AT5G55370

Membrane bound O-acyl transferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0000676
Physical Location & Seq
Reverse (-)
22445069 .. 22446133
1065 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G55370.1

Sequence Viewer

Length: 1032 bp
ATGGAAGAAGAGTTGAGAAACCTAATCAAGGTTTGGATCTCTGCCTTAATCTCCATATCTTACTGTTACTACATCTCATCAAAAATCTCCAAAGGTGTTCTTCGTCTCCTCTCTCTTCTTCCCATCTTCATCATCTTTCTTCTTCTTCCTCTCTTCTTCTCTTCTGTCCACTTCTGCGTCATCTCAGGTTTCTTCTTCACATGGCTCGCAAATTTCAAGCTCTTTCTCTTTGCTTTCGATCAAGAACCTTTAAGCCCACTTCCCTCAAATCTCACCCGTTTCTTCTGCTTCGCTTGTTTCCCCATCAAAATCAATAAAAACCCTTCTTCAAATCGAATCCACAACAAACCTATGTCTAAATGGGTCCTTGCTTTCAAACTTTTGATCTTTTCCTTCTTATTACATGTGTATAGAAACAACTATGATTCCGGTTTATCACGGTTCGCTTTCTTGGCTCTCTTTACCATTCATGTTTACCTCGAGGCAGAACTTATCTTAGTCTTCGTCGGTGCCTTGATGTCTATGCTTCTTGGTTGTGAAATGGAACCGGTATTCAATGATCCTTACTTAGCCACTTCTTTACAAGAGTTTTGGAGCCGTAGATGGAACCTCATGGTCCCAGCCGTACTCCGTCCAGCCGTCCACATACCGGTTCAGCGATTTTGTGCACCGTTACTCGGTCTACACCGGGCTTTTTACGCTGGAATGTTAGCCACGTTTATTGTCTCTGGTTTAATGCATGAGCTGATTTACTTTTATGTTATCCGCAAATCTCCAACTTGGGAAGTCACTTGCTTCTTTCTTTTGCATGGAGTTGTAACTTGCCTAGAGATAGCGATGAAGAGGATGCGGTGGCTTCCTACGCCACGTCGGGCGGTCTCGGGTCTTGCAATTACGGTGTTTTTGCTCGTTACAGCTGGTTGGTTGTTTTACCCTCAAATGTTAAGAAATGATGTGCATAAGAGAGTGATAAGTGAATGTTTGTTGGTTATTGACGTTGTTAAAAGGCACGTTGTCTGTATTTTAATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MBOAT_2

Protein Analysis

343

Amino Acids

39.81

Weight (kDa)

9.47

Isoelectric Point (pI)

