Rh2AG302800

Long-chain-alcohol

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000676
Physical Location & Seq
Forward (+)
37954516 .. 37955793
1278 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG302800.1

Sequence Viewer

Length: 801 bp
ATGGAGGATGAGCTCAAGAACTTCATCAAGGTATGGATCACAACCATCTTATGTCTATCTTATTGCCATTACATAGTCTCCAGATTAATCCCTAAGGGCCTGCTTAGGCTTATTTCTCTCCTCCCTGTCTTCTACTTCTTCATCACTACCCCCCTAACTCTCCATTCCTTCCATCTCTGTGGATCCACAACCTTCTTCCTAGTCTGGCTTGGCATCTTCAAGCTCCTCCTCTTCTCCTTTAACCTTGGCCCTCTATCACCACCCCCACCGTCACTCTTCCATTTCATCTCCATAGCTTGCCTCCCCATCAAAATCAAACAAGACCCACTTCGGAAAACACCCCCAAATCCCAAAACCACCCAAAAACGCAGAAACCCAATTGGTCAAAGTGTCACACAGTGGCTGCCAAACAAGTCAATTGTGGTGGCTGTGAAGGCATTGCTTTTGGGTATGATCATTCATACCTACGAGTACAGACCACATTTGCACCCTTATGTGATCTTAGCCTTGTACTGTTGCCACATGTACCTGGCTCTAGAATTAATCCTGGTCCTGAGCGCGACTCCGGCTCGAGCTCTTTTCAGATTTGAGATCGAGCCGCAGTCCAACGAGCCTTACCTCTCCACTTCGCTTCAAGACTTTTGGGGCCGTCGATGGAATCTAATGGTCACGAACATCCTGCGCCCAACGGTATACGATCCCACCCGGCGCGTGTGTGCGCGTGTAGTAGGGAAACGGTGGGCAAGGCTGCCAGCTGTGATGGCCACCTTTGCGGTGTCCGGGTTAATGCACGAGAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MBOAT_2

Protein Analysis

266

Amino Acids

30.66

Weight (kDa)

9.82

Isoelectric Point (pI)

