Rh2DG326800

Long-chain-alcohol

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000676
Physical Location & Seq
Forward (+)
41193867 .. 41194762
896 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG326800.1

Sequence Viewer

Length: 426 bp
ATGGTCACGAAAATTCTATGCCCTACTGTATACGATCCCATCCGATATATGTGTGCACGTATAGTTGGGGCACGGTGGGCAAGGCTTCTGGCTATCATGTCCACCTTTGTTGTATCTGGGTTAATGCACGAGGTGATTTATTACTATCTCACGCGTGTGCAGCCCACGTGGGAAGTAACGTGGTTTTTTGTTTTACAAGGGGCATGCATGGTGGTTGAGGTGGAGATGAAGAAGGCGGAAACCGGCACATGGTTGTTGCACCCGGCGATTTCGGGGTTATTGACATTGGTGTTCTTGGTTGTCACTGCCAACTGGCTGTTCTTTCCTCAGTTGCTGAGGAATGGTGTTGATATAAAAGCTTTAGGAGAGTATAAAATTATGGTGGATTTTGTCAAGTCTAACTTACCCCATTATCAATCTCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MBOAT_2

Protein Analysis

141

Amino Acids

16.26

Weight (kDa)

8.83

Isoelectric Point (pI)

38.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MBOAT_2 PF13813 6 - 64 9.4e-09 Membrane bound O-acyl transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 30
AccII CGCG 1 cut(s) 154
AciI CCGC 1 cut(s) 236
AclWI GGATC 1 cut(s) 29
AcsI RAATTY 1 cut(s) 12
AcvI CACGTG 1 cut(s) 168
AdeI CACNNNGTG 1 cut(s) 133
AfiI CCNNNNNNNGG 1 cut(s) 249
AflIII ACRYGT 1 cut(s) 152
AjuI GAANNNNNNNTTGG 2 cut(s) 302, 334
AleI CACNNNNGTG 1 cut(s) 155
AluBI AGCT 1 cut(s) 359
AluI AGCT 1 cut(s) 359
Alw21I GWGCWC 1 cut(s) 58
Alw44I GTGCAC 1 cut(s) 54
AlwI GGATC 1 cut(s) 29
AlwNI CAGNNNCTG 1 cut(s) 334
ApaLI GTGCAC 1 cut(s) 54
ApeKI GCWGC 1 cut(s) 160
ApoI RAATTY 1 cut(s) 12
AsuC2I CCSGG 1 cut(s) 263
AsuHPI GGTGA 1 cut(s) 145
BaeGI GKGCMC 2 cut(s) 58, 73
BauI CACGAG 1 cut(s) 128
BbrPI CACGTG 1 cut(s) 168
Bbv12I GWGCWC 1 cut(s) 58
BbvCI CCTCAGC 1 cut(s) 335
BbvI GCAGC 1 cut(s) 172
BccI CCATC 1 cut(s) 47
BcnI CCSGG 1 cut(s) 263
BisI GCNGC 1 cut(s) 161
BlsI GCNGC 1 cut(s) 162
Bme1390I CCNGG 1 cut(s) 263
BmrFI CCNGG 1 cut(s) 263
Bpu10I CCTNAGC 1 cut(s) 335
BpuMI CCSGG 1 cut(s) 263
BsaAI YACGTR 2 cut(s) 59, 168
Bsc4I CCNNNNNNNGG 1 cut(s) 249
Bse118I RCCGGY 1 cut(s) 242
Bse1I ACTGG 1 cut(s) 317
BseGI GGATG 1 cut(s) 39
