACCCACAACCTTCTTCCTAGTCTGGCTTGGCATCTTCAAGCTCCTCCTCTTCTCCTTTAACCTTGGCCCTCTATCACCACCCCCAGCGTCACTCTTCCATTTCATCTCCATAGCTTGCCTCCCCATCAAAATCAAACCCCCAAATCACAAAACTACCCAAAAACCCAGTAACCCAATTGGTCAAAGTGTCACACAGTGGCTGCCAAACAAGTCAATTGTGGTGGCTGTGAAGGCATTGCTTTTGGGTATGATCATTCATACCTACGAGTACAGACCACATTTGCACCCTTATGTGATCTTAGCCTTGTACTGTTGCCACATGTACCTGGCTCTAGAATTAATCCTGGTCCTGAGCGCGACTCCGGCTCGGGCTCTTTTCAGATTTGAGCTCGAGCCGCAGTCCAACGAGCCTTACCTCTCCACTTCGCTTCAAGACTTTTGGGGCCGTCGATGGAATCTAATGGTCACGAACATCCTGCGCCCAACGGTGTACGATCCCACCCGGCGCGTGTGTGCGCGTGTATTTGGGAAACGGTGGGCAAGGCTGCCGGCTGTGATGGCCACCTTTGCGGTGTCCGGGTTAATGCACGAGAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MBOAT_2

Protein Analysis

259

Amino Acids

29.77

Weight (kDa)

9.63

Isoelectric Point (pI)

