Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0000676

Physical Location & Seq

Genomic Coordinates Forward (+)

18653086 .. 18667112

Gene Structure 14027 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00397020.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGGAGGATGAGCTCAAGAACTTCATCAAGGTATGGATCACAACCATCTTATGTCTATCTTATTGCTATTACACAATCTCCAGATTAATCCCAAAGGGTCTGCTCAAGCTCATCTCTCTCCTCCCAGTCTTCTACCTTTTCATCACTGCCCCCCTAGCTCTCCATTCCTTCCATCTCTGTGGACCCACAATCGTCTTCCTAGTCTGGCTTGGCATCTCCAGGCTCCTTCTCTTCTCCTTTAACCTTGGCCCTCTATCACCACCCCCACCTTCATTCTTCCATTTCATCTCCATAGCTTGCCTCCCCATCAAAATCAAACAAGACCCACCTAGAAAAACACCCCCAAATCCCAAAACCACCCAAAATCCCAGAAAGCCAATTGGTCAAAGTGTCACAAAGGAGCTGCCAATTGTGGTAGCTATGGAGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MBOAT_2

Protein Analysis

143

Amino Acids

16.19

Weight (kDa)

9.58

Isoelectric Point (pI)

36.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000676)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34490 AT1G34500 AT1G34520 AT5G51420 AT5G55320 AT5G55330 AT5G55340 AT5G55350 AT5G55360 AT5G55370 AT5G55380
fragaria_vesca	FvH4_1g25220 FvH4_2g09840
malus_domestica	MD03G1191100.v1.1 MD03G1191200.v1.1 MD11G1208100.v1.1
prunus_persica	Prupe.4G227200_v2.0.a1 Prupe.4G227400_v2.0.a1
pyrus_communis	pycom03g14430 pycom11g18170 pycom11g18340
rosa_chinensis	RchiOBHm_Chr2g0123061 RchiOBHm_Chr2g0123071 RchiOBHm_Chr2g0123131 RchiOBHm_Chr6g0266191 RchiOBHm_Chr6g0266201 RchiOBHm_Chr6g0266251 RchiOBHm_Chr6g0266341
rosa_laevigata	RLG00000014105 RLG00000014107 RLG00000018729 RLG00000018730 RLG00000023150
rosa_multiflora	Rmu_sc0000168.1_g000022 Rmu_sc0002235.1_g000075 Rmu_sc0003605.1_g000042 Rmu_sc0005573.1_g000002 Rmu_sc0005573.1_g000004 Rmu_sc0009036.1_g000008 Rmu_sc0009589.1_g000002
rosa_roxburghii	Rroxscaffold_2G00120900 Rroxscaffold_2G00120910 Rroxscaffold_6G00397020 Rroxscaffold_7G00201410 Rroxscaffold_7G00201760 Rroxscaffold_7G00201820
rosa_rugosa	Rorug02G0243000 Rorug02G0243100 Rorug03G0217500 Rorug06G0024700
rosa_samantha	Rh2AG302700 Rh2AG302800 Rh2BG310300 Rh2BG310400 Rh2BG310600 Rh2CG289000 Rh2CG289200 Rh2DG326800 Rh3BG302500 Rh3BG302800 Rh3BG303100 Rh3BG303200 Rh6AG145400 Rh6AG148500 Rh6BG146000 Rh6CG142600 Rh6DG130500
