RchiOBHm_Chr6g0266251

Long-chain-alcohol

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000676
Physical Location & Seq
Forward (+)
22456443 .. 22457683
1241 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ23879

Sequence Viewer

Length: 1098 bp
ATGGATGGTGATGAAATCAAAAATTTCATCAAGGTATGGATCATAGCCATTGCATCTCAATGTTATTGTTATTACGTAGCAGCAAGAATCCCAACAAAGAGCATGATGAGGCTCATCTCTCTCCTCCCAATCTTGTACCTACTTCTCATGCTCCCCTTGAACCTCCACTCGATCCATCTTGGTGCCCCCTCAGCCTTCTTTCTTGGTTGTCTTGCCATCTTCAAACTCCTCCTCTTCTCCTTTGACTCTGGTCCTCTATCACCGCCCCCAAAAGGACTTCTCCCCTTCATTTCAATAGCTCTTCTTCCCATCAACATTAAGAGACTCATCCCCAAAAGGCCTCGCTACGGTTACACTATCACAAAATTGGTGCCAAACAAGACCGCTTTGTGGGCATTGAAGGTCTTGCTTTTGGGTGAAATAATTCATGCACGCAAGGATTATAGACAGAATTTACATCCCTATCTACTCACATCCTTGTCCCTTTCCCACCTCTACCTTGGTCTAGAAATAGGCTTTGCTCTGAGTGTAGCCTTGCCTCAAGCCATGTTTGGGTTCGAACTCGAGCCACACTTCAACGAGCCTTACTTTTCCACTTCTCTTCAGGACTTTTGGGGCCGTAGATGGAACCTTGCAGTCTCAAACACTCTACGCCCCCTTGTATACCATCCCATAAGGCATATATCTACAGGCAAGAGCGAAGCCATCTACGAGCCAATAGATACCTCAAAACCTCCGCGGGCTCCAGTTCTGCCGGTCATCTCTGCTTTCACCATCTCGGGTCTAATGCACGAGCTCTTCTTTTACTACGTCACTCGTGCGCATCCCACGGGGGAAATGATGTGCTTCTTTGTCCTACAAGGTGTGTGCTTGGCAATTGAACTAGAGGTGAAGAAGGCGTTGGCTCATAGGGTACGGTTTCACCCGCTAGTTTCAGGGCTGTTGACGTTGGTGTTTTTGATTGTCACTACTGATTGGCTTCTTTTCCCTCACATAATCAGAACTGGTGCGGATGCAAAGAGTTTAGAAGAGTGTGTCAGTATGGTGGATTTTGTGAAGGCCAACATTTCCCCATTGTATTATTGGCAGAAGAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MBOAT_2

Protein Analysis

365

Amino Acids

41.41

Weight (kDa)

9.32

Isoelectric Point (pI)