54.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MBOAT_2 PF13813 192 - 258 3.6e-15 Membrane bound O-acyl transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 539, 690, 700
AciI CCGC 2 cut(s) 578, 752
AclWI GGATC 2 cut(s) 44, 671
AcoI YGGCCR 1 cut(s) 741
AdeI CACNNNGTG 1 cut(s) 378
AfaI GTAC 4 cut(s) 452, 491, 506, 674
AflIII ACRYGT 1 cut(s) 501
AgsI TTSAA 2 cut(s) 220, 614
AjnI CCWGG 2 cut(s) 507, 525
AluBI AGCT 4 cut(s) 13, 223, 296, 571
AluI AGCT 4 cut(s) 13, 223, 296, 571
Alw21I GWGCWC 2 cut(s) 15, 573
Alw26I GTCTC 1 cut(s) 82
AlwI GGATC 2 cut(s) 44, 671
AlwNI CAGNNNCTG 1 cut(s) 382
Ama87I CYCGRG 2 cut(s) 549, 572
AoxI GGCC 4 cut(s) 97, 247, 625, 741
ApeKI GCWGC 2 cut(s) 382, 727
AseI ATTAAT 2 cut(s) 86, 521
AspLEI GCGC 4 cut(s) 539, 663, 690, 700
AspS9I GGNCC 5 cut(s) 97, 182, 248, 529, 625
AsuC2I CCSGG 2 cut(s) 685, 760
AsuHPI GGTGA 2 cut(s) 136, 249
AvaI CYCGRG 2 cut(s) 549, 572
AvaII GGWCC 2 cut(s) 182, 529
AxyI CCTNAGG 1 cut(s) 93
BalI TGGCCA 1 cut(s) 743
BanII GRGCYC 3 cut(s) 15, 556, 573
BauI CACGAG 1 cut(s) 770
BbsI GAAGAC 1 cut(s) 121
Bbv12I GWGCWC 2 cut(s) 15, 573
BbvI GCAGC 2 cut(s) 369, 714
BccI CCATC 5 cut(s) 53, 180, 314, 627, 733
BceAI ACGGC 1 cut(s) 612
BcgI CGANNNNNNTGC 2 cut(s) 640, 674
BciT130I CCWGG 2 cut(s) 509, 527
BclI TGATCA 1 cut(s) 432
BcnI CCSGG 2 cut(s) 685, 760
BcoDI GTCTC 1 cut(s) 82
BfaI CTAG 3 cut(s) 200, 515, 778
BisI GCNGC 3 cut(s) 383, 578, 728
BlsI GCNGC 3 cut(s) 384, 579, 729
Bme1390I CCNGG 4 cut(s) 509, 527, 685, 760
Bme18I GGWCC 2 cut(s) 182, 529
BmeT110I CYCGRG 2 cut(s) 549, 572
BmgT120I GGNCC 5 cut(s) 97, 182, 248, 529, 625
BmiI GGNNCC 2 cut(s) 184, 626
BmrFI CCNGG 4 cut(s) 509, 527, 685, 760
BmrI ACTGGG 1 cut(s) 342
BmsI GCATC 1 cut(s) 222
BmuI ACTGGG 1 cut(s) 342
BpiI GAAGAC 1 cut(s) 121
BplI GAGNNNNNCTC 2 cut(s) 526, 558
BpmI CTGGAG 1 cut(s) 64
Bpu10I CCTNAGC 2 cut(s) 104, 533
BpuMI CCSGG 2 cut(s) 685, 760
BsaJI CCNNGG 1 cut(s) 244
BsaXI ACNNNNNCTCC 2 cut(s) 62, 92
Bse118I RCCGGY 1 cut(s) 730
Bse1I ACTGG 1 cut(s) 348
Bse21I CCTNAGG 1 cut(s) 93
Bse3DI GCAATG 1 cut(s) 416
BseBI CCWGG 2 cut(s) 509, 527
BseDI CCNNGG 1 cut(s) 244
BseGI GGATG 2 cut(s) 13, 654
BseMI GCAATG 1 cut(s) 416
BseMII CTCAG 1 cut(s) 524
BseNI ACTGG 1 cut(s) 348
BseRI GAGGAG 3 cut(s) 110, 215, 218
BseXI GCAGC 2 cut(s) 369, 714
BseYI CCCAGC 1 cut(s) 265
Bsh1236I CGCG 3 cut(s) 539, 690, 700
BshFI GGCC 4 cut(s) 99, 249, 627, 743
BsiHKAI GWGCWC 2 cut(s) 15, 573
BsiHKCI CYCGRG 2 cut(s) 549, 572
BsiSI CCGG 4 cut(s) 545, 685, 731, 759
BsmAI GTCTC 1 cut(s) 82
BsnI GGCC 4 cut(s) 99, 249, 627, 743
BsoBI CYCGRG 2 cut(s) 549, 572
Bsp1286I GDGCHC 3 cut(s) 15, 556, 573
Bsp143I GATC 4 cut(s) 36, 432, 477, 676
BspACI CCGC 2 cut(s) 578, 752
BspANI GGCC 4 cut(s) 99, 249, 627, 743
BspCNI CTCAG 1 cut(s) 525
BspFNI CGCG 3 cut(s) 539, 690, 700
BspLI GGNNCC 2 cut(s) 184, 626
BspPI GGATC 2 cut(s) 44, 671
BsrDI GCAATG 1 cut(s) 416
BsrFI RCCGGY 1 cut(s) 730
BsrI ACTGG 1 cut(s) 348
BssAI RCCGGY 1 cut(s) 730
BssECI CCNNGG 1 cut(s) 244
BssMI GATC 4 cut(s) 36, 432, 477, 676
BssSI CACGAG 1 cut(s) 770
BssT1I CCWWGG 1 cut(s) 244
