Rw3G023880

Long-chain-alcohol

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0000676
Physical Location & Seq
Reverse (-)
30409798 .. 30418887
9090 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G023880.1

Sequence Viewer

Length: 906 bp
ATGAAGGATGAGCTCAAGAACTTCATCAAGGTATGGATCACAACCATCTTATGTCTATCTTATTGCTATTACATAGTCTCTAGATTAATCCGAAAGGGGCTGCTCAGGCTCATCTCTCTCCTCCCAGTCTTCTACCTCTTCATCATTGCCCCCCTAACTCTCCATTCCTTCCATCTCTGTGGACCCACAATCGTCTTCCTAGTCTGGCTTGGCATCTCCAGGCTCCATCTCTTTTCCTTTAACCTTGGTCCTCTATCACCACCCCCACCTTCACTCTTCCATTTCATCTCCATAGCTTGCCTCCCCATCAAAATCAAACAAGACTCACCTAGAAAAACACCCCCCCCCCCCCCCCAATCCCAAAACCACCCAAAATCCCAGAAAGCCAATTGGTCAAAGTGTCACAAAGGAGCTGCCAATTGTGGTAGCTGTGAAGGCATTGCTTTTGGGTATCTTGAGCCGCAGTCCAACAAGCCTTATCTCTCAACTTCGCTTCAAGACTTTTGGGGCCGTCGATGGAATCTAATGGTCACAAATATCCTGAGGCCAACGGTATACGATCCTAGCCGGCACGTGTGCGGATGTTTAGTTGGGGAACGGTGGGCCACGCTCTCGGCTTTGATGGCCACCTTTGTGGTCTCCGGGTTACTTTATTACTATCTCATGCGCATGCAGCCCACATGGTTTTTTGTGCTGCATGGGGCTTGCGTAGCGGTTGAGGTGGAGGTCAAGAAGGCGGTTGCCGTTAGGTGGAGGGTGCACCCGGTGGTTTTGGGGCTGTTGACGTTTGTGTTCTTGGATGTGACTGGCAACTGGCTGGCAACTGGCTGTTCTTTCCTCAGTTGCTCAAGAATGGTGTTGATACAAGGGCTTGAGGAGAGTAAACAATTATGGTGGATTTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MBOAT_2

Protein Analysis

301

Amino Acids

34.25

Weight (kDa)

9.49

Isoelectric Point (pI)

