Rmu_sc0005573.1_g000004

Long-chain-alcohol

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005573.1
OG0000676
Physical Location & Seq
Forward (+)
16007 .. 17230
1224 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005573.1_g000004.1.cds

Sequence Viewer

Length: 1224 bp
atggaggatgagctcaagaacttcatcaaggtatggatcactaccatcttatgtctatcttattgccattacatagtctccagattaatccctaagggcctgcttaggcttatttctctcctccctgtcttctacttcttcatcaccacccccctaactctccattccttccatctctgtggatccacaaccttcttcctagtctggcttggcatcttcaagctcctcctcttctcctttaaccttggccctctatcaccacccccaccgtcactcttccatttcatctccatagcttgcctccccatcaaaatcaaacccccaaatcccaaaaccacccaaaaacccagaaacccaattggtcaaagtgtcacaaagtggctgccaaacaagtcaattgtggtggctgtgaaggcattgcttttgggtatgatcattcatacctacgagtacagaccacatttgcacccttatgtgatcttagccttgtactgttgccacatgtacctggctctagaattaatcctggtcctgagcgcgactccggctcgagctcttttcagatttgagatcgagccgcagtccaatgagccttacctctccacttcgcttcaagacttttggggccgtcgatggaatctaatggtcacgaacatcctgcgcccaactgtatacgatcccacccggcgcgtgtgtgcgcgtgtagttgggaaacggtgggcaaggctgccggctgtgatggccacctttgcggtgtccgggttaatgcacgaggttatttattattatctcacccgcgtgcagcccacgtgggaagtgacgtggttttttgtgctacatggggcttgcgtggtggttgaggtggaggtcaagaaggcggttaccggcaggtggaggttgcacccggtggtttcgcggccgttgacgttggtgttcttggctgtcaccggcaactggctgttctttcctcagttgctcaggaatggtgttgatataaacgttgaggtggaggtgaagaaggcggtcaccggcaggtggagattgcacccggtggtttcggggccgttgacgttggtgttcttggctgtcaccggcaactggctgttctttcctcagttgctcaggaatggtgttgatataaagactataggagagtatgcaattatggtggactttgtcaaggctaacttgcctcatttaagttattggcccaacaaaagctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MBOAT_2

Protein Analysis

407

Amino Acids

46.75

Weight (kDa)

9.79

Isoelectric Point (pI)