Bst2BI CACGAG 1 cut(s) 770
Bst2UI CCWGG 2 cut(s) 509, 527
Bst4CI ACNGT 4 cut(s) 378, 494, 670, 717
Bst6I CTCTTC 2 cut(s) 236, 281
BstC8I GCNNGC 3 cut(s) 101, 298, 732
BstDEI CTNAG 4 cut(s) 93, 104, 481, 533
BstF5I GGATG 2 cut(s) 13, 654
BstFNI CGCG 3 cut(s) 539, 690, 700
BstHHI GCGC 4 cut(s) 539, 663, 690, 700
BstKTI GATC 4 cut(s) 39, 435, 480, 679
BstMAI GTCTC 1 cut(s) 82
BstMBI GATC 4 cut(s) 36, 432, 477, 676
BstMWI GCNNNNNNNGC 5 cut(s) 413, 545, 577, 740, 749
BstNI CCWGG 2 cut(s) 509, 527
BstNSI RCATGY 1 cut(s) 505
BstSCI CCNGG 4 cut(s) 507, 525, 683, 758
BstUI CGCG 3 cut(s) 539, 690, 700
BstV1I GCAGC 2 cut(s) 369, 714
BstV2I GAAGAC 1 cut(s) 121
BstXI CCANNNNNNTGG 1 cut(s) 179
Bsu36I CCTNAGG 1 cut(s) 93
BsuRI GGCC 4 cut(s) 99, 249, 627, 743
BtsCI GGATG 2 cut(s) 13, 654
BtsIMutI CAGTG 1 cut(s) 383
Cac8I GCNNGC 3 cut(s) 101, 298, 732
CaiI CAGNNNCTG 1 cut(s) 382
CfoI GCGC 4 cut(s) 539, 663, 690, 700
Cfr10I RCCGGY 1 cut(s) 730
Cfr13I GGNCC 5 cut(s) 97, 182, 248, 529, 625
CseI GACGC 1 cut(s) 258
Csp6I GTAC 4 cut(s) 451, 490, 505, 673
CspCI CAANNNNNGTGG 2 cut(s) 384, 419
CviAII CATG 1 cut(s) 502
CviQI GTAC 4 cut(s) 451, 490, 505, 673
DdeI CTNAG 4 cut(s) 93, 104, 481, 533
DpnI GATC 4 cut(s) 38, 434, 479, 678
DpnII GATC 4 cut(s) 36, 432, 477, 676
DraIII CACNNNGTG 1 cut(s) 378
EaeI YGGCCR 1 cut(s) 741
Eam1104I CTCTTC 2 cut(s) 236, 281
EarI CTCTTC 2 cut(s) 236, 281
Ecl136II GAGCTC 2 cut(s) 13, 571
Eco130I CCWWGG 1 cut(s) 244
Eco24I GRGCYC 3 cut(s) 15, 556, 573
Eco47I GGWCC 2 cut(s) 182, 529
Eco53kI GAGCTC 2 cut(s) 13, 571
Eco81I CCTNAGG 1 cut(s) 93
Eco88I CYCGRG 2 cut(s) 549, 572
EcoICRI GAGCTC 2 cut(s) 13, 571
EcoO109I RGGNCCY 1 cut(s) 97
EcoRII CCWGG 2 cut(s) 507, 525
EcoT14I CCWWGG 1 cut(s) 244
EcoT38I GRGCYC 3 cut(s) 15, 556, 573
ErhI CCWWGG 1 cut(s) 244
FaeI CATG 1 cut(s) 505
FaiI YATR 8 cut(s) 34, 52, 74, 293, 431, 441, 474, 503
FatI CATG 1 cut(s) 501
FbaI TGATCA 1 cut(s) 432
Fnu4HI GCNGC 3 cut(s) 383, 578, 728
FokI GGATG 2 cut(s) 20, 641
FriOI GRGCYC 3 cut(s) 15, 556, 573
Fsp4HI GCNGC 3 cut(s) 383, 578, 728
FspBI CTAG 3 cut(s) 200, 515, 778
GlaI GCGC 4 cut(s) 538, 662, 689, 699
GluI GCNGC 3 cut(s) 383, 578, 728
GsaI CCCAGC 1 cut(s) 269
GsuI CTGGAG 1 cut(s) 64
HaeIII GGCC 4 cut(s) 99, 249, 627, 743
HapII CCGG 4 cut(s) 545, 685, 731, 759
HgaI GACGC 1 cut(s) 258
HhaI GCGC 4 cut(s) 539, 663, 690, 700
Hin1II CATG 1 cut(s) 505
Hin6I GCGC 4 cut(s) 537, 661, 688, 698
HinP1I GCGC 4 cut(s) 537, 661, 688, 698
HinfI GANTC 2 cut(s) 541, 637
HpaII CCGG 4 cut(s) 545, 685, 731, 759
HphI GGTGA 2 cut(s) 136, 249
Hpy166II GTNNAC 2 cut(s) 182, 673
Hpy188I TCNGA 1 cut(s) 563
Hpy188III TCNNGA 6 cut(s) 16, 81, 515, 532, 614, 649
Hpy8I GTNNAC 2 cut(s) 182, 673
Hpy99I CGWCG 1 cut(s) 633
HpyAV CCTTC 3 cut(s) 178, 202, 406
HpyCH4III ACNGT 4 cut(s) 378, 494, 670, 717
HpyCH4V TGCA 2 cut(s) 466, 769
HpyF10VI GCNNNNNNNGC 5 cut(s) 413, 545, 577, 740, 749
HpyF3I CTNAG 4 cut(s) 93, 104, 481, 533
Hsp92II CATG 1 cut(s) 505
HspAI GCGC 4 cut(s) 537, 661, 688, 698
KroI GCCGGC 1 cut(s) 730
KroNI GCCGGC 1 cut(s) 732
Ksp22I TGATCA 1 cut(s) 432
Kzo9I GATC 4 cut(s) 36, 432, 477, 676