60.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MBOAT_2 PF13813 199 - 265 3.5e-15 Membrane bound O-acyl transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 693
AccII CGCG 3 cut(s) 560, 711, 721
AciI CCGC 2 cut(s) 599, 773
AclWI GGATC 4 cut(s) 44, 177, 190, 692
AcoI YGGCCR 1 cut(s) 762
AdeI CACNNNGTG 1 cut(s) 399
AfaI GTAC 3 cut(s) 473, 512, 527
AflIII ACRYGT 1 cut(s) 522
AgsI TTSAA 2 cut(s) 220, 635
AjnI CCWGG 2 cut(s) 528, 546
AluBI AGCT 5 cut(s) 13, 223, 296, 575, 755
AluI AGCT 5 cut(s) 13, 223, 296, 575, 755
Alw21I GWGCWC 2 cut(s) 15, 577
Alw26I GTCTC 1 cut(s) 82
AlwI GGATC 4 cut(s) 44, 177, 190, 692
AlwNI CAGNNNCTG 1 cut(s) 403
Ama87I CYCGRG 1 cut(s) 570
AoxI GGCC 4 cut(s) 97, 247, 646, 762
ApeKI GCWGC 2 cut(s) 403, 748
AseI ATTAAT 2 cut(s) 86, 542
AspLEI GCGC 4 cut(s) 560, 684, 711, 721
AspS9I GGNCC 4 cut(s) 97, 248, 550, 646
AsuC2I CCSGG 2 cut(s) 706, 781
AsuHPI GGTGA 1 cut(s) 249
AvaI CYCGRG 1 cut(s) 570
AvaII GGWCC 1 cut(s) 550
AxyI CCTNAGG 1 cut(s) 93
BalI TGGCCA 1 cut(s) 764
BamHI GGATCC 1 cut(s) 182
BanII GRGCYC 2 cut(s) 15, 577
BauI CACGAG 1 cut(s) 791
BbsI GAAGAC 1 cut(s) 121
Bbv12I GWGCWC 2 cut(s) 15, 577
BbvI GCAGC 2 cut(s) 390, 735
BccI CCATC 5 cut(s) 53, 180, 314, 648, 754
BceAI ACGGC 1 cut(s) 633
BcgI CGANNNNNNTGC 2 cut(s) 661, 695
BciT130I CCWGG 2 cut(s) 530, 548
BclI TGATCA 1 cut(s) 453
BcnI CCSGG 2 cut(s) 706, 781
BcoDI GTCTC 1 cut(s) 82
BfaI CTAG 3 cut(s) 200, 536, 799
BisI GCNGC 3 cut(s) 404, 599, 749
BlsI GCNGC 3 cut(s) 405, 600, 750
Bme1390I CCNGG 4 cut(s) 530, 548, 706, 781
Bme18I GGWCC 1 cut(s) 550
BmeT110I CYCGRG 1 cut(s) 570
BmgT120I GGNCC 4 cut(s) 97, 248, 550, 646
BmiI GGNNCC 2 cut(s) 184, 647
BmrFI CCNGG 4 cut(s) 530, 548, 706, 781
BmsI GCATC 1 cut(s) 222
BpiI GAAGAC 1 cut(s) 121
BplI GAGNNNNNCTC 2 cut(s) 547, 579
BpmI CTGGAG 1 cut(s) 64
Bpu10I CCTNAGC 2 cut(s) 104, 554
BpuMI CCSGG 2 cut(s) 706, 781
BsaJI CCNNGG 1 cut(s) 244
BsaXI ACNNNNNCTCC 2 cut(s) 62, 92
Bse21I CCTNAGG 1 cut(s) 93
Bse3DI GCAATG 1 cut(s) 437
BseBI CCWGG 2 cut(s) 530, 548
BseDI CCNNGG 1 cut(s) 244
BseGI GGATG 2 cut(s) 13, 675
BseMI GCAATG 1 cut(s) 437
BseMII CTCAG 1 cut(s) 545
BseRI GAGGAG 3 cut(s) 110, 215, 218
BseXI GCAGC 2 cut(s) 390, 735
Bsh1236I CGCG 3 cut(s) 560, 711, 721
BshFI GGCC 4 cut(s) 99, 249, 648, 764