54.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MBOAT_2 PF13813 153 - 225 8.5e-13 Membrane bound O-acyl transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 668
AccI GTMKAC 1 cut(s) 555
AciI CCGC 4 cut(s) 461, 579, 713, 737
AclWI GGATC 2 cut(s) 44, 554
AcoI YGGCCR 1 cut(s) 624
AcvI CACGTG 1 cut(s) 574
AdeI CACNNNGTG 1 cut(s) 766
AfiI CCNNNNNNNGG 1 cut(s) 750
AflIII ACRYGT 1 cut(s) 573
AgsI TTSAA 1 cut(s) 497
AjnI CCWGG 1 cut(s) 218
AleI CACNNNNGTG 1 cut(s) 632
AluBI AGCT 4 cut(s) 13, 296, 413, 429
AluI AGCT 4 cut(s) 13, 296, 413, 429
Alw21I GWGCWC 2 cut(s) 15, 762
Alw26I GTCTC 2 cut(s) 82, 643
Alw44I GTGCAC 1 cut(s) 758
AlwI GGATC 2 cut(s) 44, 554
AoxI GGCC 4 cut(s) 508, 545, 603, 624
ApaLI GTGCAC 1 cut(s) 758
ApeKI GCWGC 4 cut(s) 100, 413, 673, 694
AseI ATTAAT 1 cut(s) 86
AspLEI GCGC 1 cut(s) 669
AspS9I GGNCC 4 cut(s) 182, 248, 508, 603
AsuC2I CCSGG 2 cut(s) 643, 764
AsuHPI GGTGA 2 cut(s) 249, 318
AvaII GGWCC 2 cut(s) 182, 248
AxyI CCTNAGG 1 cut(s) 542
BaeGI GKGCMC 1 cut(s) 762
BalI TGGCCA 1 cut(s) 626
BanII GRGCYC 1 cut(s) 15
BbrPI CACGTG 1 cut(s) 574
BbsI GAAGAC 2 cut(s) 121, 187
Bbv12I GWGCWC 2 cut(s) 15, 762
BbvI GCAGC 4 cut(s) 87, 400, 681, 685
BccI CCATC 6 cut(s) 53, 180, 234, 314, 510, 616
BceAI ACGGC 2 cut(s) 495, 728
BciT130I CCWGG 1 cut(s) 220
BcnI CCSGG 2 cut(s) 643, 764
BcoDI GTCTC 2 cut(s) 82, 643
BfaI CTAG 4 cut(s) 81, 200, 330, 564
BisI GCNGC 5 cut(s) 101, 414, 461, 674, 695
BlsI GCNGC 5 cut(s) 102, 415, 462, 675, 696
Bme1390I CCNGG 3 cut(s) 220, 643, 764
Bme18I GGWCC 2 cut(s) 182, 248
BmgT120I GGNCC 4 cut(s) 182, 248, 508, 603
BmiI GGNNCC 3 cut(s) 184, 224, 509
BmrFI CCNGG 3 cut(s) 220, 643, 764
BmrI ACTGGG 1 cut(s) 119
BmsI GCATC 1 cut(s) 222
BmuI ACTGGG 1 cut(s) 119
BpiI GAAGAC 2 cut(s) 121, 187
BpmI CTGGAG 1 cut(s) 202
Bpu10I CCTNAGC 1 cut(s) 104
BpuEI CTTGAG 3 cut(s) 476, 832, 893
BpuMI CCSGG 2 cut(s) 643, 764
BsaAI YACGTR 1 cut(s) 574
BsaI GGTCTC 1 cut(s) 643
BsaJI CCNNGG 1 cut(s) 244
Bsc4I CCNNNNNNNGG 1 cut(s) 750
Bse118I RCCGGY 1 cut(s) 567
Bse1I ACTGG 4 cut(s) 125, 811, 818, 829
Bse21I CCTNAGG 1 cut(s) 542
Bse3DI GCAATG 2 cut(s) 144, 438
BseBI CCWGG 1 cut(s) 220
BseDI CCNNGG 1 cut(s) 244
BseGI GGATG 3 cut(s) 13, 587, 805
BseLI CCNNNNNNNGG 1 cut(s) 750
BseMI GCAATG 2 cut(s) 144, 438