56.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MBOAT_2 PF13813 182 - 268 8.9e-17 Membrane bound O-acyl transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 479
AccB1I GGYRCC 1 cut(s) 509
AccI GTMKAC 1 cut(s) 682
AciI CCGC 3 cut(s) 766, 850, 875
AclWI GGATC 2 cut(s) 44, 554
AcsI RAATTY 1 cut(s) 211
AfaI GTAC 1 cut(s) 627
AfiI CCNNNNNNNGG 3 cut(s) 28, 649, 677
AflIII ACRYGT 1 cut(s) 403
AgeI ACCGGT 2 cut(s) 547, 649
AgsI TTSAA 4 cut(s) 217, 330, 376, 556
AjiI CACGTC 1 cut(s) 869
AluBI AGCT 3 cut(s) 220, 745, 917
AluI AGCT 3 cut(s) 220, 745, 917
Alw21I GWGCWC 1 cut(s) 670
Alw26I GTCTC 3 cut(s) 110, 730, 883
Alw44I GTGCAC 1 cut(s) 666
AlwI GGATC 2 cut(s) 44, 554
Ama87I CYCGRG 2 cut(s) 479, 880
ApaLI GTGCAC 1 cut(s) 666
ApoI RAATTY 1 cut(s) 211
AsiGI ACCGGT 2 cut(s) 547, 649
AspS9I GGNCC 2 cut(s) 364, 616
AsuC2I CCSGG 1 cut(s) 689
AsuHPI GGTGA 1 cut(s) 265
AvaI CYCGRG 2 cut(s) 479, 880
AvaII GGWCC 2 cut(s) 364, 616
BaeGI GKGCMC 1 cut(s) 670
BanI GGYRCC 1 cut(s) 509
BbsI GAAGAC 1 cut(s) 493
Bbv12I GWGCWC 1 cut(s) 670
BccI CCATC 3 cut(s) 131, 311, 597
BceAI ACGGC 3 cut(s) 582, 608, 623
BcnI CCSGG 1 cut(s) 689
BcoDI GTCTC 3 cut(s) 110, 730, 883
BfaI CTAG 1 cut(s) 827
Bme1390I CCNGG 1 cut(s) 689
Bme18I GGWCC 2 cut(s) 364, 616
BmeT110I CYCGRG 2 cut(s) 479, 880
BmgBI CACGTC 1 cut(s) 869
BmgT120I GGNCC 2 cut(s) 364, 616
BmiI GGNNCC 6 cut(s) 365, 511, 546, 596, 608, 618
BmrFI CCNGG 1 cut(s) 689
BmsI GCATC 1 cut(s) 837
BpiI GAAGAC 1 cut(s) 493
BpuMI CCSGG 1 cut(s) 689
BsaI GGTCTC 1 cut(s) 883
BsaWI WCCGGW 3 cut(s) 428, 547, 649
Bsc4I CCNNNNNNNGG 3 cut(s) 28, 649, 677
Bse118I RCCGGY 2 cut(s) 547, 649
BseGI GGATG 1 cut(s) 852
BseLI CCNNNNNNNGG 3 cut(s) 28, 649, 677
BseMII CTCAG 1 cut(s) 198
BseRI GAGGAG 1 cut(s) 98
BseSI GKGCMC 1 cut(s) 670
BseYI CCCAGC 1 cut(s) 619
BshNI GGYRCC 1 cut(s) 509
BshTI ACCGGT 2 cut(s) 547, 649
BsiHKAI GWGCWC 1 cut(s) 670
BsiHKCI CYCGRG 2 cut(s) 479, 880
BsiSI CCGG 4 cut(s) 429, 548, 650, 688
BslFI GGGAC 1 cut(s) 602
BslI CCNNNNNNNGG 3 cut(s) 28, 649, 677
BsmAI GTCTC 3 cut(s) 110, 730, 883
BsmBI CGTCTC 1 cut(s) 110
BsmFI GGGAC 1 cut(s) 602
Bso31I GGTCTC 1 cut(s) 883
BsoBI CYCGRG 2 cut(s) 479, 880
Bsp1286I GDGCHC 1 cut(s) 670
Bsp143I GATC 4 cut(s) 36, 238, 384, 559
BspACI CCGC 3 cut(s) 766, 850, 875
BspCNI CTCAG 1 cut(s) 197
BspLI GGNNCC 6 cut(s) 365, 511, 546, 596, 608, 618
BspPI GGATC 2 cut(s) 44, 554
BspT107I GGYRCC 1 cut(s) 509
