Rroxscaffold_2G00120900

Long-chain-alcohol

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000676
Physical Location & Seq
Reverse (-)
53345165 .. 53345611
447 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00120900.1

Sequence Viewer

Length: 447 bp
ATGGAATCTAATGGTCACGAACATCCTGCGCCCAACGGTATACGATCCCACCCGGCGCGTGTGTGCGCGTGTAGTTGGGAAACGGTGGGCAGGGCTGCCGGCTGTGATGGCCACCTTTGCGGTGTCCGGGTTAATGCACGAGGTTATTTATTATTATCTCACCCGCGTGCAGCCCACGTGGGAAGTGACGTGGTTTTTGTGCTACATGGGGCTTGCGTGGTGGTTGAGGTGGAGGTCAAGAAGGCGGTTAACGGCAGGTGGAGGTTGCACCCGGTGGTTTCGGGGCCGCTGACGTTGGTGTTCTTGGCTGTGACCGGCAACTGGCTGTTCTTTCCTCAGTTGCTCAGGAATGGTGTTGATACAAACACTATAGGAGAGTATGCAATTATGGTGGACTTTGTCAAGGCTAACTTGCCTCATTTAAGTTATTGGCCCAACAAAAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MBOAT_2

Protein Analysis

148

Amino Acids

16.11

Weight (kDa)

8.71

Isoelectric Point (pI)

