Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0000676

Physical Location & Seq

Genomic Coordinates Reverse (-)

30639581 .. 30639910

Gene Structure 330 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG303100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

ATGGTCACAAATATCCTGCGGCCAACAGTATACGATCCTAGCCGGTGTGTGTGCGAACGTTTAGTTGGGGAACGGTGGGCCACGCTCTCGGCTTTGATGGCCACCTTTGCCGTCTCCGGGTTAATGCACGAGGTTACTTATTACTATCTCACGCGCGTGCAGCCCACGTGGGAAGTGACGTGGTTTTTTGTGCTACATGGGGCTTGCGTGGCGGTTGAGGTGGAGGTCAAGAAGGCGGTTGCCGGCAGGTGGAGGGTGCACCCGGTGGTTTCGGGGCTGTTGACGTTTGTGTTCTTGGTTGTGACAGGCAACTGGCTATTCTTTCCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MBOAT_2

Protein Analysis

109

Amino Acids

12.44

Weight (kDa)

8.57

Isoelectric Point (pI)

39.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MBOAT_2	PF13813	5 - 64	6.5e-09	Membrane bound O-acyl transferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000676)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34490 AT1G34500 AT1G34520 AT5G51420 AT5G55320 AT5G55330 AT5G55340 AT5G55350 AT5G55360 AT5G55370 AT5G55380
fragaria_vesca	FvH4_1g25220 FvH4_2g09840
malus_domestica	MD03G1191100.v1.1 MD03G1191200.v1.1 MD11G1208100.v1.1
prunus_persica	Prupe.4G227200_v2.0.a1 Prupe.4G227400_v2.0.a1
pyrus_communis	pycom03g14430 pycom11g18170 pycom11g18340
rosa_chinensis	RchiOBHm_Chr2g0123061 RchiOBHm_Chr2g0123071 RchiOBHm_Chr2g0123131 RchiOBHm_Chr6g0266191 RchiOBHm_Chr6g0266201 RchiOBHm_Chr6g0266251 RchiOBHm_Chr6g0266341
rosa_laevigata	RLG00000014105 RLG00000014107 RLG00000018729 RLG00000018730 RLG00000023150
rosa_multiflora	Rmu_sc0000168.1_g000022 Rmu_sc0002235.1_g000075 Rmu_sc0003605.1_g000042 Rmu_sc0005573.1_g000002 Rmu_sc0005573.1_g000004 Rmu_sc0009036.1_g000008 Rmu_sc0009589.1_g000002
rosa_roxburghii	Rroxscaffold_2G00120900 Rroxscaffold_2G00120910 Rroxscaffold_6G00397020 Rroxscaffold_7G00201410 Rroxscaffold_7G00201760 Rroxscaffold_7G00201820
rosa_rugosa	Rorug02G0243000 Rorug02G0243100 Rorug03G0217500 Rorug06G0024700