BseLI CCNNNNNNNGG 1 cut(s) 249
BseMII CTCAG 2 cut(s) 326, 341
BseNI ACTGG 1 cut(s) 317
BseSI GKGCMC 2 cut(s) 58, 73
BseXI GCAGC 1 cut(s) 172
BsgI GTGCAG 1 cut(s) 179
Bsh1236I CGCG 1 cut(s) 154
BsiHKAI GWGCWC 1 cut(s) 58
BsiSI CCGG 2 cut(s) 243, 263
BslI CCNNNNNNNGG 1 cut(s) 249
Bsp1286I GDGCHC 2 cut(s) 58, 73
Bsp143I GATC 1 cut(s) 34
BspACI CCGC 1 cut(s) 236
BspCNI CTCAG 2 cut(s) 327, 340
BspFNI CGCG 1 cut(s) 154
BspPI GGATC 1 cut(s) 29
BsrFI RCCGGY 1 cut(s) 242
BsrI ACTGG 1 cut(s) 317
BssAI RCCGGY 1 cut(s) 242
BssMI GATC 1 cut(s) 34
BssNAI GTATAC 1 cut(s) 31
BssSI CACGAG 1 cut(s) 128
Bst1107I GTATAC 1 cut(s) 31
Bst2BI CACGAG 1 cut(s) 128
Bst4CI ACNGT 2 cut(s) 28, 75
BstBAI YACGTR 2 cut(s) 59, 168
BstC8I GCNNGC 1 cut(s) 205
BstDEI CTNAG 2 cut(s) 327, 335
BstF5I GGATG 1 cut(s) 39
BstFNI CGCG 1 cut(s) 154
BstKTI GATC 1 cut(s) 37
BstMBI GATC 1 cut(s) 34
BstMWI GCNNNNNNNGC 2 cut(s) 77, 160
BstNSI RCATGY 1 cut(s) 207
BstSCI CCNGG 1 cut(s) 261
BstSLI GKGCMC 2 cut(s) 58, 73
BstUI CGCG 1 cut(s) 154
BstV1I GCAGC 1 cut(s) 172
BstZ17I GTATAC 1 cut(s) 31
BtsCI GGATG 1 cut(s) 39
BtsI GCAGTG 1 cut(s) 303
BtsIMutI CAGTG 1 cut(s) 303
Cac8I GCNNGC 1 cut(s) 205
CaiI CAGNNNCTG 1 cut(s) 334
Cfr10I RCCGGY 1 cut(s) 242
CspCI CAANNNNNGTGG 2 cut(s) 91, 126
CviAII CATG 4 cut(s) 97, 204, 208, 249
CviJI RGCY 5 cut(s) 85, 92, 163, 316, 359
CviKI_1 RGCY 5 cut(s) 85, 92, 163, 316, 359
DdeI CTNAG 2 cut(s) 327, 335
DpnI GATC 1 cut(s) 36
DpnII GATC 1 cut(s) 34
DraIII CACNNNGTG 1 cut(s) 133
EciI GGCGGA 1 cut(s) 251
Eco72I CACGTG 1 cut(s) 168
EcoT22I ATGCAT 1 cut(s) 209
FaeI CATG 4 cut(s) 100, 207, 211, 252
FalI AAGNNNNNCTT 2 cut(s) 386, 418
FatI CATG 4 cut(s) 96, 203, 207, 248
FblI GTMKAC 1 cut(s) 30
Fnu4HI GCNGC 1 cut(s) 161
FokI GGATG 1 cut(s) 26
Fsp4HI GCNGC 1 cut(s) 161
GluI GCNGC 1 cut(s) 161
HapII CCGG 2 cut(s) 243, 263
Hin1II CATG 4 cut(s) 100, 207, 211, 252
HindIII AAGCTT 1 cut(s) 357
HpaII CCGG 2 cut(s) 243, 263
HphI GGTGA 1 cut(s) 145
Hpy166II GTNNAC 3 cut(s) 31, 56, 102
Hpy188I TCNGA 1 cut(s) 44
Hpy188III TCNNGA 1 cut(s) 7
Hpy8I GTNNAC 3 cut(s) 31, 56, 102