BseMII CTCAG 3 cut(s) 118, 533, 853
BseNI ACTGG 4 cut(s) 125, 811, 818, 829
BseRI GAGGAG 2 cut(s) 110, 890
BseSI GKGCMC 1 cut(s) 762
BseXI GCAGC 4 cut(s) 87, 400, 681, 685
BshFI GGCC 4 cut(s) 510, 547, 605, 626
BsiHKAI GWGCWC 2 cut(s) 15, 762
BsiSI CCGG 3 cut(s) 568, 642, 764
BslI CCNNNNNNNGG 1 cut(s) 750
BsmAI GTCTC 2 cut(s) 82, 643
BsnI GGCC 4 cut(s) 510, 547, 605, 626
Bso31I GGTCTC 1 cut(s) 643
Bsp1286I GDGCHC 2 cut(s) 15, 762
Bsp143I GATC 2 cut(s) 36, 559
BspACI CCGC 4 cut(s) 461, 579, 713, 737
BspANI GGCC 4 cut(s) 510, 547, 605, 626
BspCNI CTCAG 3 cut(s) 117, 534, 852
BspLI GGNNCC 3 cut(s) 184, 224, 509
BspPI GGATC 2 cut(s) 44, 554
BspTNI GGTCTC 1 cut(s) 643
BsrDI GCAATG 2 cut(s) 144, 438
BsrFI RCCGGY 1 cut(s) 567
BsrI ACTGG 4 cut(s) 125, 811, 818, 829
BssAI RCCGGY 1 cut(s) 567
BssECI CCNNGG 1 cut(s) 244
BssMI GATC 2 cut(s) 36, 559
BssNAI GTATAC 1 cut(s) 556
BssT1I CCWWGG 1 cut(s) 244
Bst1107I GTATAC 1 cut(s) 556
Bst2UI CCWGG 1 cut(s) 220
Bst4CI ACNGT 2 cut(s) 553, 600
Bst6I CTCTTC 2 cut(s) 143, 281
BstBAI YACGTR 1 cut(s) 574
BstC8I GCNNGC 5 cut(s) 298, 569, 671, 706, 819
BstDEI CTNAG 3 cut(s) 104, 542, 839
BstF5I GGATG 3 cut(s) 13, 587, 805
BstHHI GCGC 1 cut(s) 669
BstKTI GATC 2 cut(s) 39, 562
BstMAI GTCTC 2 cut(s) 82, 643
BstMBI GATC 2 cut(s) 36, 559
BstMWI GCNNNNNNNGC 5 cut(s) 106, 435, 623, 673, 710
BstNI CCWGG 1 cut(s) 220
BstNSI RCATGY 1 cut(s) 673
BstSCI CCNGG 3 cut(s) 218, 641, 762
BstSLI GKGCMC 1 cut(s) 762
BstV1I GCAGC 4 cut(s) 87, 400, 681, 685
BstV2I GAAGAC 2 cut(s) 121, 187
BstXI CCANNNNNNTGG 2 cut(s) 179, 634
BstZ17I GTATAC 1 cut(s) 556
Bsu36I CCTNAGG 1 cut(s) 542
BsuRI GGCC 4 cut(s) 510, 547, 605, 626
BtsCI GGATG 3 cut(s) 13, 587, 805
Cac8I GCNNGC 5 cut(s) 298, 569, 671, 706, 819
CfoI GCGC 1 cut(s) 669
Cfr10I RCCGGY 1 cut(s) 567
Cfr13I GGNCC 4 cut(s) 182, 248, 508, 603
CspCI CAANNNNNGTGG 1 cut(s) 875
CviAII CATG 4 cut(s) 664, 670, 681, 698
DdeI CTNAG 3 cut(s) 104, 542, 839
DpnI GATC 2 cut(s) 38, 561
DpnII GATC 2 cut(s) 36, 559
DraIII CACNNNGTG 1 cut(s) 766
EaeI YGGCCR 1 cut(s) 624
Eam1104I CTCTTC 2 cut(s) 143, 281
EarI CTCTTC 2 cut(s) 143, 281
Ecl136II GAGCTC 1 cut(s) 13
Eco130I CCWWGG 1 cut(s) 244
Eco24I GRGCYC 1 cut(s) 15
Eco31I GGTCTC 1 cut(s) 643
Eco47I GGWCC 2 cut(s) 182, 248