rosa_wichuraiana	Rw0G004920 Rw0G004930 Rw2G024180 Rw2G024190 Rw3G023820 Rw3G023880 Rw6G012560 Rw6G012860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	44
AjnI	CCWGG	1 cut(s)	218
AluBI	AGCT	6 cut(s)	13, 109, 158, 296, 403, 419
AluI	AGCT	6 cut(s)	13, 109, 158, 296, 403, 419
Alw21I	GWGCWC	1 cut(s)	15
AlwI	GGATC	1 cut(s)	44
AoxI	GGCC	1 cut(s)	247
ApeKI	GCWGC	1 cut(s)	403
AseI	ATTAAT	1 cut(s)	86
AspS9I	GGNCC	2 cut(s)	182, 248
AsuHPI	GGTGA	1 cut(s)	249
AvaII	GGWCC	1 cut(s)	182
BanII	GRGCYC	1 cut(s)	15
BbsI	GAAGAC	2 cut(s)	121, 187
Bbv12I	GWGCWC	1 cut(s)	15
BbvI	GCAGC	1 cut(s)	390
BccI	CCATC	3 cut(s)	53, 180, 314
BciT130I	CCWGG	1 cut(s)	220
BfaI	CTAG	3 cut(s)	155, 200, 330
BisI	GCNGC	1 cut(s)	404
BlsI	GCNGC	1 cut(s)	405
Bme1390I	CCNGG	1 cut(s)	220
Bme18I	GGWCC	1 cut(s)	182
BmgT120I	GGNCC	2 cut(s)	182, 248
BmiI	GGNNCC	2 cut(s)	184, 224
BmrFI	CCNGG	1 cut(s)	220
BmrI	ACTGGG	1 cut(s)	119
BmsI	GCATC	1 cut(s)	222
BmuI	ACTGGG	1 cut(s)	119
BpiI	GAAGAC	2 cut(s)	121, 187
BpmI	CTGGAG	2 cut(s)	64, 202
BpuEI	CTTGAG	1 cut(s)	89
BsaJI	CCNNGG	1 cut(s)	244
BsaXI	ACNNNNNCTCC	2 cut(s)	62, 92
Bse1I	ACTGG	1 cut(s)	125
BseBI	CCWGG	1 cut(s)	220
BseDI	CCNNGG	1 cut(s)	244
BseGI	GGATG	1 cut(s)	13
BseNI	ACTGG	1 cut(s)	125
BseRI	GAGGAG	1 cut(s)	110
BseXI	GCAGC	1 cut(s)	390
BshFI	GGCC	1 cut(s)	249
BsiHKAI	GWGCWC	1 cut(s)	15
BsnI	GGCC	1 cut(s)	249
Bsp1286I	GDGCHC	1 cut(s)	15
Bsp143I	GATC	1 cut(s)	36
BspANI	GGCC	1 cut(s)	249
BspLI	GGNNCC	2 cut(s)	184, 224
BspPI	GGATC	1 cut(s)	44
BsrI	ACTGG	1 cut(s)	125
BssECI	CCNNGG	1 cut(s)	244
BssMI	GATC	1 cut(s)	36
BssT1I	CCWWGG	1 cut(s)	244
Bst2UI	CCWGG	1 cut(s)	220
Bst6I	CTCTTC	1 cut(s)	236
BstC8I	GCNNGC	1 cut(s)	298
BstF5I	GGATG	1 cut(s)	13
BstKTI	GATC	1 cut(s)	39
BstMBI	GATC	1 cut(s)	36
BstMWI	GCNNNNNNNGC	1 cut(s)	155
BstNI	CCWGG	1 cut(s)	220
BstSCI	CCNGG	1 cut(s)	218
BstV1I	GCAGC	1 cut(s)	390
BstV2I	GAAGAC	2 cut(s)	121, 187
BstXI	CCANNNNNNTGG	1 cut(s)	179
BsuRI	GGCC	1 cut(s)	249
BtsCI	GGATG	1 cut(s)	13
BtsI	GCAGTG	1 cut(s)	144
BtsIMutI	CAGTG	1 cut(s)	144
Cac8I	GCNNGC	1 cut(s)	298
Cfr13I	GGNCC	2 cut(s)	182, 248
DpnI	GATC	1 cut(s)	38
DpnII	GATC	1 cut(s)	36
Eam1104I	CTCTTC	1 cut(s)	236
EarI	CTCTTC	1 cut(s)	236
Ecl136II	GAGCTC	1 cut(s)	13
Eco130I	CCWWGG	1 cut(s)	244
Eco24I	GRGCYC	1 cut(s)	15
Eco47I	GGWCC	1 cut(s)	182
Eco53kI	GAGCTC	1 cut(s)	13
EcoICRI	GAGCTC	1 cut(s)	13
