Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000676

Physical Location & Seq

Genomic Coordinates Forward (+)

22366013 .. 22366502

Gene Structure 490 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ23875

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGCACGAGCTCTTCTTTTACTACGTCACTCGTGCGCGTCCCACAGGGGAAATGATGTGCTTCTTTGTCCTACAAGGTGTGTGCTTGGCAATTGAACTAGAGGTGAAGAAGGCGTTGGCTCATAGGGTACGGTTTCACCCGCTAGTTTCAGGGCTGTTGACGTTGGTGTTTTTGATTGTCACTACTGATTGGCTCCTTTTCCCTCACATAATCAGAACTGGTGCGGATGCAAAGAGTTTAGAAGAGTGTGCCAGTATGGTGGATTTTGTGAAGGCCAACATTTCCCCATTGTATTATTGGCAGAAGAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003993 GO:0005488 GO:0005506 GO:0005575 GO:0005576 GO:0005615 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0006793 GO:0006796 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0008199 GO:0008270 GO:0009267 GO:0009505 GO:0009506 GO:0009605 GO:0009987 GO:0009991 GO:0016036 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0030054 GO:0030145 GO:0030312 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0042578 GO:0042594 GO:0043167 GO:0043169 GO:0044237 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0050896 GO:0051716 GO:0055044 GO:0071496 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Metallophos Metallophos_C Pur_ac_phosph_N

Protein Analysis

103

Amino Acids

11.88

Weight (kDa)

7.76

Isoelectric Point (pI)