BsiHKAI GWGCWC 2 cut(s) 15, 577
BsiHKCI CYCGRG 1 cut(s) 570
BsiSI CCGG 3 cut(s) 566, 706, 780
BsmAI GTCTC 1 cut(s) 82
BsnI GGCC 4 cut(s) 99, 249, 648, 764
BsoBI CYCGRG 1 cut(s) 570
Bsp1286I GDGCHC 2 cut(s) 15, 577
Bsp143I GATC 6 cut(s) 36, 182, 453, 498, 591, 697
BspACI CCGC 2 cut(s) 599, 773
BspANI GGCC 4 cut(s) 99, 249, 648, 764
BspCNI CTCAG 1 cut(s) 546
BspFNI CGCG 3 cut(s) 560, 711, 721
BspLI GGNNCC 2 cut(s) 184, 647
BspPI GGATC 4 cut(s) 44, 177, 190, 692
BsrDI GCAATG 1 cut(s) 437
BssECI CCNNGG 1 cut(s) 244
BssMI GATC 6 cut(s) 36, 182, 453, 498, 591, 697
BssNAI GTATAC 1 cut(s) 694
BssSI CACGAG 1 cut(s) 791
BssT1I CCWWGG 1 cut(s) 244
Bst1107I GTATAC 1 cut(s) 694
Bst2BI CACGAG 1 cut(s) 791
Bst2UI CCWGG 2 cut(s) 530, 548
Bst4CI ACNGT 5 cut(s) 270, 399, 515, 691, 738
Bst6I CTCTTC 2 cut(s) 236, 281
BstC8I GCNNGC 3 cut(s) 101, 298, 753
BstDEI CTNAG 4 cut(s) 93, 104, 502, 554
BstF5I GGATG 2 cut(s) 13, 675
BstFNI CGCG 3 cut(s) 560, 711, 721
BstHHI GCGC 4 cut(s) 560, 684, 711, 721
BstKTI GATC 6 cut(s) 39, 185, 456, 501, 594, 700
BstMAI GTCTC 1 cut(s) 82
BstMBI GATC 6 cut(s) 36, 182, 453, 498, 591, 697
BstMWI GCNNNNNNNGC 4 cut(s) 434, 566, 761, 770
BstNI CCWGG 2 cut(s) 530, 548
BstNSI RCATGY 1 cut(s) 526
BstSCI CCNGG 4 cut(s) 528, 546, 704, 779
BstUI CGCG 3 cut(s) 560, 711, 721
BstV1I GCAGC 2 cut(s) 390, 735
BstV2I GAAGAC 1 cut(s) 121
BstX2I RGATCY 1 cut(s) 182
BstXI CCANNNNNNTGG 1 cut(s) 179
BstYI RGATCY 1 cut(s) 182
BstZ17I GTATAC 1 cut(s) 694
Bsu36I CCTNAGG 1 cut(s) 93
BsuRI GGCC 4 cut(s) 99, 249, 648, 764
BtsCI GGATG 2 cut(s) 13, 675
BtsIMutI CAGTG 1 cut(s) 404
Cac8I GCNNGC 3 cut(s) 101, 298, 753
CaiI CAGNNNCTG 1 cut(s) 403
CfoI GCGC 4 cut(s) 560, 684, 711, 721
Cfr13I GGNCC 4 cut(s) 97, 248, 550, 646
Csp6I GTAC 3 cut(s) 472, 511, 526
CspCI CAANNNNNGTGG 2 cut(s) 405, 440
CviAII CATG 1 cut(s) 523
CviQI GTAC 3 cut(s) 472, 511, 526
DdeI CTNAG 4 cut(s) 93, 104, 502, 554
DpnI GATC 6 cut(s) 38, 184, 455, 500, 593, 699
DpnII GATC 6 cut(s) 36, 182, 453, 498, 591, 697
DraIII CACNNNGTG 1 cut(s) 399
EaeI YGGCCR 1 cut(s) 762
Eam1104I CTCTTC 2 cut(s) 236, 281
EarI CTCTTC 2 cut(s) 236, 281
Ecl136II GAGCTC 2 cut(s) 13, 575
Eco130I CCWWGG 1 cut(s) 244
Eco24I GRGCYC 2 cut(s) 15, 577
Eco47I GGWCC 1 cut(s) 550
Eco53kI GAGCTC 2 cut(s) 13, 575
Eco81I CCTNAGG 1 cut(s) 93