40.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MBOAT_2 PF13813 189 - 285 2.5e-16 Membrane bound O-acyl transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 822
AccB1I GGYRCC 2 cut(s) 182, 370
AccI GTMKAC 1 cut(s) 663
AccII CGCG 1 cut(s) 739
AciI CCGC 6 cut(s) 263, 384, 737, 739, 926, 1010
AclWI GGATC 2 cut(s) 47, 166
AcsI RAATTY 2 cut(s) 22, 451
AcuI CTGAAG 1 cut(s) 587
AfaI GTAC 2 cut(s) 137, 915
AfiI CCNNNNNNNGG 4 cut(s) 272, 347, 390, 552
AgsI TTSAA 6 cut(s) 160, 223, 294, 400, 577, 881
AjuI GAANNNNNNNTTGG 2 cut(s) 884, 916
AluBI AGCT 2 cut(s) 299, 796
AluI AGCT 2 cut(s) 299, 796
Alw21I GWGCWC 1 cut(s) 798
Alw26I GTCTC 2 cut(s) 316, 643
AlwI GGATC 2 cut(s) 47, 166
Ama87I CYCGRG 2 cut(s) 563, 778
AoxI GGCC 3 cut(s) 338, 616, 1059
ApeKI GCWGC 1 cut(s) 80
ApoI RAATTY 2 cut(s) 22, 451
Asp700I GAANNNNTTC 1 cut(s) 423
AspLEI GCGC 1 cut(s) 823
AspS9I GGNCC 2 cut(s) 251, 616
AsuHPI GGTGA 6 cut(s) 20, 252, 428, 763, 901, 914
AsuII TTCGAA 1 cut(s) 558
AvaI CYCGRG 2 cut(s) 563, 778
AvaII GGWCC 1 cut(s) 251
BaeGI GKGCMC 1 cut(s) 187
BanI GGYRCC 2 cut(s) 182, 370
BanII GRGCYC 2 cut(s) 745, 798
BauI CACGAG 2 cut(s) 791, 816
Bbv12I GWGCWC 1 cut(s) 798
BbvCI CCTCAGC 1 cut(s) 190
BbvI GCAGC 1 cut(s) 92
BccI CCATC 7 cut(s) 183, 224, 317, 618, 675, 713, 782
BceAI ACGGC 1 cut(s) 603
BcoDI GTCTC 2 cut(s) 316, 643
BfaI CTAG 3 cut(s) 506, 884, 929
BfmI CTRYAG 1 cut(s) 687
BisI GCNGC 1 cut(s) 81
BlsI GCNGC 1 cut(s) 82
Bme18I GGWCC 1 cut(s) 251
BmeT110I CYCGRG 2 cut(s) 563, 778
BmgT120I GGNCC 2 cut(s) 251, 616
BmiI GGNNCC 5 cut(s) 184, 372, 617, 629, 744
BmsI GCATC 3 cut(s) 62, 832, 1003
BoxI GACNNNNGTC 1 cut(s) 249
BpmI CTGGAG 1 cut(s) 729
Bpu10I CCTNAGC 1 cut(s) 190
Bpu14I TTCGAA 1 cut(s) 558
BpuEI CTTGAG 1 cut(s) 525
BsaAI YACGTR 1 cut(s) 76
BsaJI CCNNGG 3 cut(s) 499, 737, 828
Bsc4I CCNNNNNNNGG 4 cut(s) 272, 347, 390, 552
Bse118I RCCGGY 1 cut(s) 754
Bse1I ACTGG 2 cut(s) 746, 1009
Bse3DI GCAATG 1 cut(s) 48
BseDI CCNNGG 3 cut(s) 499, 737, 828
BseGI GGATG 7 cut(s) 10, 327, 457, 473, 667, 823, 1018
BseLI CCNNNNNNNGG 4 cut(s) 272, 347, 390, 552
BseMI GCAATG 1 cut(s) 48
BseMII CTCAG 2 cut(s) 204, 515
BseNI ACTGG 2 cut(s) 746, 1009
BseRI GAGGAG 3 cut(s) 113, 218, 221
BseSI GKGCMC 1 cut(s) 187
BseXI GCAGC 1 cut(s) 92
Bsh1236I CGCG 1 cut(s) 739