Eco53kI GAGCTC 1 cut(s) 13
Eco72I CACGTG 1 cut(s) 574
Eco81I CCTNAGG 1 cut(s) 542
EcoICRI GAGCTC 1 cut(s) 13
EcoRII CCWGG 1 cut(s) 218
EcoT14I CCWWGG 1 cut(s) 244
EcoT38I GRGCYC 1 cut(s) 15
ErhI CCWWGG 1 cut(s) 244
FaeI CATG 4 cut(s) 667, 673, 684, 701
FatI CATG 4 cut(s) 663, 669, 680, 697
FblI GTMKAC 1 cut(s) 555
Fnu4HI GCNGC 5 cut(s) 101, 414, 461, 674, 695
FokI GGATG 3 cut(s) 20, 594, 812
FriOI GRGCYC 1 cut(s) 15
Fsp4HI GCNGC 5 cut(s) 101, 414, 461, 674, 695
FspAI RTGCGCAY 1 cut(s) 668
FspBI CTAG 4 cut(s) 81, 200, 330, 564
FspI TGCGCA 1 cut(s) 668
GlaI GCGC 1 cut(s) 668
GluI GCNGC 5 cut(s) 101, 414, 461, 674, 695
GsuI CTGGAG 1 cut(s) 202
HaeIII GGCC 4 cut(s) 510, 547, 605, 626
HapII CCGG 3 cut(s) 568, 642, 764
HhaI GCGC 1 cut(s) 669
Hin1II CATG 4 cut(s) 667, 673, 684, 701
Hin6I GCGC 1 cut(s) 667
HinP1I GCGC 1 cut(s) 667
HincII GTYRAC 1 cut(s) 783
HindII GTYRAC 1 cut(s) 783
HinfI GANTC 2 cut(s) 323, 520
HpaII CCGG 3 cut(s) 568, 642, 764
HphI GGTGA 2 cut(s) 249, 318
Hpy166II GTNNAC 5 cut(s) 182, 556, 760, 783, 884
Hpy188I TCNGA 1 cut(s) 92
Hpy188III TCNNGA 7 cut(s) 16, 81, 455, 497, 541, 730, 849
Hpy8I GTNNAC 5 cut(s) 182, 556, 760, 783, 884
Hpy99I CGWCG 1 cut(s) 516
HpyAV CCTTC 4 cut(s) 178, 279, 428, 727
HpyCH4III ACNGT 2 cut(s) 553, 600
HpyCH4IV ACGT 2 cut(s) 573, 785
HpyCH4V TGCA 3 cut(s) 673, 697, 760
HpyF10VI GCNNNNNNNGC 5 cut(s) 106, 435, 623, 673, 710
HpyF3I CTNAG 3 cut(s) 104, 542, 839
HpySE526I ACGT 2 cut(s) 573, 785
Hsp92II CATG 4 cut(s) 667, 673, 684, 701
HspAI GCGC 1 cut(s) 667
KroI GCCGGC 1 cut(s) 567
KroNI GCCGGC 1 cut(s) 569
Kzo9I GATC 2 cut(s) 36, 559
LmnI GCTCC 2 cut(s) 228, 410
Lsp1109I GCAGC 4 cut(s) 87, 400, 681, 685
LweI GCATC 1 cut(s) 222
MaeI CTAG 4 cut(s) 81, 200, 330, 564
MaeII ACGT 2 cut(s) 573, 785
MaeIII GTNAC 4 cut(s) 401, 529, 645, 802
MalI GATC 2 cut(s) 38, 561
MboI GATC 2 cut(s) 36, 559
MboII GAAGA 4 cut(s) 121, 130, 187, 268
MfeI CAATTG 2 cut(s) 388, 418
MhlI GDGCHC 2 cut(s) 15, 762
MlsI TGGCCA 1 cut(s) 626
MluCI AATT 3 cut(s) 388, 418, 887
MluNI TGGCCA 1 cut(s) 626
MlyI GAGTC 1 cut(s) 317
MmeI TCCRAC 1 cut(s) 492
Mox20I TGGCCA 1 cut(s) 626
MroNI GCCGGC 1 cut(s) 567
MscI TGGCCA 1 cut(s) 626
MseI TTAA 2 cut(s) 86, 240
MslI CAYNNNNRTG 3 cut(s) 177, 632, 668
Msp20I TGGCCA 1 cut(s) 626
