Rmu_sc0005573.1_g000002

Long-chain-alcohol

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005573.1
OG0000676
Physical Location & Seq
Forward (+)
9019 .. 9516
498 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005573.1_g000002.1.cds

Sequence Viewer

Length: 498 bp
ctggaacatcagttcaatgaaccttacctctccacttcgcttcaagacttttggggcaggcgatggaatttaatggtctcgaaaattctacgccctactgtatacgatcccatccgatatatgtgtgcacgtatagttggggcacggtgggcaaggctcctggctaccatgtcgacctttgttgtatctgggttaatgcacgaggtgatttattactatctcacgcgtgtgcagcccacgtgggaagtaacgtggttttttgttttacaaggggcatgcatggtggttgaggtggagatgaagaaggcggaaaccggcacatggttgttgcacccggcgatttcggggttgttgacattggggttcttggctgtcactgccaactggctgttctttcctcagttgctgaggaatggtgttgatataaaggctttgggagagtatgaaattatggtggattttgtcaagtctaacctaccccattatcaatctcattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MBOAT_2

Protein Analysis

165

Amino Acids

19.24

Weight (kDa)

7.98

Isoelectric Point (pI)

46.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 102, 173
AccII CGCG 1 cut(s) 226
AciI CCGC 1 cut(s) 308
AclWI GGATC 1 cut(s) 101
AcsI RAATTY 2 cut(s) 67, 84
AcvI CACGTG 1 cut(s) 240
AdeI CACNNNGTG 1 cut(s) 205
AfiI CCNNNNNNNGG 1 cut(s) 321
AflIII ACRYGT 1 cut(s) 224
AgsI TTSAA 2 cut(s) 16, 44
AjnI CCWGG 1 cut(s) 159
AjuI GAANNNNNNNTTGG 2 cut(s) 374, 406
AleI CACNNNNGTG 1 cut(s) 227
AloI GAACNNNNNNTCC 1 cut(s) 28
Alw21I GWGCWC 1 cut(s) 130
Alw26I GTCTC 1 cut(s) 82
Alw44I GTGCAC 1 cut(s) 126
AlwI GGATC 1 cut(s) 101
AlwNI CAGNNNCTG 1 cut(s) 406
ApaLI GTGCAC 1 cut(s) 126
ApeKI GCWGC 1 cut(s) 232
ApoI RAATTY 2 cut(s) 67, 84
AsuC2I CCSGG 1 cut(s) 335
AsuHPI GGTGA 1 cut(s) 217
BaeGI GKGCMC 2 cut(s) 130, 145
BauI CACGAG 1 cut(s) 200
BbrPI CACGTG 1 cut(s) 240
Bbv12I GWGCWC 1 cut(s) 130
BbvCI CCTCAGC 1 cut(s) 407
BbvI GCAGC 1 cut(s) 244
BccI CCATC 2 cut(s) 57, 119
BciT130I CCWGG 1 cut(s) 161
BcnI CCSGG 1 cut(s) 335
BcoDI GTCTC 1 cut(s) 82
BisI GCNGC 1 cut(s) 233
BlsI GCNGC 1 cut(s) 234
Bme1390I CCNGG 2 cut(s) 161, 335
BmiI GGNNCC 1 cut(s) 158
BmrFI CCNGG 2 cut(s) 161, 335
Bpu10I CCTNAGC 1 cut(s) 407
BpuMI CCSGG 1 cut(s) 335
BsaAI YACGTR 2 cut(s) 131, 240
BsaI GGTCTC 1 cut(s) 82
Bsc4I CCNNNNNNNGG 1 cut(s) 321
Bse118I RCCGGY 1 cut(s) 314
Bse1I ACTGG 1 cut(s) 389
BseBI CCWGG 1 cut(s) 161
BseGI GGATG 1 cut(s) 111
BseLI CCNNNNNNNGG 1 cut(s) 321
BseMII CTCAG 2 cut(s) 398, 413