BshFI GGCC 3 cut(s) 340, 618, 1061
BshNI GGYRCC 2 cut(s) 182, 370
BsiHKAI GWGCWC 1 cut(s) 798
BsiHKCI CYCGRG 2 cut(s) 563, 778
BsiSI CCGG 1 cut(s) 755
BslFI GGGAC 1 cut(s) 466
BslI CCNNNNNNNGG 4 cut(s) 272, 347, 390, 552
BsmAI GTCTC 2 cut(s) 316, 643
BsmFI GGGAC 1 cut(s) 466
BsnI GGCC 3 cut(s) 340, 618, 1061
BsoBI CYCGRG 2 cut(s) 563, 778
Bsp119I TTCGAA 1 cut(s) 558
Bsp1286I GDGCHC 3 cut(s) 187, 745, 798
Bsp143I GATC 2 cut(s) 39, 171
BspACI CCGC 6 cut(s) 263, 384, 737, 739, 926, 1010
BspANI GGCC 3 cut(s) 340, 618, 1061
BspCNI CTCAG 2 cut(s) 203, 516
BspFNI CGCG 1 cut(s) 739
BspLI GGNNCC 5 cut(s) 184, 372, 617, 629, 744
BspPI GGATC 2 cut(s) 47, 166
BspQI GCTCTTC 2 cut(s) 306, 803
BspT104I TTCGAA 1 cut(s) 558
BspT107I GGYRCC 2 cut(s) 182, 370
BsrDI GCAATG 1 cut(s) 48
BsrFI RCCGGY 1 cut(s) 754
BsrI ACTGG 2 cut(s) 746, 1009
BssAI RCCGGY 1 cut(s) 754
BssECI CCNNGG 3 cut(s) 499, 737, 828
BssMI GATC 2 cut(s) 39, 171
BssNAI GTATAC 1 cut(s) 664
BssSI CACGAG 2 cut(s) 791, 816
BssT1I CCWWGG 1 cut(s) 499
Bst1107I GTATAC 1 cut(s) 664
Bst2BI CACGAG 2 cut(s) 791, 816
Bst4CI ACNGT 2 cut(s) 350, 918
Bst6I CTCTTC 6 cut(s) 239, 306, 606, 803, 1023, 1085
BstBAI YACGTR 1 cut(s) 76
BstBI TTCGAA 1 cut(s) 558
BstC8I GCNNGC 2 cut(s) 433, 741
BstDEI CTNAG 2 cut(s) 190, 524
BstDSI CCRYGG 2 cut(s) 737, 828
BstF5I GGATG 7 cut(s) 10, 327, 457, 473, 667, 823, 1018
BstFNI CGCG 1 cut(s) 739
BstHHI GCGC 1 cut(s) 823
BstKTI GATC 2 cut(s) 42, 174
BstMAI GTCTC 2 cut(s) 316, 643
BstMBI GATC 2 cut(s) 39, 171
BstMWI GCNNNNNNNGC 2 cut(s) 191, 392
BstPAI GACNNNNGTC 1 cut(s) 249
BstSFI CTRYAG 1 cut(s) 687
BstSLI GKGCMC 1 cut(s) 187
BstSNI TACGTA 1 cut(s) 76
BstUI CGCG 1 cut(s) 739
BstV1I GCAGC 1 cut(s) 92
BstZ17I GTATAC 1 cut(s) 664
BsuRI GGCC 3 cut(s) 340, 618, 1061
BtgI CCRYGG 2 cut(s) 737, 828
BtsCI GGATG 7 cut(s) 10, 327, 457, 473, 667, 823, 1018
Cac8I GCNNGC 2 cut(s) 433, 741
CfoI GCGC 1 cut(s) 823
Cfr10I RCCGGY 1 cut(s) 754
Cfr13I GGNCC 2 cut(s) 251, 616
Cfr42I CCGCGG 1 cut(s) 740
Csp6I GTAC 2 cut(s) 136, 914
CviAII CATG 4 cut(s) 103, 148, 428, 547
CviQI GTAC 2 cut(s) 136, 914
DdeI CTNAG 2 cut(s) 190, 524
DpnI GATC 2 cut(s) 41, 173
DpnII GATC 2 cut(s) 39, 171
Eam1104I CTCTTC 6 cut(s) 239, 306, 606, 803, 1023, 1085
EarI CTCTTC 6 cut(s) 239, 306, 606, 803, 1023, 1085