20.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 246
Acc36I ACCTGC 1 cut(s) 246
AccI GTMKAC 1 cut(s) 40
AccII CGCG 3 cut(s) 58, 68, 166
AciI CCGC 4 cut(s) 120, 164, 245, 287
AclWI GGATC 1 cut(s) 39
AcoI YGGCCR 1 cut(s) 109
AcvI CACGTG 1 cut(s) 178
AdeI CACNNNGTG 1 cut(s) 274
AfiI CCNNNNNNNGG 1 cut(s) 321
AjiI CACGTC 1 cut(s) 190
AleI CACNNNNGTG 1 cut(s) 165
AluBI AGCT 1 cut(s) 444
AluI AGCT 1 cut(s) 444
AlwI GGATC 1 cut(s) 39
AoxI GGCC 3 cut(s) 109, 284, 431
ApeKI GCWGC 2 cut(s) 95, 170
ArsI GACNNNNNNTTYG 2 cut(s) 179, 211
AspLEI GCGC 3 cut(s) 31, 58, 68
AspS9I GGNCC 2 cut(s) 284, 432
AsuC2I CCSGG 3 cut(s) 53, 128, 272
AsuHPI GGTGA 1 cut(s) 152
BalI TGGCCA 1 cut(s) 111
BauI CACGAG 1 cut(s) 138
BbrPI CACGTG 1 cut(s) 178
BbvI GCAGC 2 cut(s) 82, 182
BccI CCATC 1 cut(s) 101
BceAI ACGGC 1 cut(s) 268
BcgI CGANNNNNNTGC 2 cut(s) 8, 42
BcnI CCSGG 3 cut(s) 53, 128, 272
BfmI CTRYAG 1 cut(s) 369
BfuAI ACCTGC 1 cut(s) 246
BisI GCNGC 3 cut(s) 96, 171, 287
BlsI GCNGC 3 cut(s) 97, 172, 288
Bme1390I CCNGG 3 cut(s) 53, 128, 272
BmgBI CACGTC 1 cut(s) 190
BmgT120I GGNCC 2 cut(s) 284, 432
BmiI GGNNCC 1 cut(s) 285
BmrFI CCNGG 3 cut(s) 53, 128, 272
Bpu10I CCTNAGC 1 cut(s) 344
BpuMI CCSGG 3 cut(s) 53, 128, 272
BsaAI YACGTR 1 cut(s) 178
Bsc4I CCNNNNNNNGG 1 cut(s) 321
Bse118I RCCGGY 2 cut(s) 98, 314
Bse1I ACTGG 1 cut(s) 326
BseGI GGATG 1 cut(s) 22
BseLI CCNNNNNNNGG 1 cut(s) 321
BseMII CTCAG 2 cut(s) 350, 358
BseNI ACTGG 1 cut(s) 326
BseXI GCAGC 2 cut(s) 82, 182
BsgI GTGCAG 1 cut(s) 189
Bsh1236I CGCG 3 cut(s) 58, 68, 166
BshFI GGCC 3 cut(s) 111, 286, 433
BsiSI CCGG 5 cut(s) 53, 99, 127, 272, 315
BslI CCNNNNNNNGG 1 cut(s) 321
BsnI GGCC 3 cut(s) 111, 286, 433
Bsp143I GATC 1 cut(s) 44
BspACI CCGC 4 cut(s) 120, 164, 245, 287
BspANI GGCC 3 cut(s) 111, 286, 433
BspCNI CTCAG 2 cut(s) 349, 357
BspFNI CGCG 3 cut(s) 58, 68, 166
BspLI GGNNCC 1 cut(s) 285
BspMI ACCTGC 1 cut(s) 246
BspPI GGATC 1 cut(s) 39
BsrFI RCCGGY 2 cut(s) 98, 314
BsrI ACTGG 1 cut(s) 326
BssAI RCCGGY 2 cut(s) 98, 314
BssMI GATC 1 cut(s) 44
BssNAI GTATAC 1 cut(s) 41
BssSI CACGAG 1 cut(s) 138
Bst1107I GTATAC 1 cut(s) 41
Bst2BI CACGAG 1 cut(s) 138
Bst4CI ACNGT 2 cut(s) 38, 85
BstBAI YACGTR 1 cut(s) 178
BstC8I GCNNGC 3 cut(s) 100, 168, 214
BstDEI CTNAG 2 cut(s) 336, 344
BstF5I GGATG 1 cut(s) 22
BstFNI CGCG 3 cut(s) 58, 68, 166
BstHHI GCGC 3 cut(s) 31, 58, 68
BstKTI GATC 1 cut(s) 47
BstMBI GATC 1 cut(s) 44
BstMWI GCNNNNNNNGC 2 cut(s) 108, 117
BstSCI CCNGG 3 cut(s) 51, 126, 270
BstSFI CTRYAG 1 cut(s) 369
BstUI CGCG 3 cut(s) 58, 68, 166
BstV1I GCAGC 2 cut(s) 82, 182
BstZ17I GTATAC 1 cut(s) 41
BsuRI GGCC 3 cut(s) 111, 286, 433
BtrI CACGTC 1 cut(s) 190
BtsCI GGATG 1 cut(s) 22
BveI ACCTGC 1 cut(s) 246
Cac8I GCNNGC 3 cut(s) 100, 168, 214
CfoI GCGC 3 cut(s) 31, 58, 68
Cfr10I RCCGGY 2 cut(s) 98, 314
Cfr13I GGNCC 2 cut(s) 284, 432
CspCI CAANNNNNGTGG 2 cut(s) 372, 407
CviAII CATG 1 cut(s) 206
DdeI CTNAG 2 cut(s) 336, 344
DpnI GATC 1 cut(s) 46
DpnII GATC 1 cut(s) 44
DraIII CACNNNGTG 1 cut(s) 274
EaeI YGGCCR 1 cut(s) 109
Eco72I CACGTG 1 cut(s) 178
FaeI CATG 1 cut(s) 209