Eco88I CYCGRG 1 cut(s) 570
EcoICRI GAGCTC 2 cut(s) 13, 575
EcoO109I RGGNCCY 1 cut(s) 97
EcoRII CCWGG 2 cut(s) 528, 546
EcoT14I CCWWGG 1 cut(s) 244
EcoT38I GRGCYC 2 cut(s) 15, 577
ErhI CCWWGG 1 cut(s) 244
FaeI CATG 1 cut(s) 526
FaiI YATR 9 cut(s) 34, 52, 74, 293, 452, 462, 495, 524, 694
FalI AAGNNNNNCTT 2 cut(s) 312, 344
FatI CATG 1 cut(s) 522
FbaI TGATCA 1 cut(s) 453
FblI GTMKAC 1 cut(s) 693
Fnu4HI GCNGC 3 cut(s) 404, 599, 749
FokI GGATG 2 cut(s) 20, 662
FriOI GRGCYC 2 cut(s) 15, 577
Fsp4HI GCNGC 3 cut(s) 404, 599, 749
FspBI CTAG 3 cut(s) 200, 536, 799
GlaI GCGC 4 cut(s) 559, 683, 710, 720
GluI GCNGC 3 cut(s) 404, 599, 749
GsuI CTGGAG 1 cut(s) 64
HaeIII GGCC 4 cut(s) 99, 249, 648, 764
HapII CCGG 3 cut(s) 566, 706, 780
HhaI GCGC 4 cut(s) 560, 684, 711, 721
Hin1II CATG 1 cut(s) 526
Hin6I GCGC 4 cut(s) 558, 682, 709, 719
HinP1I GCGC 4 cut(s) 558, 682, 709, 719
HinfI GANTC 2 cut(s) 562, 658
HpaII CCGG 3 cut(s) 566, 706, 780
HphI GGTGA 1 cut(s) 249
Hpy166II GTNNAC 1 cut(s) 694
Hpy188I TCNGA 2 cut(s) 333, 584
Hpy188III TCNNGA 6 cut(s) 16, 81, 536, 553, 635, 670
Hpy8I GTNNAC 1 cut(s) 694
Hpy99I CGWCG 1 cut(s) 654
HpyAV CCTTC 3 cut(s) 178, 202, 427
HpyCH4III ACNGT 5 cut(s) 270, 399, 515, 691, 738
HpyCH4V TGCA 2 cut(s) 487, 790
HpyF10VI GCNNNNNNNGC 4 cut(s) 434, 566, 761, 770
HpyF3I CTNAG 4 cut(s) 93, 104, 502, 554
Hsp92II CATG 1 cut(s) 526
HspAI GCGC 4 cut(s) 558, 682, 709, 719
Ksp22I TGATCA 1 cut(s) 453
Kzo9I GATC 6 cut(s) 36, 182, 453, 498, 591, 697
LmnI GCTCC 1 cut(s) 228
Lsp1109I GCAGC 2 cut(s) 390, 735
LweI GCATC 1 cut(s) 222
MaeI CTAG 3 cut(s) 200, 536, 799
MaeIII GTNAC 3 cut(s) 270, 391, 667
MalI GATC 6 cut(s) 38, 184, 455, 500, 593, 699
MboI GATC 6 cut(s) 36, 182, 453, 498, 591, 697
MboII GAAGA 6 cut(s) 121, 130, 187, 208, 223, 268
MfeI CAATTG 2 cut(s) 378, 417
MflI RGATCY 1 cut(s) 182
MhlI GDGCHC 2 cut(s) 15, 577
MlsI TGGCCA 1 cut(s) 764
MluCI AATT 3 cut(s) 378, 417, 539
MluNI TGGCCA 1 cut(s) 764
MlyI GAGTC 1 cut(s) 556
MmeI TCCRAC 1 cut(s) 630
MnlI CCTC 6 cut(s) 131, 236, 239, 261, 311, 629
Mox20I TGGCCA 1 cut(s) 764
MscI TGGCCA 1 cut(s) 764
MseI TTAA 4 cut(s) 86, 240, 542, 785
MslI CAYNNNNRTG 2 cut(s) 177, 492
Msp20I TGGCCA 1 cut(s) 764
MspA1I CMGCKG 1 cut(s) 755
MspI CCGG 3 cut(s) 566, 706, 780
MspR9I CCNGG 4 cut(s) 530, 548, 706, 781