BseNI ACTGG 1 cut(s) 389
BseSI GKGCMC 2 cut(s) 130, 145
BseXI GCAGC 1 cut(s) 244
BsgI GTGCAG 1 cut(s) 251
Bsh1236I CGCG 1 cut(s) 226
BsiHKAI GWGCWC 1 cut(s) 130
BsiSI CCGG 2 cut(s) 315, 335
BslI CCNNNNNNNGG 1 cut(s) 321
BsmAI GTCTC 1 cut(s) 82
Bso31I GGTCTC 1 cut(s) 82
Bsp1286I GDGCHC 2 cut(s) 130, 145
Bsp143I GATC 1 cut(s) 106
BspACI CCGC 1 cut(s) 308
BspCNI CTCAG 2 cut(s) 399, 412
BspFNI CGCG 1 cut(s) 226
BspLI GGNNCC 1 cut(s) 158
BspPI GGATC 1 cut(s) 101
BspTNI GGTCTC 1 cut(s) 82
BsrFI RCCGGY 1 cut(s) 314
BsrI ACTGG 1 cut(s) 389
BssAI RCCGGY 1 cut(s) 314
BssMI GATC 1 cut(s) 106
BssNAI GTATAC 1 cut(s) 103
BssSI CACGAG 1 cut(s) 200
Bst1107I GTATAC 1 cut(s) 103
Bst2BI CACGAG 1 cut(s) 200
Bst2UI CCWGG 1 cut(s) 161
Bst4CI ACNGT 2 cut(s) 100, 147
BstBAI YACGTR 2 cut(s) 131, 240
BstC8I GCNNGC 2 cut(s) 59, 277
BstDEI CTNAG 2 cut(s) 399, 407
BstF5I GGATG 1 cut(s) 111
BstFNI CGCG 1 cut(s) 226
BstKTI GATC 1 cut(s) 109
BstMAI GTCTC 1 cut(s) 82
BstMBI GATC 1 cut(s) 106
BstMWI GCNNNNNNNGC 3 cut(s) 149, 232, 377
BstNI CCWGG 1 cut(s) 161
BstNSI RCATGY 1 cut(s) 279
BstSCI CCNGG 2 cut(s) 159, 333
BstSLI GKGCMC 2 cut(s) 130, 145
BstUI CGCG 1 cut(s) 226
BstV1I GCAGC 1 cut(s) 244
BstZ17I GTATAC 1 cut(s) 103
BtgZI GCGATG 1 cut(s) 76
BtsCI GGATG 1 cut(s) 111
BtsI GCAGTG 1 cut(s) 375
BtsIMutI CAGTG 1 cut(s) 375
Cac8I GCNNGC 2 cut(s) 59, 277
CaiI CAGNNNCTG 1 cut(s) 406
Cfr10I RCCGGY 1 cut(s) 314
CviAII CATG 4 cut(s) 169, 276, 280, 321
CviJI RGCY 6 cut(s) 157, 164, 235, 371, 388, 431
CviKI_1 RGCY 6 cut(s) 157, 164, 235, 371, 388, 431
DdeI CTNAG 2 cut(s) 399, 407
DpnI GATC 1 cut(s) 108
DpnII GATC 1 cut(s) 106
DraIII CACNNNGTG 1 cut(s) 205
EciI GGCGGA 1 cut(s) 323
Eco31I GGTCTC 1 cut(s) 82
Eco72I CACGTG 1 cut(s) 240
EcoRII CCWGG 1 cut(s) 159
EcoT22I ATGCAT 1 cut(s) 281
FaeI CATG 4 cut(s) 172, 279, 283, 324
FatI CATG 4 cut(s) 168, 275, 279, 320
FblI GTMKAC 2 cut(s) 102, 173
Fnu4HI GCNGC 1 cut(s) 233
FokI GGATG 1 cut(s) 98
Fsp4HI GCNGC 1 cut(s) 233
GluI GCNGC 1 cut(s) 233
HapII CCGG 2 cut(s) 315, 335
Hin1II CATG 4 cut(s) 172, 279, 283, 324
HincII GTYRAC 2 cut(s) 174, 354
HindII GTYRAC 2 cut(s) 174, 354
HpaII CCGG 2 cut(s) 315, 335
HphI GGTGA 1 cut(s) 217
Hpy166II GTNNAC 4 cut(s) 103, 128, 174, 354
Hpy188I TCNGA 1 cut(s) 116
Hpy188III TCNNGA 2 cut(s) 44, 79
Hpy8I GTNNAC 4 cut(s) 103, 128, 174, 354
HpyAV CCTTC 1 cut(s) 298