BspTNI GGTCTC 1 cut(s) 883
BsrFI RCCGGY 2 cut(s) 547, 649
BssAI RCCGGY 2 cut(s) 547, 649
BssMI GATC 4 cut(s) 36, 238, 384, 559
Bst4CI ACNGT 4 cut(s) 65, 441, 672, 898
Bst6I CTCTTC 5 cut(s) 3, 120, 158, 166, 836
BstC8I GCNNGC 1 cut(s) 207
BstDEI CTNAG 3 cut(s) 184, 496, 568
BstENI CCTNNNNNAGG 1 cut(s) 26
BstF5I GGATG 1 cut(s) 852
BstKTI GATC 4 cut(s) 39, 241, 387, 562
BstMAI GTCTC 3 cut(s) 110, 730, 883
BstMBI GATC 4 cut(s) 36, 238, 384, 559
BstMWI GCNNNNNNNGC 3 cut(s) 452, 698, 862
BstNSI RCATGY 1 cut(s) 407
BstSCI CCNGG 1 cut(s) 687
BstSLI GKGCMC 1 cut(s) 670
BstV2I GAAGAC 1 cut(s) 493
BstX2I RGATCY 1 cut(s) 36
BstYI RGATCY 1 cut(s) 36
BtgZI GCGATG 1 cut(s) 851
BtrI CACGTC 1 cut(s) 869
BtsCI GGATG 1 cut(s) 852
Cac8I GCNNGC 1 cut(s) 207
Cfr10I RCCGGY 2 cut(s) 547, 649
Cfr13I GGNCC 2 cut(s) 364, 616
CseI GACGC 1 cut(s) 166
Csp6I GTAC 1 cut(s) 626
CspAI ACCGGT 2 cut(s) 547, 649
CspCI CAANNNNNGTGG 2 cut(s) 703, 738
CviAII CATG 6 cut(s) 201, 404, 470, 613, 740, 809
CviQI GTAC 1 cut(s) 626
DdeI CTNAG 3 cut(s) 184, 496, 568
DpnI GATC 4 cut(s) 38, 240, 386, 561
DpnII GATC 4 cut(s) 36, 238, 384, 559
Eam1104I CTCTTC 5 cut(s) 3, 120, 158, 166, 836
EarI CTCTTC 5 cut(s) 3, 120, 158, 166, 836
Eco31I GGTCTC 1 cut(s) 883
Eco47I GGWCC 2 cut(s) 364, 616
Eco88I CYCGRG 2 cut(s) 479, 880
EcoNI CCTNNNNNAGG 1 cut(s) 26
EcoO109I RGGNCCY 1 cut(s) 364
EcoT22I ATGCAT 1 cut(s) 741
Esp3I CGTCTC 1 cut(s) 110
FaeI CATG 6 cut(s) 204, 407, 473, 616, 743, 812
FalI AAGNNNNNCTT 2 cut(s) 84, 116
FaqI GGGAC 1 cut(s) 602
FatI CATG 6 cut(s) 200, 403, 469, 612, 739, 808
FblI GTMKAC 1 cut(s) 682
FokI GGATG 1 cut(s) 859
FspBI CTAG 1 cut(s) 827
GsaI CCCAGC 1 cut(s) 623
HapII CCGG 4 cut(s) 429, 548, 650, 688
HgaI GACGC 1 cut(s) 166
Hin1II CATG 6 cut(s) 204, 407, 473, 616, 743, 812
HinfI GANTC 2 cut(s) 336, 425
HpaII CCGG 4 cut(s) 429, 548, 650, 688
HphI GGTGA 1 cut(s) 265
Hpy166II GTNNAC 5 cut(s) 169, 475, 643, 668, 683
Hpy188III TCNNGA 1 cut(s) 242
Hpy8I GTNNAC 5 cut(s) 169, 475, 643, 668, 683
Hpy99I CGWCG 2 cut(s) 509, 873
HpyAV CCTTC 2 cut(s) 333, 403
HpyCH4III ACNGT 4 cut(s) 65, 441, 672, 898
HpyCH4IV ACGT 4 cut(s) 716, 868, 996, 1011
HpyCH4V TGCA 5 cut(s) 668, 739, 808, 890, 958
HpyF10VI GCNNNNNNNGC 3 cut(s) 452, 698, 862
HpyF3I CTNAG 3 cut(s) 184, 496, 568
HpySE526I ACGT 4 cut(s) 716, 868, 996, 1011
Hsp92II CATG 6 cut(s) 204, 407, 473, 616, 743, 812
Kzo9I GATC 4 cut(s) 36, 238, 384, 559
LmnI GCTCC 1 cut(s) 594