HpyAV CCTTC 1 cut(s) 226
HpyCH4III ACNGT 2 cut(s) 28, 75
HpyCH4IV ACGT 3 cut(s) 58, 167, 179
HpyCH4V TGCA 5 cut(s) 56, 127, 160, 207, 259
HpyF10VI GCNNNNNNNGC 2 cut(s) 77, 160
HpyF3I CTNAG 2 cut(s) 327, 335
HpySE526I ACGT 3 cut(s) 58, 167, 179
Hsp92II CATG 4 cut(s) 100, 207, 211, 252
Kzo9I GATC 1 cut(s) 34
LpnPI CCDG 5 cut(s) 74, 102, 256, 276, 298
Lsp1109I GCAGC 1 cut(s) 172
MaeII ACGT 3 cut(s) 58, 167, 179
MaeIII GTNAC 3 cut(s) 4, 175, 301
MalI GATC 1 cut(s) 36
MboI GATC 1 cut(s) 34
MboII GAAGA 1 cut(s) 241
MhlI GDGCHC 2 cut(s) 58, 73
MluCI AATT 2 cut(s) 12, 375
MluI ACGCGT 1 cut(s) 152
MnlI CCTC 4 cut(s) 124, 211, 330, 336
Mph1103I ATGCAT 1 cut(s) 209
MseI TTAA 2 cut(s) 122, 424
MslI CAYNNNNRTG 1 cut(s) 155
MspI CCGG 2 cut(s) 243, 263
MspR9I CCNGG 1 cut(s) 263
MvnI CGCG 1 cut(s) 154
MwoI GCNNNNNNNGC 2 cut(s) 77, 160
NciI CCSGG 1 cut(s) 263
NdeII GATC 1 cut(s) 34
NlaIII CATG 4 cut(s) 100, 207, 211, 252
NmuCI GTSAC 2 cut(s) 4, 301
NsiI ATGCAT 1 cut(s) 209
NspI RCATGY 1 cut(s) 207
OliI CACNNNNGTG 1 cut(s) 155
PaeI GCATGC 1 cut(s) 207
PkrI GCNGC 1 cut(s) 162
PmaCI CACGTG 1 cut(s) 168
PmlI CACGTG 1 cut(s) 168
Ppu21I YACGTR 2 cut(s) 59, 168
PspCI CACGTG 1 cut(s) 168
PstNI CAGNNNCTG 1 cut(s) 334
RseI CAYNNNNRTG 1 cut(s) 155
SaqAI TTAA 2 cut(s) 122, 424
SatI GCNGC 1 cut(s) 161
Sau3AI GATC 1 cut(s) 34
ScrFI CCNGG 1 cut(s) 263
SduI GDGCHC 2 cut(s) 58, 73
SetI ASST 7 cut(s) 61, 107, 135, 170, 182, 222, 361
SmiMI CAYNNNNRTG 1 cut(s) 155
SphI GCATGC 1 cut(s) 207
Sse9I AATT 2 cut(s) 12, 375
SsiI CCGC 1 cut(s) 236
StyD4I CCNGG 1 cut(s) 261
TaaI ACNGT 2 cut(s) 28, 75
TaiI ACGT 3 cut(s) 61, 170, 182
TasI AATT 2 cut(s) 12, 375
Tru1I TTAA 2 cut(s) 122, 424
Tru9I TTAA 2 cut(s) 122, 424
TscAI CASTG 1 cut(s) 310
TseFI GTSAC 2 cut(s) 4, 301
TseI GCWGC 1 cut(s) 160
Tsp45I GTSAC 2 cut(s) 4, 301
TspDTI ATGAA 1 cut(s) 242
TspRI CASTG 1 cut(s) 310
VneI GTGCAC 1 cut(s) 54
XapI RAATTY 1 cut(s) 12
XceI RCATGY 1 cut(s) 207
XmiI GTMKAC 1 cut(s) 30
Zsp2I ATGCAT 1 cut(s) 209
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.