rosa_samantha	Rh2AG302700 Rh2AG302800 Rh2BG310300 Rh2BG310400 Rh2BG310600 Rh2CG289000 Rh2CG289200 Rh2DG326800 Rh3BG302500 Rh3BG302800 Rh3BG303100 Rh3BG303200 Rh6AG145400 Rh6AG148500 Rh6BG146000 Rh6CG142600 Rh6DG130500
rosa_wichuraiana	Rw0G004920 Rw0G004930 Rw2G024180 Rw2G024190 Rw3G023820 Rw3G023880 Rw6G012560 Rw6G012860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	237
Acc36I	ACCTGC	1 cut(s)	237
AccI	GTMKAC	1 cut(s)	30
AccII	CGCG	2 cut(s)	154, 156
AciI	CCGC	3 cut(s)	19, 212, 236
AclI	AACGTT	1 cut(s)	58
AclWI	GGATC	1 cut(s)	29
AcoI	YGGCCR	2 cut(s)	20, 99
AcvI	CACGTG	1 cut(s)	168
AdeI	CACNNNGTG	1 cut(s)	265
AfiI	CCNNNNNNNGG	2 cut(s)	117, 249
AjiI	CACGTC	1 cut(s)	180
AjuI	GAANNNNNNNTTGG	2 cut(s)	48, 80
AleI	CACNNNNGTG	1 cut(s)	155
Alw21I	GWGCWC	1 cut(s)	261
Alw26I	GTCTC	1 cut(s)	118
Alw44I	GTGCAC	1 cut(s)	257
AlwI	GGATC	1 cut(s)	29
AoxI	GGCC	3 cut(s)	20, 78, 99
ApaLI	GTGCAC	1 cut(s)	257
ApeKI	GCWGC	1 cut(s)	160
AspLEI	GCGC	1 cut(s)	156
AspS9I	GGNCC	1 cut(s)	78
AsuC2I	CCSGG	2 cut(s)	118, 263
BaeGI	GKGCMC	1 cut(s)	261
BalI	TGGCCA	1 cut(s)	101
BauI	CACGAG	1 cut(s)	128
BbrPI	CACGTG	1 cut(s)	168
Bbv12I	GWGCWC	1 cut(s)	261
BbvI	GCAGC	1 cut(s)	172
BccI	CCATC	1 cut(s)	91
BceAI	ACGGC	1 cut(s)	95
BcnI	CCSGG	2 cut(s)	118, 263
BcoDI	GTCTC	1 cut(s)	118
BfaI	CTAG	1 cut(s)	39
BfuAI	ACCTGC	1 cut(s)	237
BisI	GCNGC	2 cut(s)	20, 161
BlsI	GCNGC	2 cut(s)	21, 162
Bme1390I	CCNGG	2 cut(s)	118, 263
BmgBI	CACGTC	1 cut(s)	180
BmgT120I	GGNCC	1 cut(s)	78
BmrFI	CCNGG	2 cut(s)	118, 263
BpuMI	CCSGG	2 cut(s)	118, 263
BsaAI	YACGTR	1 cut(s)	168
Bsc4I	CCNNNNNNNGG	2 cut(s)	117, 249
Bse118I	RCCGGY	2 cut(s)	42, 242
Bse1I	ACTGG	1 cut(s)	317
BseLI	CCNNNNNNNGG	2 cut(s)	117, 249
BseNI	ACTGG	1 cut(s)	317
BseSI	GKGCMC	1 cut(s)	261
BseXI	GCAGC	1 cut(s)	172
BsgI	GTGCAG	1 cut(s)	179
Bsh1236I	CGCG	2 cut(s)	154, 156
BshFI	GGCC	3 cut(s)	22, 80, 101
BsiHKAI	GWGCWC	1 cut(s)	261
BsiSI	CCGG	4 cut(s)	43, 117, 243, 263
BslI	CCNNNNNNNGG	2 cut(s)	117, 249
BsmAI	GTCTC	1 cut(s)	118
BsmBI	CGTCTC	1 cut(s)	118
BsnI	GGCC	3 cut(s)	22, 80, 101
Bsp1286I	GDGCHC	1 cut(s)	261
Bsp143I	GATC	1 cut(s)	34