FaiI YATR 5 cut(s) 41, 207, 371, 381, 389
FalI AAGNNNNNCTT 2 cut(s) 395, 427
FatI CATG 1 cut(s) 205
FauI CCCGC 1 cut(s) 171
FblI GTMKAC 1 cut(s) 40
Fnu4HI GCNGC 3 cut(s) 96, 171, 287
FokI GGATG 1 cut(s) 9
Fsp4HI GCNGC 3 cut(s) 96, 171, 287
GlaI GCGC 3 cut(s) 30, 57, 67
GluI GCNGC 3 cut(s) 96, 171, 287
HaeIII GGCC 3 cut(s) 111, 286, 433
HapII CCGG 5 cut(s) 53, 99, 127, 272, 315
HhaI GCGC 3 cut(s) 31, 58, 68
Hin1II CATG 1 cut(s) 209
Hin6I GCGC 3 cut(s) 29, 56, 66
HinP1I GCGC 3 cut(s) 29, 56, 66
HincII GTYRAC 1 cut(s) 250
HindII GTYRAC 1 cut(s) 250
HinfI GANTC 1 cut(s) 5
HpaI GTTAAC 1 cut(s) 250
HpaII CCGG 5 cut(s) 53, 99, 127, 272, 315
HphI GGTGA 1 cut(s) 152
Hpy166II GTNNAC 3 cut(s) 41, 250, 394
Hpy188III TCNNGA 3 cut(s) 17, 238, 346
Hpy8I GTNNAC 3 cut(s) 41, 250, 394
HpyAV CCTTC 1 cut(s) 235
HpyCH4III ACNGT 2 cut(s) 38, 85
HpyCH4IV ACGT 3 cut(s) 177, 189, 293
HpyCH4V TGCA 4 cut(s) 137, 170, 268, 383
HpyF10VI GCNNNNNNNGC 2 cut(s) 108, 117
HpyF3I CTNAG 2 cut(s) 336, 344
HpySE526I ACGT 3 cut(s) 177, 189, 293
Hsp92II CATG 1 cut(s) 209
HspAI GCGC 3 cut(s) 29, 56, 66
KroI GCCGGC 1 cut(s) 98
KroNI GCCGGC 1 cut(s) 100
KspAI GTTAAC 1 cut(s) 250
Kzo9I GATC 1 cut(s) 44
Lsp1109I GCAGC 2 cut(s) 82, 182
MaeII ACGT 3 cut(s) 177, 189, 293
MaeIII GTNAC 3 cut(s) 14, 185, 310
MalI GATC 1 cut(s) 46
MboI GATC 1 cut(s) 44
MlsI TGGCCA 1 cut(s) 111
MluCI AATT 1 cut(s) 384
MluNI TGGCCA 1 cut(s) 111
MnlI CCTC 6 cut(s) 134, 220, 226, 255, 345, 426
Mox20I TGGCCA 1 cut(s) 111
MroNI GCCGGC 1 cut(s) 98
MscI TGGCCA 1 cut(s) 111
MseI TTAA 3 cut(s) 132, 249, 422
MslI CAYNNNNRTG 1 cut(s) 165
Msp20I TGGCCA 1 cut(s) 111
MspA1I CMGCKG 1 cut(s) 289
MspI CCGG 5 cut(s) 53, 99, 127, 272, 315
MspR9I CCNGG 3 cut(s) 53, 128, 272
MvnI CGCG 3 cut(s) 58, 68, 166
MwoI GCNNNNNNNGC 2 cut(s) 108, 117
NaeI GCCGGC 1 cut(s) 100
NciI CCSGG 3 cut(s) 53, 128, 272
NdeII GATC 1 cut(s) 44
NgoMIV GCCGGC 1 cut(s) 98
NlaIII CATG 1 cut(s) 209
NlaIV GGNNCC 1 cut(s) 285
NmuCI GTSAC 3 cut(s) 14, 185, 310
OliI CACNNNNGTG 1 cut(s) 165
PaqCI CACCTGC 1 cut(s) 246
PdiI GCCGGC 1 cut(s) 100
PfeI GAWTC 1 cut(s) 5
PflFI GACNNNGTC 1 cut(s) 398
PkrI GCNGC 3 cut(s) 97, 172, 288
PmaCI CACGTG 1 cut(s) 178
PmlI CACGTG 1 cut(s) 178
Ppu21I YACGTR 1 cut(s) 178
PspCI CACGTG 1 cut(s) 178
PspN4I GGNNCC 1 cut(s) 285
PspPI GGNCC 2 cut(s) 284, 432
PsyI GACNNNGTC 1 cut(s) 398
RseI CAYNNNNRTG 1 cut(s) 165
SaqAI TTAA 3 cut(s) 132, 249, 422
SatI GCNGC 3 cut(s) 96, 171, 287
Sau3AI GATC 1 cut(s) 44
Sau96I GGNCC 2 cut(s) 284, 432
ScrFI CCNGG 3 cut(s) 53, 128, 272
SfcI CTRYAG 1 cut(s) 369
SmiMI CAYNNNNRTG 1 cut(s) 165
Sse9I AATT 1 cut(s) 384
SsiI CCGC 4 cut(s) 120, 164, 245, 287
StyD4I CCNGG 3 cut(s) 51, 126, 270
TaaI ACNGT 2 cut(s) 38, 85
TaiI ACGT 3 cut(s) 180, 192, 296
TasI AATT 1 cut(s) 384
TauI GCSGC 1 cut(s) 289
TfiI GAWTC 1 cut(s) 5
Tru1I TTAA 3 cut(s) 132, 249, 422
Tru9I TTAA 3 cut(s) 132, 249, 422
TseFI GTSAC 3 cut(s) 14, 185, 310
TseI GCWGC 2 cut(s) 95, 170
Tsp45I GTSAC 3 cut(s) 14, 185, 310
Tth111I GACNNNGTC 1 cut(s) 398
XmiI GTMKAC 1 cut(s) 40
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.