44.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 879, 1023
Acc36I ACCTGC 2 cut(s) 879, 1023
AccI GTMKAC 1 cut(s) 672
AccII CGCG 5 cut(s) 539, 690, 700, 798, 916
AciI CCGC 6 cut(s) 578, 752, 796, 878, 916, 1022
AclI AACGTT 1 cut(s) 999
AclWI GGATC 4 cut(s) 44, 177, 190, 671
AcoI YGGCCR 2 cut(s) 741, 917
AcvI CACGTG 1 cut(s) 810
AdeI CACNNNGTG 3 cut(s) 378, 907, 1051
AfaI GTAC 3 cut(s) 452, 491, 506
AfiI CCNNNNNNNGG 4 cut(s) 891, 954, 1035, 1098
AflIII ACRYGT 1 cut(s) 501
AgsI TTSAA 2 cut(s) 220, 614
AjiI CACGTC 1 cut(s) 822
AjnI CCWGG 2 cut(s) 507, 525
AleI CACNNNNGTG 1 cut(s) 797
AluBI AGCT 5 cut(s) 13, 223, 296, 554, 1221
AluI AGCT 5 cut(s) 13, 223, 296, 554, 1221
Alw21I GWGCWC 2 cut(s) 15, 556
Alw26I GTCTC 1 cut(s) 82
AlwI GGATC 4 cut(s) 44, 177, 190, 671
Ama87I CYCGRG 1 cut(s) 549
AoxI GGCC 7 cut(s) 97, 247, 625, 741, 917, 1061, 1208
ApeKI GCWGC 3 cut(s) 382, 727, 802
AseI ATTAAT 2 cut(s) 86, 521
AspLEI GCGC 4 cut(s) 539, 663, 690, 700
AspS9I GGNCC 6 cut(s) 97, 248, 529, 625, 1061, 1209
AsuC2I CCSGG 4 cut(s) 685, 760, 905, 1049
AsuHPI GGTGA 7 cut(s) 136, 249, 784, 937, 1018, 1024, 1081
AvaI CYCGRG 1 cut(s) 549
AvaII GGWCC 1 cut(s) 529
AxyI CCTNAGG 1 cut(s) 93
BalI TGGCCA 1 cut(s) 743
BamHI GGATCC 1 cut(s) 182
BanII GRGCYC 2 cut(s) 15, 556
BauI CACGAG 1 cut(s) 770
BbrPI CACGTG 1 cut(s) 810
BbsI GAAGAC 1 cut(s) 121
Bbv12I GWGCWC 2 cut(s) 15, 556
BbvI GCAGC 3 cut(s) 369, 714, 814
BccI CCATC 5 cut(s) 53, 180, 314, 627, 733
BceAI ACGGC 3 cut(s) 612, 904, 1048
BcgI CGANNNNNNTGC 2 cut(s) 640, 674
BciT130I CCWGG 2 cut(s) 509, 527
BclI TGATCA 1 cut(s) 432
BcnI CCSGG 4 cut(s) 685, 760, 905, 1049
BcoDI GTCTC 1 cut(s) 82
BfaI CTAG 2 cut(s) 200, 515
BfmI CTRYAG 1 cut(s) 1146
BfuAI ACCTGC 2 cut(s) 879, 1023
BisI GCNGC 5 cut(s) 383, 578, 728, 803, 917
BlsI GCNGC 5 cut(s) 384, 579, 729, 804, 918
Bme1390I CCNGG 6 cut(s) 509, 527, 685, 760, 905, 1049
Bme18I GGWCC 1 cut(s) 529
BmeT110I CYCGRG 1 cut(s) 549
BmgBI CACGTC 1 cut(s) 822
BmgT120I GGNCC 6 cut(s) 97, 248, 529, 625, 1061, 1209
BmiI GGNNCC 3 cut(s) 184, 626, 1062
BmrFI CCNGG 6 cut(s) 509, 527, 685, 760, 905, 1049
BmsI GCATC 1 cut(s) 222
BpiI GAAGAC 1 cut(s) 121
BplI GAGNNNNNCTC 2 cut(s) 526, 558
BpmI CTGGAG 1 cut(s) 64
Bpu10I CCTNAGC 4 cut(s) 104, 533, 977, 1121
BpuMI CCSGG 4 cut(s) 685, 760, 905, 1049
BsaAI YACGTR 1 cut(s) 810