BspACI	CCGC	3 cut(s)	19, 212, 236
BspANI	GGCC	3 cut(s)	22, 80, 101
BspFNI	CGCG	2 cut(s)	154, 156
BspMI	ACCTGC	1 cut(s)	237
BspPI	GGATC	1 cut(s)	29
BsrFI	RCCGGY	2 cut(s)	42, 242
BsrI	ACTGG	1 cut(s)	317
BssAI	RCCGGY	2 cut(s)	42, 242
BssMI	GATC	1 cut(s)	34
BssNAI	GTATAC	1 cut(s)	31
BssSI	CACGAG	1 cut(s)	128
Bst1107I	GTATAC	1 cut(s)	31
Bst2BI	CACGAG	1 cut(s)	128
Bst4CI	ACNGT	2 cut(s)	28, 75
BstBAI	YACGTR	1 cut(s)	168
BstC8I	GCNNGC	3 cut(s)	158, 205, 244
BstDEI	CTNAG	1 cut(s)	327
BstFNI	CGCG	2 cut(s)	154, 156
BstHHI	GCGC	1 cut(s)	156
BstKTI	GATC	1 cut(s)	37
BstMAI	GTCTC	1 cut(s)	118
BstMBI	GATC	1 cut(s)	34
BstMWI	GCNNNNNNNGC	4 cut(s)	98, 107, 160, 209
BstSCI	CCNGG	2 cut(s)	116, 261
BstSLI	GKGCMC	1 cut(s)	261
BstUI	CGCG	2 cut(s)	154, 156
BstV1I	GCAGC	1 cut(s)	172
BstZ17I	GTATAC	1 cut(s)	31
BsuRI	GGCC	3 cut(s)	22, 80, 101
BtrI	CACGTC	1 cut(s)	180
BveI	ACCTGC	1 cut(s)	237
Cac8I	GCNNGC	3 cut(s)	158, 205, 244
CfoI	GCGC	1 cut(s)	156
Cfr10I	RCCGGY	2 cut(s)	42, 242
Cfr13I	GGNCC	1 cut(s)	78
CviAII	CATG	1 cut(s)	197
CviJI	RGCY	9 cut(s)	22, 42, 80, 92, 101, 163, 203, 277, 316
CviKI_1	RGCY	9 cut(s)	22, 42, 80, 92, 101, 163, 203, 277, 316
DdeI	CTNAG	1 cut(s)	327
DpnI	GATC	1 cut(s)	36
DpnII	GATC	1 cut(s)	34
DraIII	CACNNNGTG	1 cut(s)	265
EaeI	YGGCCR	2 cut(s)	20, 99
Eco72I	CACGTG	1 cut(s)	168
Esp3I	CGTCTC	1 cut(s)	118
FaeI	CATG	1 cut(s)	200
FaiI	YATR	2 cut(s)	31, 198
FatI	CATG	1 cut(s)	196
FblI	GTMKAC	1 cut(s)	30
Fnu4HI	GCNGC	2 cut(s)	20, 161
Fsp4HI	GCNGC	2 cut(s)	20, 161
FspBI	CTAG	1 cut(s)	39
GlaI	GCGC	1 cut(s)	155
GluI	GCNGC	2 cut(s)	20, 161
HaeIII	GGCC	3 cut(s)	22, 80, 101
HapII	CCGG	4 cut(s)	43, 117, 243, 263
HhaI	GCGC	1 cut(s)	156
Hin1II	CATG	1 cut(s)	200
Hin6I	GCGC	1 cut(s)	154
HinP1I	GCGC	1 cut(s)	154
HincII	GTYRAC	1 cut(s)	282
HindII	GTYRAC	1 cut(s)	282
HpaII	CCGG	4 cut(s)	43, 117, 243, 263
Hpy166II	GTNNAC	3 cut(s)	31, 259, 282
Hpy188III	TCNNGA	1 cut(s)	229
Hpy8I	GTNNAC	3 cut(s)	31, 259, 282
HpyAV	CCTTC	1 cut(s)	226
HpyCH4III	ACNGT	2 cut(s)	28, 75
HpyCH4IV	ACGT	4 cut(s)	58, 167, 179, 284
HpyCH4V	TGCA	3 cut(s)	127, 160, 259