Ecl136II GAGCTC 1 cut(s) 796
Eco105I TACGTA 1 cut(s) 76
Eco130I CCWWGG 1 cut(s) 499
Eco147I AGGCCT 1 cut(s) 340
Eco24I GRGCYC 2 cut(s) 745, 798
Eco47I GGWCC 1 cut(s) 251
Eco53kI GAGCTC 1 cut(s) 796
Eco57I CTGAAG 1 cut(s) 587
Eco88I CYCGRG 2 cut(s) 563, 778
EcoICRI GAGCTC 1 cut(s) 796
EcoT14I CCWWGG 1 cut(s) 499
EcoT38I GRGCYC 2 cut(s) 745, 798
ErhI CCWWGG 1 cut(s) 499
FaeI CATG 4 cut(s) 106, 151, 431, 550
FaqI GGGAC 1 cut(s) 466
FatI CATG 4 cut(s) 102, 147, 427, 546
FauI CCCGC 2 cut(s) 732, 933
FblI GTMKAC 1 cut(s) 663
Fnu4HI GCNGC 1 cut(s) 81
FokI GGATG 7 cut(s) 17, 314, 444, 460, 654, 810, 1025
FriOI GRGCYC 2 cut(s) 745, 798
Fsp4HI GCNGC 1 cut(s) 81
FspAI RTGCGCAY 1 cut(s) 822
FspBI CTAG 3 cut(s) 506, 884, 929
FspI TGCGCA 1 cut(s) 822
GlaI GCGC 1 cut(s) 822
GluI GCNGC 1 cut(s) 81
GsuI CTGGAG 1 cut(s) 729
HaeIII GGCC 3 cut(s) 340, 618, 1061
HapII CCGG 1 cut(s) 755
HhaI GCGC 1 cut(s) 823
Hin1II CATG 4 cut(s) 106, 151, 431, 550
Hin6I GCGC 1 cut(s) 821
HinP1I GCGC 1 cut(s) 821
HincII GTYRAC 1 cut(s) 945
HindII GTYRAC 1 cut(s) 945
HinfI GANTC 3 cut(s) 87, 245, 324
HpaII CCGG 1 cut(s) 755
HphI GGTGA 6 cut(s) 20, 252, 428, 763, 901, 914
Hpy166II GTNNAC 2 cut(s) 664, 945
Hpy188I TCNGA 2 cut(s) 525, 1001
Hpy188III TCNNGA 2 cut(s) 506, 605
Hpy8I GTNNAC 2 cut(s) 664, 945
HpyAV CCTTC 5 cut(s) 205, 295, 394, 889, 1051
HpyCH4III ACNGT 2 cut(s) 350, 918
HpyCH4IV ACGT 3 cut(s) 75, 810, 947
HpyCH4V TGCA 5 cut(s) 53, 431, 635, 790, 1016
HpyF10VI GCNNNNNNNGC 2 cut(s) 191, 392
HpyF3I CTNAG 2 cut(s) 190, 524
HpySE526I ACGT 3 cut(s) 75, 810, 947
Hsp92II CATG 4 cut(s) 106, 151, 431, 550
HspAI GCGC 1 cut(s) 821
KspI CCGCGG 1 cut(s) 740
Kzo9I GATC 2 cut(s) 39, 171
LguI GCTCTTC 2 cut(s) 306, 803
LmnI GCTCC 2 cut(s) 156, 748
LpnPI CCDG 7 cut(s) 234, 590, 675, 759, 768, 921, 990
Lsp1109I GCAGC 1 cut(s) 92
LweI GCATC 3 cut(s) 62, 832, 1003
MaeI CTAG 3 cut(s) 506, 884, 929
MaeII ACGT 3 cut(s) 75, 810, 947
MaeIII GTNAC 3 cut(s) 350, 811, 964
MalI GATC 2 cut(s) 41, 173
MboI GATC 2 cut(s) 39, 171
MboII GAAGA 8 cut(s) 211, 226, 293, 296, 593, 790, 904, 1040
MfeI CAATTG 1 cut(s) 876
MhlI GDGCHC 3 cut(s) 187, 745, 798
MluCI AATT 5 cut(s) 22, 365, 423, 451, 876
MlyI GAGTC 2 cut(s) 239, 318
MroXI GAANNNNTTC 1 cut(s) 423
MseI TTAA 1 cut(s) 318
MslI CAYNNNNRTG 2 cut(s) 58, 180