MunI CAATTG 2 cut(s) 378, 417
MvaI CCWGG 2 cut(s) 530, 548
MvnI CGCG 3 cut(s) 560, 711, 721
MwoI GCNNNNNNNGC 4 cut(s) 434, 566, 761, 770
NciI CCSGG 2 cut(s) 706, 781
NdeII GATC 6 cut(s) 36, 182, 453, 498, 591, 697
NlaIII CATG 1 cut(s) 526
NlaIV GGNNCC 2 cut(s) 184, 647
NmuCI GTSAC 3 cut(s) 270, 391, 667
NspI RCATGY 1 cut(s) 526
PaeR7I CTCGAG 1 cut(s) 570
PciI ACATGT 1 cut(s) 522
PfeI GAWTC 1 cut(s) 658
PkrI GCNGC 3 cut(s) 405, 600, 750
PleI GAGTC 1 cut(s) 556
PpsI GAGTC 1 cut(s) 556
PscI ACATGT 1 cut(s) 522
PshBI ATTAAT 2 cut(s) 86, 542
Psp124BI GAGCTC 2 cut(s) 15, 577
Psp6I CCWGG 2 cut(s) 528, 546
PspGI CCWGG 2 cut(s) 528, 546
PspN4I GGNNCC 2 cut(s) 184, 647
PspPI GGNCC 4 cut(s) 97, 248, 550, 646
PspXI VCTCGAGB 1 cut(s) 570
PstNI CAGNNNCTG 1 cut(s) 403
PsuI RGATCY 1 cut(s) 182
PvuII CAGCTG 1 cut(s) 755
RsaI GTAC 3 cut(s) 473, 512, 527
RsaNI GTAC 3 cut(s) 472, 511, 526
RseI CAYNNNNRTG 2 cut(s) 177, 492
SacI GAGCTC 2 cut(s) 15, 577
SaqAI TTAA 4 cut(s) 86, 240, 542, 785
SatI GCNGC 3 cut(s) 404, 599, 749
Sau3AI GATC 6 cut(s) 36, 182, 453, 498, 591, 697
Sau96I GGNCC 4 cut(s) 97, 248, 550, 646
SchI GAGTC 1 cut(s) 556
ScrFI CCNGG 4 cut(s) 530, 548, 706, 781
SduI GDGCHC 2 cut(s) 15, 577
SfaNI GCATC 1 cut(s) 222
Sfr274I CTCGAG 1 cut(s) 570
SinI GGWCC 1 cut(s) 550
SlaI CTCGAG 1 cut(s) 570
SmiMI CAYNNNNRTG 2 cut(s) 177, 492
SmlI CTYRAG 2 cut(s) 14, 570
SmoI CTYRAG 2 cut(s) 14, 570
Sse9I AATT 3 cut(s) 378, 417, 539
SsiI CCGC 2 cut(s) 599, 773
SspMI CTAG 3 cut(s) 200, 536, 799
SstI GAGCTC 2 cut(s) 15, 577
StyD4I CCNGG 4 cut(s) 528, 546, 704, 779
StyI CCWWGG 1 cut(s) 244
TaaI ACNGT 5 cut(s) 270, 399, 515, 691, 738
TaqI TCGA 3 cut(s) 571, 594, 652
TasI AATT 3 cut(s) 378, 417, 539
TatI WGTACW 2 cut(s) 471, 510
TauI GCSGC 1 cut(s) 601
TfiI GAWTC 1 cut(s) 658
Tru1I TTAA 4 cut(s) 86, 240, 542, 785
Tru9I TTAA 4 cut(s) 86, 240, 542, 785
TscAI CASTG 1 cut(s) 404
TseFI GTSAC 3 cut(s) 270, 391, 667
TseI GCWGC 2 cut(s) 403, 748
Tsp45I GTSAC 3 cut(s) 270, 391, 667
TspDTI ATGAA 4 cut(s) 13, 130, 274, 449
TspRI CASTG 1 cut(s) 404
VpaK11BI GGWCC 1 cut(s) 550
VspI ATTAAT 2 cut(s) 86, 542
XbaI TCTAGA 1 cut(s) 535
XceI RCATGY 1 cut(s) 526
XhoI CTCGAG 1 cut(s) 570
XmiI GTMKAC 1 cut(s) 693
XspI CTAG 3 cut(s) 200, 536, 799
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.