HpyF10VI	GCNNNNNNNGC	4 cut(s)	98, 107, 160, 209
HpyF3I	CTNAG	1 cut(s)	327
HpySE526I	ACGT	4 cut(s)	58, 167, 179, 284
Hsp92II	CATG	1 cut(s)	200
HspAI	GCGC	1 cut(s)	154
KroI	GCCGGC	1 cut(s)	242
KroNI	GCCGGC	1 cut(s)	244
Kzo9I	GATC	1 cut(s)	34
LpnPI	CCDG	8 cut(s)	29, 56, 130, 232, 256, 276, 291, 298
Lsp1109I	GCAGC	1 cut(s)	172
MaeI	CTAG	1 cut(s)	39
MaeII	ACGT	4 cut(s)	58, 167, 179, 284
MaeIII	GTNAC	4 cut(s)	4, 133, 175, 301
MalI	GATC	1 cut(s)	36
MboI	GATC	1 cut(s)	34
MhlI	GDGCHC	1 cut(s)	261
MlsI	TGGCCA	1 cut(s)	101
MluNI	TGGCCA	1 cut(s)	101
MnlI	CCTC	4 cut(s)	124, 211, 217, 246
Mox20I	TGGCCA	1 cut(s)	101
MroNI	GCCGGC	1 cut(s)	242
MscI	TGGCCA	1 cut(s)	101
MseI	TTAA	1 cut(s)	122
MslI	CAYNNNNRTG	1 cut(s)	155
Msp20I	TGGCCA	1 cut(s)	101
MspI	CCGG	4 cut(s)	43, 117, 243, 263
MspR9I	CCNGG	2 cut(s)	118, 263
MvnI	CGCG	2 cut(s)	154, 156
MwoI	GCNNNNNNNGC	4 cut(s)	98, 107, 160, 209
NaeI	GCCGGC	1 cut(s)	244
NciI	CCSGG	2 cut(s)	118, 263
NdeII	GATC	1 cut(s)	34
NgoMIV	GCCGGC	1 cut(s)	242
NlaIII	CATG	1 cut(s)	200
NmeAIII	GCCGAG	1 cut(s)	68
NmuCI	GTSAC	3 cut(s)	4, 175, 301
OliI	CACNNNNGTG	1 cut(s)	155
PaqCI	CACCTGC	1 cut(s)	237
PdiI	GCCGGC	1 cut(s)	244
PkrI	GCNGC	2 cut(s)	21, 162
PmaCI	CACGTG	1 cut(s)	168
PmlI	CACGTG	1 cut(s)	168
Ppu21I	YACGTR	1 cut(s)	168
Psp1406I	AACGTT	1 cut(s)	58
PspCI	CACGTG	1 cut(s)	168
PspPI	GGNCC	1 cut(s)	78
RseI	CAYNNNNRTG	1 cut(s)	155
SaqAI	TTAA	1 cut(s)	122
SatI	GCNGC	2 cut(s)	20, 161
Sau3AI	GATC	1 cut(s)	34
Sau96I	GGNCC	1 cut(s)	78
ScrFI	CCNGG	2 cut(s)	118, 263
SduI	GDGCHC	1 cut(s)	261
SetI	ASST	9 cut(s)	61, 107, 135, 170, 182, 222, 228, 251, 287
SmiMI	CAYNNNNRTG	1 cut(s)	155
SsiI	CCGC	3 cut(s)	19, 212, 236
SspMI	CTAG	1 cut(s)	39
StyD4I	CCNGG	2 cut(s)	116, 261
TaaI	ACNGT	2 cut(s)	28, 75
TaiI	ACGT	4 cut(s)	61, 170, 182, 287
TauI	GCSGC	1 cut(s)	22
Tru1I	TTAA	1 cut(s)	122
Tru9I	TTAA	1 cut(s)	122
TseFI	GTSAC	3 cut(s)	4, 175, 301
TseI	GCWGC	1 cut(s)	160
Tsp45I	GTSAC	3 cut(s)	4, 175, 301
VneI	GTGCAC	1 cut(s)	257
XmiI	GTMKAC	1 cut(s)	30
XspI	CTAG	1 cut(s)	39

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.