BsaJI CCNNGG 1 cut(s) 244
BsaXI ACNNNNNCTCC 2 cut(s) 62, 92
Bsc4I CCNNNNNNNGG 4 cut(s) 891, 954, 1035, 1098
Bse118I RCCGGY 5 cut(s) 730, 884, 947, 1028, 1091
Bse1I ACTGG 2 cut(s) 959, 1103
Bse21I CCTNAGG 1 cut(s) 93
Bse3DI GCAATG 1 cut(s) 416
BseBI CCWGG 2 cut(s) 509, 527
BseDI CCNNGG 1 cut(s) 244
BseGI GGATG 2 cut(s) 13, 654
BseLI CCNNNNNNNGG 4 cut(s) 891, 954, 1035, 1098
BseMI GCAATG 1 cut(s) 416
BseMII CTCAG 5 cut(s) 524, 983, 991, 1127, 1135
BseNI ACTGG 2 cut(s) 959, 1103
BseRI GAGGAG 3 cut(s) 110, 215, 218
BseX3I CGGCCG 1 cut(s) 917
BseXI GCAGC 3 cut(s) 369, 714, 814
BsgI GTGCAG 1 cut(s) 821
Bsh1236I CGCG 5 cut(s) 539, 690, 700, 798, 916
Bsh1285I CGRYCG 1 cut(s) 920
BshFI GGCC 7 cut(s) 99, 249, 627, 743, 919, 1063, 1210
BsiEI CGRYCG 1 cut(s) 920
BsiHKAI GWGCWC 2 cut(s) 15, 556
BsiHKCI CYCGRG 1 cut(s) 549
BslI CCNNNNNNNGG 4 cut(s) 891, 954, 1035, 1098
BsmAI GTCTC 1 cut(s) 82
BsnI GGCC 7 cut(s) 99, 249, 627, 743, 919, 1063, 1210
BsoBI CYCGRG 1 cut(s) 549
Bsp1286I GDGCHC 2 cut(s) 15, 556
Bsp143I GATC 6 cut(s) 36, 182, 432, 477, 570, 676
BspACI CCGC 6 cut(s) 578, 752, 796, 878, 916, 1022
BspANI GGCC 7 cut(s) 99, 249, 627, 743, 919, 1063, 1210
BspCNI CTCAG 5 cut(s) 525, 982, 990, 1126, 1134
BspFNI CGCG 5 cut(s) 539, 690, 700, 798, 916
BspLI GGNNCC 3 cut(s) 184, 626, 1062
BspMI ACCTGC 2 cut(s) 879, 1023
BspPI GGATC 4 cut(s) 44, 177, 190, 671
BsrDI GCAATG 1 cut(s) 416
BsrFI RCCGGY 5 cut(s) 730, 884, 947, 1028, 1091
BsrI ACTGG 2 cut(s) 959, 1103
BssAI RCCGGY 5 cut(s) 730, 884, 947, 1028, 1091
BssECI CCNNGG 1 cut(s) 244
BssMI GATC 6 cut(s) 36, 182, 432, 477, 570, 676
BssNAI GTATAC 1 cut(s) 673
BssSI CACGAG 1 cut(s) 770
BssT1I CCWWGG 1 cut(s) 244
Bst1107I GTATAC 1 cut(s) 673
Bst2BI CACGAG 1 cut(s) 770
Bst2UI CCWGG 2 cut(s) 509, 527
Bst4CI ACNGT 4 cut(s) 270, 494, 670, 717
Bst6I CTCTTC 2 cut(s) 236, 281
BstBAI YACGTR 1 cut(s) 810
BstC8I GCNNGC 5 cut(s) 101, 298, 732, 800, 847
BstDEI CTNAG 8 cut(s) 93, 104, 481, 533, 969, 977, 1113, 1121
BstEII GGTNACC 2 cut(s) 880, 1024
BstF5I GGATG 2 cut(s) 13, 654
BstFNI CGCG 5 cut(s) 539, 690, 700, 798, 916
BstHHI GCGC 4 cut(s) 539, 663, 690, 700
BstKTI GATC 6 cut(s) 39, 185, 435, 480, 573, 679
BstMAI GTCTC 1 cut(s) 82
BstMBI GATC 6 cut(s) 36, 182, 432, 477, 570, 676
BstMCI CGRYCG 1 cut(s) 920
BstMWI GCNNNNNNNGC 4 cut(s) 413, 545, 740, 749
BstNI CCWGG 2 cut(s) 509, 527