MspA1I CMGCKG 1 cut(s) 739
MspI CCGG 1 cut(s) 755
MunI CAATTG 1 cut(s) 876
MvnI CGCG 1 cut(s) 739
MwoI GCNNNNNNNGC 2 cut(s) 191, 392
NdeII GATC 2 cut(s) 39, 171
NlaIII CATG 4 cut(s) 106, 151, 431, 550
NlaIV GGNNCC 5 cut(s) 184, 372, 617, 629, 744
NmuCI GTSAC 2 cut(s) 811, 964
NsbI TGCGCA 1 cut(s) 822
NspV TTCGAA 1 cut(s) 558
PaeR7I CTCGAG 1 cut(s) 563
PceI AGGCCT 1 cut(s) 340
PciSI GCTCTTC 2 cut(s) 306, 803
PdmI GAANNNNTTC 1 cut(s) 423
PfeI GAWTC 1 cut(s) 87
PkrI GCNGC 1 cut(s) 82
PleI GAGTC 2 cut(s) 239, 318
PpsI GAGTC 2 cut(s) 239, 318
Ppu21I YACGTR 1 cut(s) 76
PshAI GACNNNNGTC 1 cut(s) 249
Psp124BI GAGCTC 1 cut(s) 798
PspN4I GGNNCC 5 cut(s) 184, 372, 617, 629, 744
PspPI GGNCC 2 cut(s) 251, 616
PspXI VCTCGAGB 1 cut(s) 563
RsaI GTAC 2 cut(s) 137, 915
RsaNI GTAC 2 cut(s) 136, 914
RseI CAYNNNNRTG 2 cut(s) 58, 180
SacI GAGCTC 1 cut(s) 798
SacII CCGCGG 1 cut(s) 740
SapI GCTCTTC 2 cut(s) 306, 803
SaqAI TTAA 1 cut(s) 318
SatI GCNGC 1 cut(s) 81
Sau3AI GATC 2 cut(s) 39, 171
Sau96I GGNCC 2 cut(s) 251, 616
SchI GAGTC 2 cut(s) 239, 318
SduI GDGCHC 3 cut(s) 187, 745, 798
SfaNI GCATC 3 cut(s) 62, 832, 1003
SfcI CTRYAG 1 cut(s) 687
Sfr274I CTCGAG 1 cut(s) 563
Sfr303I CCGCGG 1 cut(s) 740
SfuI TTCGAA 1 cut(s) 558
SgrBI CCGCGG 1 cut(s) 740
SinI GGWCC 1 cut(s) 251
SlaI CTCGAG 1 cut(s) 563
SmiMI CAYNNNNRTG 2 cut(s) 58, 180
SmlI CTYRAG 2 cut(s) 540, 563
SmoI CTYRAG 2 cut(s) 540, 563
SnaBI TACGTA 1 cut(s) 76
Sse9I AATT 5 cut(s) 22, 365, 423, 451, 876
SseBI AGGCCT 1 cut(s) 340
SsiI CCGC 6 cut(s) 263, 384, 737, 739, 926, 1010
SspMI CTAG 3 cut(s) 506, 884, 929
SstI GAGCTC 1 cut(s) 798
StuI AGGCCT 1 cut(s) 340
StyI CCWWGG 1 cut(s) 499
TaaI ACNGT 2 cut(s) 350, 918
TaiI ACGT 3 cut(s) 78, 813, 950
TaqI TCGA 3 cut(s) 170, 558, 564
TasI AATT 5 cut(s) 22, 365, 423, 451, 876
TfiI GAWTC 1 cut(s) 87
Tru1I TTAA 1 cut(s) 318
Tru9I TTAA 1 cut(s) 318
TseFI GTSAC 2 cut(s) 811, 964
TseI GCWGC 1 cut(s) 80
Tsp45I GTSAC 2 cut(s) 811, 964
TspDTI ATGAA 4 cut(s) 16, 27, 277, 416
VpaK11BI GGWCC 1 cut(s) 251
XapI RAATTY 2 cut(s) 22, 451
XbaI TCTAGA 1 cut(s) 505
XcmI CCANNNNNNNNNTGG 2 cut(s) 497, 1080
XhoI CTCGAG 1 cut(s) 563
XmiI GTMKAC 1 cut(s) 663
XmnI GAANNNNTTC 1 cut(s) 423
XspI CTAG 3 cut(s) 506, 884, 929
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.