43.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000676)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34490 AT1G34500 AT1G34520 AT5G51420 AT5G55320 AT5G55330 AT5G55340 AT5G55350 AT5G55360 AT5G55370 AT5G55380
fragaria_vesca	FvH4_1g25220 FvH4_2g09840
malus_domestica	MD03G1191100.v1.1 MD03G1191200.v1.1 MD11G1208100.v1.1
prunus_persica	Prupe.4G227200_v2.0.a1 Prupe.4G227400_v2.0.a1
pyrus_communis	pycom03g14430 pycom11g18170 pycom11g18340
rosa_chinensis	RchiOBHm_Chr2g0123061 RchiOBHm_Chr2g0123071 RchiOBHm_Chr2g0123131 RchiOBHm_Chr6g0266191 RchiOBHm_Chr6g0266201 RchiOBHm_Chr6g0266251 RchiOBHm_Chr6g0266341
rosa_laevigata	RLG00000014105 RLG00000014107 RLG00000018729 RLG00000018730 RLG00000023150
rosa_multiflora	Rmu_sc0000168.1_g000022 Rmu_sc0002235.1_g000075 Rmu_sc0003605.1_g000042 Rmu_sc0005573.1_g000002 Rmu_sc0005573.1_g000004 Rmu_sc0009036.1_g000008 Rmu_sc0009589.1_g000002
rosa_roxburghii	Rroxscaffold_2G00120900 Rroxscaffold_2G00120910 Rroxscaffold_6G00397020 Rroxscaffold_7G00201410 Rroxscaffold_7G00201760 Rroxscaffold_7G00201820
rosa_rugosa	Rorug02G0243000 Rorug02G0243100 Rorug03G0217500 Rorug06G0024700
rosa_samantha	Rh2AG302700 Rh2AG302800 Rh2BG310300 Rh2BG310400 Rh2BG310600 Rh2CG289000 Rh2CG289200 Rh2DG326800 Rh3BG302500 Rh3BG302800 Rh3BG303100 Rh3BG303200 Rh6AG145400 Rh6AG148500 Rh6BG146000 Rh6CG142600 Rh6DG130500
rosa_wichuraiana	Rw0G004920 Rw0G004930 Rw2G024180 Rw2G024190 Rw3G023820 Rw3G023880 Rw6G012560 Rw6G012860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	37
AciI	CCGC	2 cut(s)	140, 224
AfaI	GTAC	1 cut(s)	129
AgsI	TTSAA	1 cut(s)	95
AjuI	GAANNNNNNNTTGG	2 cut(s)	98, 130
AluBI	AGCT	1 cut(s)	10
AluI	AGCT	1 cut(s)	10
Alw21I	GWGCWC	1 cut(s)	12
AoxI	GGCC	1 cut(s)	273
AspLEI	GCGC	1 cut(s)	37
AsuHPI	GGTGA	2 cut(s)	115, 128
BanII	GRGCYC	1 cut(s)	12
BauI	CACGAG	2 cut(s)	5, 30
Bbv12I	GWGCWC	1 cut(s)	12
BfaI	CTAG	2 cut(s)	98, 143
BmiI	GGNNCC	1 cut(s)	194
BmsI	GCATC	1 cut(s)	217
Bse1I	ACTGG	2 cut(s)	223, 252
BseGI	GGATG	1 cut(s)	232
BseNI	ACTGG	2 cut(s)	223, 252
Bsh1236I	CGCG	1 cut(s)	37
BshFI	GGCC	1 cut(s)	275
BsiHKAI	GWGCWC	1 cut(s)	12
BslFI	GGGAC	1 cut(s)	24
BsmFI	GGGAC	1 cut(s)	24
BsnI	GGCC	1 cut(s)	275
Bsp1286I	GDGCHC	1 cut(s)	12
BspACI	CCGC	2 cut(s)	140, 224
BspANI	GGCC	1 cut(s)	275
BspFNI	CGCG	1 cut(s)	37
BspLI	GGNNCC	1 cut(s)	194
BspQI	GCTCTTC	1 cut(s)	17
BsrI	ACTGG	2 cut(s)	223, 252
BssSI	CACGAG	2 cut(s)	5, 30
Bst2BI	CACGAG	2 cut(s)	5, 30
Bst4CI	ACNGT	1 cut(s)	132
Bst6I	CTCTTC	3 cut(s)	17, 237, 299
BstF5I	GGATG	1 cut(s)	232
BstFNI	CGCG	1 cut(s)	37
BstHHI	GCGC	1 cut(s)	37
BstUI	CGCG	1 cut(s)	37
BstXI	CCANNNNNNTGG	1 cut(s)	259
BsuRI	GGCC	1 cut(s)	275
BtsCI	GGATG	1 cut(s)	232
CfoI	GCGC	1 cut(s)	37
CseI	GACGC	1 cut(s)	26
Csp6I	GTAC	1 cut(s)	128
CviJI	RGCY	5 cut(s)	10, 119, 154, 193, 275
CviKI_1	RGCY	5 cut(s)	10, 119, 154, 193, 275
CviQI	GTAC	1 cut(s)	128
Eam1104I	CTCTTC	3 cut(s)	17, 237, 299
EarI	CTCTTC	3 cut(s)	17, 237, 299
Ecl136II	GAGCTC	1 cut(s)	10
Eco24I	GRGCYC	1 cut(s)	12
Eco53kI	GAGCTC	1 cut(s)	10
EcoICRI	GAGCTC	1 cut(s)	10
EcoT38I	GRGCYC	1 cut(s)	12
FaiI	YATR	3 cut(s)	123, 209, 257
FaqI	GGGAC	1 cut(s)	24
FauI	CCCGC	1 cut(s)	147
FokI	GGATG	1 cut(s)	239
FriOI	GRGCYC	1 cut(s)	12
FspBI	CTAG	2 cut(s)	98, 143
GlaI	GCGC	1 cut(s)	36
HaeIII	GGCC	1 cut(s)	275
HgaI	GACGC	1 cut(s)	26
HhaI	GCGC	1 cut(s)	37
Hin6I	GCGC	1 cut(s)	35
HinP1I	GCGC	1 cut(s)	35
HincII	GTYRAC	1 cut(s)	159
HindII	GTYRAC	1 cut(s)	159
HphI	GGTGA	2 cut(s)	115, 128
Hpy166II	GTNNAC	1 cut(s)	159
Hpy188I	TCNGA	1 cut(s)	215
Hpy8I	GTNNAC	1 cut(s)	159
HpyAV	CCTTC	2 cut(s)	103, 265
HpyCH4III	ACNGT	1 cut(s)	132
HpyCH4IV	ACGT	2 cut(s)	24, 161
HpyCH4V	TGCA	2 cut(s)	4, 230
HpySE526I	ACGT	2 cut(s)	24, 161
HspAI	GCGC	1 cut(s)	35
LguI	GCTCTTC	1 cut(s)	17
LmnI	GCTCC	1 cut(s)	198
LpnPI	CCDG	4 cut(s)	30, 135, 204, 265
LweI	GCATC	1 cut(s)	217
MaeI	CTAG	2 cut(s)	98, 143
MaeII	ACGT	2 cut(s)	24, 161
MaeIII	GTNAC	2 cut(s)	25, 178
MboII	GAAGA	3 cut(s)	4, 118, 254
MfeI	CAATTG	1 cut(s)	90
MhlI	GDGCHC	1 cut(s)	12
MluCI	AATT	1 cut(s)	90
MnlI	CCTC	2 cut(s)	94, 213
MseI	TTAA	1 cut(s)	310
MunI	CAATTG	1 cut(s)	90
MvnI	CGCG	1 cut(s)	37
NlaIV	GGNNCC	1 cut(s)	194
NmuCI	GTSAC	2 cut(s)	25, 178
PciSI	GCTCTTC	1 cut(s)	17
Psp124BI	GAGCTC	1 cut(s)	12
PspN4I	GGNNCC	1 cut(s)	194
RsaI	GTAC	1 cut(s)	129
RsaNI	GTAC	1 cut(s)	128
SacI	GAGCTC	1 cut(s)	12
SapI	GCTCTTC	1 cut(s)	17
SaqAI	TTAA	1 cut(s)	310
SduI	GDGCHC	1 cut(s)	12
SetI	ASST	5 cut(s)	12, 27, 79, 105, 164
SfaNI	GCATC	1 cut(s)	217
Sse9I	AATT	1 cut(s)	90
SsiI	CCGC	2 cut(s)	140, 224
SspMI	CTAG	2 cut(s)	98, 143
SstI	GAGCTC	1 cut(s)	12
TaaI	ACNGT	1 cut(s)	132
TaiI	ACGT	2 cut(s)	27, 164
TasI	AATT	1 cut(s)	90
Tru1I	TTAA	1 cut(s)	310
Tru9I	TTAA	1 cut(s)	310
TseFI	GTSAC	2 cut(s)	25, 178
Tsp45I	GTSAC	2 cut(s)	25, 178
XcmI	CCANNNNNNNNNTGG	1 cut(s)	294
XspI	CTAG	2 cut(s)	98, 143

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.