BstNSI RCATGY 1 cut(s) 505
BstPI GGTNACC 2 cut(s) 880, 1024
BstSCI CCNGG 6 cut(s) 507, 525, 683, 758, 903, 1047
BstSFI CTRYAG 1 cut(s) 1146
BstUI CGCG 5 cut(s) 539, 690, 700, 798, 916
BstV1I GCAGC 3 cut(s) 369, 714, 814
BstV2I GAAGAC 1 cut(s) 121
BstX2I RGATCY 1 cut(s) 182
BstXI CCANNNNNNTGG 1 cut(s) 179
BstYI RGATCY 1 cut(s) 182
BstZ17I GTATAC 1 cut(s) 673
BstZI CGGCCG 1 cut(s) 917
Bsu36I CCTNAGG 1 cut(s) 93
BsuRI GGCC 7 cut(s) 99, 249, 627, 743, 919, 1063, 1210
BtrI CACGTC 1 cut(s) 822
BtsCI GGATG 2 cut(s) 13, 654
BveI ACCTGC 2 cut(s) 879, 1023
Cac8I GCNNGC 5 cut(s) 101, 298, 732, 800, 847
CfoI GCGC 4 cut(s) 539, 663, 690, 700
Cfr10I RCCGGY 5 cut(s) 730, 884, 947, 1028, 1091
Cfr13I GGNCC 6 cut(s) 97, 248, 529, 625, 1061, 1209
Csp6I GTAC 3 cut(s) 451, 490, 505
CspCI CAANNNNNGTGG 4 cut(s) 384, 419, 1149, 1184
CviAII CATG 2 cut(s) 502, 839
CviQI GTAC 3 cut(s) 451, 490, 505
DdeI CTNAG 8 cut(s) 93, 104, 481, 533, 969, 977, 1113, 1121
DpnI GATC 6 cut(s) 38, 184, 434, 479, 572, 678
DpnII GATC 6 cut(s) 36, 182, 432, 477, 570, 676
DraIII CACNNNGTG 3 cut(s) 378, 907, 1051
EaeI YGGCCR 2 cut(s) 741, 917
EagI CGGCCG 1 cut(s) 917
Eam1104I CTCTTC 2 cut(s) 236, 281
EarI CTCTTC 2 cut(s) 236, 281
Ecl136II GAGCTC 2 cut(s) 13, 554
EclXI CGGCCG 1 cut(s) 917
Eco130I CCWWGG 1 cut(s) 244
Eco24I GRGCYC 2 cut(s) 15, 556
Eco47I GGWCC 1 cut(s) 529
Eco52I CGGCCG 1 cut(s) 917
Eco53kI GAGCTC 2 cut(s) 13, 554
Eco72I CACGTG 1 cut(s) 810
Eco81I CCTNAGG 1 cut(s) 93
Eco88I CYCGRG 1 cut(s) 549
Eco91I GGTNACC 2 cut(s) 880, 1024
EcoICRI GAGCTC 2 cut(s) 13, 554
EcoO109I RGGNCCY 1 cut(s) 97
EcoO65I GGTNACC 2 cut(s) 880, 1024
EcoRII CCWGG 2 cut(s) 507, 525
EcoT14I CCWWGG 1 cut(s) 244
EcoT38I GRGCYC 2 cut(s) 15, 556
ErhI CCWWGG 1 cut(s) 244
FaeI CATG 2 cut(s) 505, 842
FalI AAGNNNNNCTT 2 cut(s) 1172, 1204
FatI CATG 2 cut(s) 501, 838
FauI CCCGC 1 cut(s) 803
FbaI TGATCA 1 cut(s) 432
FblI GTMKAC 1 cut(s) 672
Fnu4HI GCNGC 5 cut(s) 383, 578, 728, 803, 917
FokI GGATG 2 cut(s) 20, 641
FriOI GRGCYC 2 cut(s) 15, 556
Fsp4HI GCNGC 5 cut(s) 383, 578, 728, 803, 917
FspBI CTAG 2 cut(s) 200, 515
GlaI GCGC 4 cut(s) 538, 662, 689, 699
GluI GCNGC 5 cut(s) 383, 578, 728, 803, 917
GsuI CTGGAG 1 cut(s) 64
HaeIII GGCC 7 cut(s) 99, 249, 627, 743, 919, 1063, 1210
HhaI GCGC 4 cut(s) 539, 663, 690, 700
Hin1II CATG 2 cut(s) 505, 842