MspI CCGG 3 cut(s) 568, 642, 764
MspR9I CCNGG 3 cut(s) 220, 643, 764
MunI CAATTG 2 cut(s) 388, 418
MvaI CCWGG 1 cut(s) 220
MwoI GCNNNNNNNGC 5 cut(s) 106, 435, 623, 673, 710
NaeI GCCGGC 1 cut(s) 569
NciI CCSGG 2 cut(s) 643, 764
NdeII GATC 2 cut(s) 36, 559
NgoMIV GCCGGC 1 cut(s) 567
NlaIII CATG 4 cut(s) 667, 673, 684, 701
NlaIV GGNNCC 3 cut(s) 184, 224, 509
NmeAIII GCCGAG 1 cut(s) 593
NmuCI GTSAC 3 cut(s) 401, 529, 802
NsbI TGCGCA 1 cut(s) 668
NspI RCATGY 1 cut(s) 673
OliI CACNNNNGTG 1 cut(s) 632
PaeI GCATGC 1 cut(s) 673
PdiI GCCGGC 1 cut(s) 569
PfeI GAWTC 1 cut(s) 520
PkrI GCNGC 5 cut(s) 102, 415, 462, 675, 696
PleI GAGTC 1 cut(s) 317
PmaCI CACGTG 1 cut(s) 574
PmlI CACGTG 1 cut(s) 574
PpsI GAGTC 1 cut(s) 317
Ppu21I YACGTR 1 cut(s) 574
PshBI ATTAAT 1 cut(s) 86
Psp124BI GAGCTC 1 cut(s) 15
Psp6I CCWGG 1 cut(s) 218
PspCI CACGTG 1 cut(s) 574
PspGI CCWGG 1 cut(s) 218
PspN4I GGNNCC 3 cut(s) 184, 224, 509
PspPI GGNCC 4 cut(s) 182, 248, 508, 603
RseI CAYNNNNRTG 3 cut(s) 177, 632, 668
SacI GAGCTC 1 cut(s) 15
SaqAI TTAA 2 cut(s) 86, 240
SatI GCNGC 5 cut(s) 101, 414, 461, 674, 695
Sau3AI GATC 2 cut(s) 36, 559
Sau96I GGNCC 4 cut(s) 182, 248, 508, 603
SchI GAGTC 1 cut(s) 317
ScrFI CCNGG 3 cut(s) 220, 643, 764
SduI GDGCHC 2 cut(s) 15, 762
SfaNI GCATC 1 cut(s) 222
SinI GGWCC 2 cut(s) 182, 248
SmiMI CAYNNNNRTG 3 cut(s) 177, 632, 668
SmlI CTYRAG 4 cut(s) 14, 455, 847, 872
SmoI CTYRAG 4 cut(s) 14, 455, 847, 872
SphI GCATGC 1 cut(s) 673
Sse9I AATT 3 cut(s) 388, 418, 887
SsiI CCGC 4 cut(s) 461, 579, 713, 737
SspMI CTAG 4 cut(s) 81, 200, 330, 564
SstI GAGCTC 1 cut(s) 15
StyD4I CCNGG 3 cut(s) 218, 641, 762
StyI CCWWGG 1 cut(s) 244
TaaI ACNGT 2 cut(s) 553, 600
TaiI ACGT 2 cut(s) 576, 788
TaqI TCGA 1 cut(s) 514
TasI AATT 3 cut(s) 388, 418, 887
TauI GCSGC 1 cut(s) 463
TfiI GAWTC 1 cut(s) 520
Tru1I TTAA 2 cut(s) 86, 240
Tru9I TTAA 2 cut(s) 86, 240
TseFI GTSAC 3 cut(s) 401, 529, 802
TseI GCWGC 4 cut(s) 100, 413, 673, 694
Tsp45I GTSAC 3 cut(s) 401, 529, 802
TspDTI ATGAA 4 cut(s) 13, 17, 130, 274
VneI GTGCAC 1 cut(s) 758
VpaK11BI GGWCC 2 cut(s) 182, 248
VspI ATTAAT 1 cut(s) 86
XbaI TCTAGA 1 cut(s) 80
XceI RCATGY 1 cut(s) 673
XmiI GTMKAC 1 cut(s) 555
XspI CTAG 4 cut(s) 81, 200, 330, 564
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.