LweI GCATC 1 cut(s) 837
MaeI CTAG 1 cut(s) 827
MaeII ACGT 4 cut(s) 716, 868, 996, 1011
MaeIII GTNAC 5 cut(s) 65, 672, 787, 817, 910
MalI GATC 4 cut(s) 38, 240, 386, 561
MboI GATC 4 cut(s) 36, 238, 384, 559
MflI RGATCY 1 cut(s) 36
MhlI GDGCHC 1 cut(s) 670
MluCI AATT 2 cut(s) 211, 891
MmeI TCCRAC 1 cut(s) 800
MnlI CCTC 8 cut(s) 119, 159, 274, 475, 488, 620, 837, 945
Mph1103I ATGCAT 1 cut(s) 741
MseI TTAA 6 cut(s) 47, 251, 734, 944, 1002, 1025
MspA1I CMGCKG 1 cut(s) 917
MspI CCGG 4 cut(s) 429, 548, 650, 688
MspR9I CCNGG 1 cut(s) 689
MwoI GCNNNNNNNGC 3 cut(s) 452, 698, 862
NciI CCSGG 1 cut(s) 689
NdeII GATC 4 cut(s) 36, 238, 384, 559
NlaIII CATG 6 cut(s) 204, 407, 473, 616, 743, 812
NlaIV GGNNCC 6 cut(s) 365, 511, 546, 596, 608, 618
NmuCI GTSAC 1 cut(s) 787
NsiI ATGCAT 1 cut(s) 741
NspI RCATGY 1 cut(s) 407
PaeR7I CTCGAG 1 cut(s) 479
PciI ACATGT 1 cut(s) 403
PfeI GAWTC 2 cut(s) 336, 425
PinAI ACCGGT 2 cut(s) 547, 649
PpuMI RGGWCCY 1 cut(s) 364
PscI ACATGT 1 cut(s) 403
Psp5II RGGWCCY 1 cut(s) 364
PspFI CCCAGC 1 cut(s) 619
PspN4I GGNNCC 6 cut(s) 365, 511, 546, 596, 608, 618
PspPI GGNCC 2 cut(s) 364, 616
PspPPI RGGWCCY 1 cut(s) 364
PspXI VCTCGAGB 1 cut(s) 479
PsuI RGATCY 1 cut(s) 36
PvuII CAGCTG 1 cut(s) 917
RsaI GTAC 1 cut(s) 627
RsaNI GTAC 1 cut(s) 626
SaqAI TTAA 6 cut(s) 47, 251, 734, 944, 1002, 1025
Sau3AI GATC 4 cut(s) 36, 238, 384, 559
Sau96I GGNCC 2 cut(s) 364, 616
ScrFI CCNGG 1 cut(s) 689
SduI GDGCHC 1 cut(s) 670
SfaNI GCATC 1 cut(s) 837
Sfr274I CTCGAG 1 cut(s) 479
SinI GGWCC 2 cut(s) 364, 616
SlaI CTCGAG 1 cut(s) 479
SmlI CTYRAG 1 cut(s) 479
SmoI CTYRAG 1 cut(s) 479
Sse9I AATT 2 cut(s) 211, 891
SsiI CCGC 3 cut(s) 766, 850, 875
SspMI CTAG 1 cut(s) 827
StyD4I CCNGG 1 cut(s) 687
TaaI ACNGT 4 cut(s) 65, 441, 672, 898
TaiI ACGT 4 cut(s) 719, 871, 999, 1014
TaqI TCGA 3 cut(s) 237, 334, 480
TaqII GACCGA 1 cut(s) 668
TasI AATT 2 cut(s) 211, 891
TfiI GAWTC 2 cut(s) 336, 425
Tru1I TTAA 6 cut(s) 47, 251, 734, 944, 1002, 1025
Tru9I TTAA 6 cut(s) 47, 251, 734, 944, 1002, 1025
TseFI GTSAC 1 cut(s) 787
Tsp45I GTSAC 1 cut(s) 787
TspDTI ATGAA 3 cut(s) 118, 458, 854
TspGWI ACGGA 1 cut(s) 620
VneI GTGCAC 1 cut(s) 666
VpaK11BI GGWCC 2 cut(s) 364, 616
XagI CCTNNNNNAGG 1 cut(s) 26
XapI RAATTY 1 cut(s) 211
XceI RCATGY 1 cut(s) 407
XhoI CTCGAG 1 cut(s) 479
XmiI GTMKAC 1 cut(s) 682
XspI CTAG 1 cut(s) 827
Zsp2I ATGCAT 1 cut(s) 741
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.