Hin6I GCGC 4 cut(s) 537, 661, 688, 698
HinP1I GCGC 4 cut(s) 537, 661, 688, 698
HincII GTYRAC 2 cut(s) 924, 1068
HindII GTYRAC 2 cut(s) 924, 1068
HinfI GANTC 2 cut(s) 541, 637
HphI GGTGA 7 cut(s) 136, 249, 784, 937, 1018, 1024, 1081
Hpy166II GTNNAC 4 cut(s) 673, 924, 1068, 1171
Hpy188I TCNGA 1 cut(s) 563
Hpy188III TCNNGA 9 cut(s) 16, 81, 515, 532, 614, 649, 871, 979, 1123
Hpy8I GTNNAC 4 cut(s) 673, 924, 1068, 1171
Hpy99I CGWCG 1 cut(s) 633
HpyAV CCTTC 5 cut(s) 178, 202, 406, 868, 1012
HpyCH4III ACNGT 4 cut(s) 270, 494, 670, 717
HpyCH4IV ACGT 5 cut(s) 809, 821, 926, 999, 1070
HpyCH4V TGCA 6 cut(s) 466, 769, 802, 901, 1045, 1160
HpyF10VI GCNNNNNNNGC 4 cut(s) 413, 545, 740, 749
HpyF3I CTNAG 8 cut(s) 93, 104, 481, 533, 969, 977, 1113, 1121
HpySE526I ACGT 5 cut(s) 809, 821, 926, 999, 1070
Hsp92II CATG 2 cut(s) 505, 842
HspAI GCGC 4 cut(s) 537, 661, 688, 698
KroI GCCGGC 1 cut(s) 730
KroNI GCCGGC 1 cut(s) 732
Ksp22I TGATCA 1 cut(s) 432
Kzo9I GATC 6 cut(s) 36, 182, 432, 477, 570, 676
LmnI GCTCC 1 cut(s) 228
Lsp1109I GCAGC 3 cut(s) 369, 714, 814
LweI GCATC 1 cut(s) 222
MaeI CTAG 2 cut(s) 200, 515
MaeII ACGT 5 cut(s) 809, 821, 926, 999, 1070
MaeIII GTNAC 8 cut(s) 270, 370, 646, 817, 880, 943, 1024, 1087
MalI GATC 6 cut(s) 38, 184, 434, 479, 572, 678
MboI GATC 6 cut(s) 36, 182, 432, 477, 570, 676
MboII GAAGA 7 cut(s) 121, 130, 187, 208, 223, 268, 1027
MfeI CAATTG 2 cut(s) 357, 396
MflI RGATCY 1 cut(s) 182
MhlI GDGCHC 2 cut(s) 15, 556
MlsI TGGCCA 1 cut(s) 743
MluCI AATT 4 cut(s) 357, 396, 518, 1161
MluNI TGGCCA 1 cut(s) 743
MlyI GAGTC 1 cut(s) 535
Mox20I TGGCCA 1 cut(s) 743
MroNI GCCGGC 1 cut(s) 730
MscI TGGCCA 1 cut(s) 743
MseI TTAA 5 cut(s) 86, 240, 521, 764, 1199
MslI CAYNNNNRTG 3 cut(s) 177, 471, 797
Msp20I TGGCCA 1 cut(s) 743
MspR9I CCNGG 6 cut(s) 509, 527, 685, 760, 905, 1049
MunI CAATTG 2 cut(s) 357, 396
MvaI CCWGG 2 cut(s) 509, 527
MvnI CGCG 5 cut(s) 539, 690, 700, 798, 916
MwoI GCNNNNNNNGC 4 cut(s) 413, 545, 740, 749
NaeI GCCGGC 1 cut(s) 732
NciI CCSGG 4 cut(s) 685, 760, 905, 1049
NdeII GATC 6 cut(s) 36, 182, 432, 477, 570, 676
NgoMIV GCCGGC 1 cut(s) 730
NlaIII CATG 2 cut(s) 505, 842
NlaIV GGNNCC 3 cut(s) 184, 626, 1062
NmuCI GTSAC 7 cut(s) 270, 370, 646, 817, 943, 1024, 1087
NspI RCATGY 1 cut(s) 505
OliI CACNNNNGTG 1 cut(s) 797
PaeR7I CTCGAG 1 cut(s) 549
PaqCI CACCTGC 2 cut(s) 879, 1023
PciI ACATGT 1 cut(s) 501