HpyCH4III ACNGT 2 cut(s) 100, 147
HpyCH4IV ACGT 3 cut(s) 130, 239, 251
HpyCH4V TGCA 5 cut(s) 128, 199, 232, 279, 331
HpyF10VI GCNNNNNNNGC 3 cut(s) 149, 232, 377
HpyF3I CTNAG 2 cut(s) 399, 407
HpySE526I ACGT 3 cut(s) 130, 239, 251
Hsp92II CATG 4 cut(s) 172, 279, 283, 324
Kzo9I GATC 1 cut(s) 106
LmnI GCTCC 1 cut(s) 162
LpnPI CCDG 7 cut(s) 43, 146, 173, 174, 328, 348, 370
Lsp1109I GCAGC 1 cut(s) 244
MaeII ACGT 3 cut(s) 130, 239, 251
MaeIII GTNAC 2 cut(s) 247, 373
MalI GATC 1 cut(s) 108
MboI GATC 1 cut(s) 106
MboII GAAGA 1 cut(s) 313
MhlI GDGCHC 2 cut(s) 130, 145
MluCI AATT 3 cut(s) 67, 84, 447
MluI ACGCGT 1 cut(s) 224
MnlI CCTC 5 cut(s) 38, 196, 283, 402, 408
Mph1103I ATGCAT 1 cut(s) 281
MseI TTAA 3 cut(s) 71, 194, 496
MslI CAYNNNNRTG 1 cut(s) 227
MspI CCGG 2 cut(s) 315, 335
MspR9I CCNGG 2 cut(s) 161, 335
MvaI CCWGG 1 cut(s) 161
MvnI CGCG 1 cut(s) 226
MwoI GCNNNNNNNGC 3 cut(s) 149, 232, 377
NciI CCSGG 1 cut(s) 335
NdeII GATC 1 cut(s) 106
NlaIII CATG 4 cut(s) 172, 279, 283, 324
NlaIV GGNNCC 1 cut(s) 158
NmuCI GTSAC 1 cut(s) 373
NsiI ATGCAT 1 cut(s) 281
NspI RCATGY 1 cut(s) 279
OliI CACNNNNGTG 1 cut(s) 227
PaeI GCATGC 1 cut(s) 279
PkrI GCNGC 1 cut(s) 234
PmaCI CACGTG 1 cut(s) 240
PmlI CACGTG 1 cut(s) 240
Ppu21I YACGTR 2 cut(s) 131, 240
Psp6I CCWGG 1 cut(s) 159
PspCI CACGTG 1 cut(s) 240
PspGI CCWGG 1 cut(s) 159
PspN4I GGNNCC 1 cut(s) 158
PstNI CAGNNNCTG 1 cut(s) 406
RseI CAYNNNNRTG 1 cut(s) 227
SalI GTCGAC 1 cut(s) 172
SaqAI TTAA 3 cut(s) 71, 194, 496
SatI GCNGC 1 cut(s) 233
Sau3AI GATC 1 cut(s) 106
ScrFI CCNGG 2 cut(s) 161, 335
SduI GDGCHC 2 cut(s) 130, 145
SetI ASST 9 cut(s) 25, 30, 133, 179, 207, 242, 254, 294, 477
SmiMI CAYNNNNRTG 1 cut(s) 227
SphI GCATGC 1 cut(s) 279
Sse9I AATT 3 cut(s) 67, 84, 447
SsiI CCGC 1 cut(s) 308
StyD4I CCNGG 2 cut(s) 159, 333
TaaI ACNGT 2 cut(s) 100, 147
TaiI ACGT 3 cut(s) 133, 242, 254
TaqI TCGA 2 cut(s) 80, 173
TasI AATT 3 cut(s) 67, 84, 447
Tru1I TTAA 3 cut(s) 71, 194, 496
Tru9I TTAA 3 cut(s) 71, 194, 496
TscAI CASTG 1 cut(s) 382
TseFI GTSAC 1 cut(s) 373
TseI GCWGC 1 cut(s) 232
Tsp45I GTSAC 1 cut(s) 373
TspDTI ATGAA 3 cut(s) 33, 314, 459
TspRI CASTG 1 cut(s) 382
VneI GTGCAC 1 cut(s) 126
XapI RAATTY 2 cut(s) 67, 84
XceI RCATGY 1 cut(s) 279
XmiI GTMKAC 2 cut(s) 102, 173
Zsp2I ATGCAT 1 cut(s) 281
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.