EcoRII	CCWGG	1 cut(s)	218
EcoT14I	CCWWGG	1 cut(s)	244
EcoT38I	GRGCYC	1 cut(s)	15
ErhI	CCWWGG	1 cut(s)	244
FaiI	YATR	4 cut(s)	34, 52, 293, 422
Fnu4HI	GCNGC	1 cut(s)	404
FokI	GGATG	1 cut(s)	20
FriOI	GRGCYC	1 cut(s)	15
Fsp4HI	GCNGC	1 cut(s)	404
FspBI	CTAG	3 cut(s)	155, 200, 330
GluI	GCNGC	1 cut(s)	404
GsuI	CTGGAG	2 cut(s)	64, 202
HaeIII	GGCC	1 cut(s)	249
HphI	GGTGA	1 cut(s)	249
Hpy166II	GTNNAC	1 cut(s)	182
Hpy188III	TCNNGA	2 cut(s)	16, 81
Hpy8I	GTNNAC	1 cut(s)	182
HpyAV	CCTTC	3 cut(s)	178, 236, 279
HpyF10VI	GCNNNNNNNGC	1 cut(s)	155
Kzo9I	GATC	1 cut(s)	36
LmnI	GCTCC	2 cut(s)	228, 400
LpnPI	CCDG	6 cut(s)	94, 138, 190, 205, 232, 382
Lsp1109I	GCAGC	1 cut(s)	390
LweI	GCATC	1 cut(s)	222
MaeI	CTAG	3 cut(s)	155, 200, 330
MaeIII	GTNAC	1 cut(s)	391
MalI	GATC	1 cut(s)	38
MboI	GATC	1 cut(s)	36
MboII	GAAGA	4 cut(s)	121, 187, 223, 268
MfeI	CAATTG	2 cut(s)	378, 408
MhlI	GDGCHC	1 cut(s)	15
MluCI	AATT	3 cut(s)	378, 408, 427
MnlI	CCTC	3 cut(s)	131, 261, 311
MseI	TTAA	2 cut(s)	86, 240
MslI	CAYNNNNRTG	1 cut(s)	177
MspR9I	CCNGG	1 cut(s)	220
MunI	CAATTG	2 cut(s)	378, 408
MvaI	CCWGG	1 cut(s)	220
MwoI	GCNNNNNNNGC	1 cut(s)	155
NdeII	GATC	1 cut(s)	36
NlaIV	GGNNCC	2 cut(s)	184, 224
NmuCI	GTSAC	1 cut(s)	391
PkrI	GCNGC	1 cut(s)	405
PshBI	ATTAAT	1 cut(s)	86
Psp124BI	GAGCTC	1 cut(s)	15
Psp6I	CCWGG	1 cut(s)	218
PspGI	CCWGG	1 cut(s)	218
PspN4I	GGNNCC	2 cut(s)	184, 224
PspPI	GGNCC	2 cut(s)	182, 248
RseI	CAYNNNNRTG	1 cut(s)	177
SacI	GAGCTC	1 cut(s)	15
SaqAI	TTAA	2 cut(s)	86, 240
SatI	GCNGC	1 cut(s)	404
Sau3AI	GATC	1 cut(s)	36
Sau96I	GGNCC	2 cut(s)	182, 248
ScrFI	CCNGG	1 cut(s)	220
SduI	GDGCHC	1 cut(s)	15
SfaNI	GCATC	1 cut(s)	222
SinI	GGWCC	1 cut(s)	182
SmiMI	CAYNNNNRTG	1 cut(s)	177
SmlI	CTYRAG	2 cut(s)	14, 104
SmoI	CTYRAG	2 cut(s)	14, 104
Sse9I	AATT	3 cut(s)	378, 408, 427
SspMI	CTAG	3 cut(s)	155, 200, 330
SstI	GAGCTC	1 cut(s)	15
StyD4I	CCNGG	1 cut(s)	218
StyI	CCWWGG	1 cut(s)	244
TasI	AATT	3 cut(s)	378, 408, 427
Tru1I	TTAA	2 cut(s)	86, 240
Tru9I	TTAA	2 cut(s)	86, 240
TscAI	CASTG	1 cut(s)	151
TseFI	GTSAC	1 cut(s)	391
TseI	GCWGC	1 cut(s)	403
Tsp45I	GTSAC	1 cut(s)	391
TspDTI	ATGAA	4 cut(s)	13, 130, 261, 274
TspRI	CASTG	1 cut(s)	151
VpaK11BI	GGWCC	1 cut(s)	182
VspI	ATTAAT	1 cut(s)	86
XspI	CTAG	3 cut(s)	155, 200, 330

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.