PdiI GCCGGC 1 cut(s) 732
PfeI GAWTC 1 cut(s) 637
PflFI GACNNNGTC 1 cut(s) 1175
PkrI GCNGC 5 cut(s) 384, 579, 729, 804, 918
PleI GAGTC 1 cut(s) 535
PmaCI CACGTG 1 cut(s) 810
PmlI CACGTG 1 cut(s) 810
PpsI GAGTC 1 cut(s) 535
Ppu21I YACGTR 1 cut(s) 810
PscI ACATGT 1 cut(s) 501
PshBI ATTAAT 2 cut(s) 86, 521
Psp124BI GAGCTC 2 cut(s) 15, 556
Psp1406I AACGTT 1 cut(s) 999
Psp6I CCWGG 2 cut(s) 507, 525
PspCI CACGTG 1 cut(s) 810
PspEI GGTNACC 2 cut(s) 880, 1024
PspGI CCWGG 2 cut(s) 507, 525
PspN4I GGNNCC 3 cut(s) 184, 626, 1062
PspPI GGNCC 6 cut(s) 97, 248, 529, 625, 1061, 1209
PspXI VCTCGAGB 1 cut(s) 549
PsuI RGATCY 1 cut(s) 182
PsyI GACNNNGTC 1 cut(s) 1175
RsaI GTAC 3 cut(s) 452, 491, 506
RsaNI GTAC 3 cut(s) 451, 490, 505
RseI CAYNNNNRTG 3 cut(s) 177, 471, 797
SacI GAGCTC 2 cut(s) 15, 556
SaqAI TTAA 5 cut(s) 86, 240, 521, 764, 1199
SatI GCNGC 5 cut(s) 383, 578, 728, 803, 917
Sau3AI GATC 6 cut(s) 36, 182, 432, 477, 570, 676
Sau96I GGNCC 6 cut(s) 97, 248, 529, 625, 1061, 1209
SchI GAGTC 1 cut(s) 535
ScrFI CCNGG 6 cut(s) 509, 527, 685, 760, 905, 1049
SduI GDGCHC 2 cut(s) 15, 556
SfaNI GCATC 1 cut(s) 222
SfcI CTRYAG 1 cut(s) 1146
Sfr274I CTCGAG 1 cut(s) 549
SinI GGWCC 1 cut(s) 529
SlaI CTCGAG 1 cut(s) 549
SmiMI CAYNNNNRTG 3 cut(s) 177, 471, 797
SmlI CTYRAG 2 cut(s) 14, 549
SmoI CTYRAG 2 cut(s) 14, 549
Sse9I AATT 4 cut(s) 357, 396, 518, 1161
SsiI CCGC 6 cut(s) 578, 752, 796, 878, 916, 1022
SspMI CTAG 2 cut(s) 200, 515
SstI GAGCTC 2 cut(s) 15, 556
StyD4I CCNGG 6 cut(s) 507, 525, 683, 758, 903, 1047
StyI CCWWGG 1 cut(s) 244
TaaI ACNGT 4 cut(s) 270, 494, 670, 717
TaiI ACGT 5 cut(s) 812, 824, 929, 1002, 1073
TaqI TCGA 3 cut(s) 550, 573, 631
TasI AATT 4 cut(s) 357, 396, 518, 1161
TatI WGTACW 2 cut(s) 450, 489
TauI GCSGC 2 cut(s) 580, 919
TfiI GAWTC 1 cut(s) 637
Tru1I TTAA 5 cut(s) 86, 240, 521, 764, 1199
Tru9I TTAA 5 cut(s) 86, 240, 521, 764, 1199
TseFI GTSAC 7 cut(s) 270, 370, 646, 817, 943, 1024, 1087
TseI GCWGC 3 cut(s) 382, 727, 802
Tsp45I GTSAC 7 cut(s) 270, 370, 646, 817, 943, 1024, 1087
TspDTI ATGAA 4 cut(s) 13, 130, 274, 428
Tth111I GACNNNGTC 1 cut(s) 1175
VpaK11BI GGWCC 1 cut(s) 529
VspI ATTAAT 2 cut(s) 86, 521
XbaI TCTAGA 1 cut(s) 514
XceI RCATGY 1 cut(s) 505
XhoI CTCGAG 1 cut(s) 549
XmiI GTMKAC 1 cut(s) 672
XspI CTAG 2 cut(s) 200, 515
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.