LmnI GCTCC 1 cut(s) 228
Lsp1109I GCAGC 2 cut(s) 369, 714
LweI GCATC 1 cut(s) 222
MaeI CTAG 3 cut(s) 200, 515, 778
MaeIII GTNAC 4 cut(s) 270, 350, 370, 646
MalI GATC 4 cut(s) 38, 434, 479, 678
MboI GATC 4 cut(s) 36, 432, 477, 676
MboII GAAGA 6 cut(s) 121, 130, 187, 208, 223, 268
MfeI CAATTG 2 cut(s) 357, 396
MhlI GDGCHC 3 cut(s) 15, 556, 573
MlsI TGGCCA 1 cut(s) 743
MluCI AATT 3 cut(s) 357, 396, 518
MluNI TGGCCA 1 cut(s) 743
MlyI GAGTC 1 cut(s) 535
MmeI TCCRAC 1 cut(s) 609
MnlI CCTC 6 cut(s) 131, 236, 239, 261, 311, 608
Mox20I TGGCCA 1 cut(s) 743
MroNI GCCGGC 1 cut(s) 730
MscI TGGCCA 1 cut(s) 743
MseI TTAA 4 cut(s) 86, 240, 521, 764
MslI CAYNNNNRTG 2 cut(s) 177, 471
Msp20I TGGCCA 1 cut(s) 743
MspI CCGG 4 cut(s) 545, 685, 731, 759
MspR9I CCNGG 4 cut(s) 509, 527, 685, 760
MunI CAATTG 2 cut(s) 357, 396
MvaI CCWGG 2 cut(s) 509, 527
MvnI CGCG 3 cut(s) 539, 690, 700
MwoI GCNNNNNNNGC 5 cut(s) 413, 545, 577, 740, 749
NaeI GCCGGC 1 cut(s) 732
NciI CCSGG 2 cut(s) 685, 760
NdeII GATC 4 cut(s) 36, 432, 477, 676
NgoMIV GCCGGC 1 cut(s) 730
NlaIII CATG 1 cut(s) 505
NlaIV GGNNCC 2 cut(s) 184, 626
NmuCI GTSAC 3 cut(s) 270, 370, 646
NspI RCATGY 1 cut(s) 505
PaeR7I CTCGAG 1 cut(s) 572
PciI ACATGT 1 cut(s) 501
PdiI GCCGGC 1 cut(s) 732
PfeI GAWTC 1 cut(s) 637
PkrI GCNGC 3 cut(s) 384, 579, 729
PleI GAGTC 1 cut(s) 535
PpsI GAGTC 1 cut(s) 535
PscI ACATGT 1 cut(s) 501
PshBI ATTAAT 2 cut(s) 86, 521
Psp124BI GAGCTC 2 cut(s) 15, 573
Psp6I CCWGG 2 cut(s) 507, 525
PspFI CCCAGC 1 cut(s) 265
PspGI CCWGG 2 cut(s) 507, 525
PspN4I GGNNCC 2 cut(s) 184, 626
PspPI GGNCC 5 cut(s) 97, 182, 248, 529, 625
PspXI VCTCGAGB 1 cut(s) 572
PstNI CAGNNNCTG 1 cut(s) 382
RsaI GTAC 4 cut(s) 452, 491, 506, 674
RsaNI GTAC 4 cut(s) 451, 490, 505, 673
RseI CAYNNNNRTG 2 cut(s) 177, 471
SacI GAGCTC 2 cut(s) 15, 573
SaqAI TTAA 4 cut(s) 86, 240, 521, 764
SatI GCNGC 3 cut(s) 383, 578, 728
Sau3AI GATC 4 cut(s) 36, 432, 477, 676
Sau96I GGNCC 5 cut(s) 97, 182, 248, 529, 625
SchI GAGTC 1 cut(s) 535
ScrFI CCNGG 4 cut(s) 509, 527, 685, 760
SduI GDGCHC 3 cut(s) 15, 556, 573
SfaNI GCATC 1 cut(s) 222
Sfr274I CTCGAG 1 cut(s) 572
SinI GGWCC 2 cut(s) 182, 529
SlaI CTCGAG 1 cut(s) 572
SmiMI CAYNNNNRTG 2 cut(s) 177, 471
SmlI CTYRAG 2 cut(s) 14, 572
SmoI CTYRAG 2 cut(s) 14, 572
Sse9I AATT 3 cut(s) 357, 396, 518
SsiI CCGC 2 cut(s) 578, 752
SspMI CTAG 3 cut(s) 200, 515, 778
SstI GAGCTC 2 cut(s) 15, 573
StyD4I CCNGG 4 cut(s) 507, 525, 683, 758
StyI CCWWGG 1 cut(s) 244
TaaI ACNGT 4 cut(s) 378, 494, 670, 717
TaqI TCGA 2 cut(s) 573, 631
TasI AATT 3 cut(s) 357, 396, 518
TatI WGTACW 2 cut(s) 450, 489
TauI GCSGC 1 cut(s) 580
TfiI GAWTC 1 cut(s) 637
Tru1I TTAA 4 cut(s) 86, 240, 521, 764
Tru9I TTAA 4 cut(s) 86, 240, 521, 764
TscAI CASTG 1 cut(s) 383
TseFI GTSAC 3 cut(s) 270, 370, 646
TseI GCWGC 2 cut(s) 382, 727
Tsp45I GTSAC 3 cut(s) 270, 370, 646
TspDTI ATGAA 4 cut(s) 13, 130, 274, 428
TspRI CASTG 1 cut(s) 383
VpaK11BI GGWCC 2 cut(s) 182, 529
VspI ATTAAT 2 cut(s) 86, 521
XbaI TCTAGA 1 cut(s) 514
XceI RCATGY 1 cut(s) 505
XhoI CTCGAG 1 cut(s) 572
XspI CTAG 3 cut(s) 200, 515, 778
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.