FvH4_1g25220

Long-chain-alcohol

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000676
Physical Location & Seq
Forward (+)
17023104 .. 17024153
1050 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g25220.t1

Sequence Viewer

Length: 1050 bp
ATGGAGGAAGAGCTCAAGAACTTCATCAAGGTATGGATCACAACCATCTTATGTCTATGTTATTGCCATAACATAGTCTCTAGATTAATCCCAAAGGGCCTGCTCACGCTCATCTCCCTCCTCCCTGTTTTCTACCTCTTCATCACCACCCCCTTAACTCTCCACTCCTTCCATCTCTGCGGACCCACCACCTTCTTCCTAGTCTGGCTTGGAATCTTCAAGCTCCTCCTCTTCTCCTTCAACCTCGGCCCTCTATCACCACCCCCACCTTCTCTCTTCCATTTCATCTCCATTGCTTGCCTCCCCATCAAAATCAAACAGAACCCAAATCCCAAAGCCACCCAAAAACCCAGAAACCCTATTGGTCTGCCAAACAAGTCAATTGTGGTGGCTGTGAAAGCATTGCTTTTGGGTTTGATCATTCATAGCTACGAGTACAGACCACATTTGCACCCGTATGTGATCTTAGCCTTGTACTGTTGCCACATGTATTTGGCTCTAGATATTCTCCTGGCCCTGAGCGCCACTCCGGCTCGAGCTCTGTTTGGGTTCGAGCTTGAGCCCCAGTCCGACGAGCCTTACCTCTCCACTTCGCTTCAAGACTTTTGGGGCCGTCGATGGAATCTAATGGTCACAAATATCCTGCGCCCAAGTGTATACGATCCCATCCGGCGCGTGTCTGCGCGTGTGGTTGGGCGGCGGTTGGCCAGGCTGCCGGCGGTGATGGCCACGTTTGGGGTGTCCGGGTTAATGCACGAGGTTATTTACTATTATCTCACGCGCGTGCAGCCCACGTGGGAAGTGACATGGTTTTTTGTGCTACATGGGGCTTGTGTGGTGGTTGAGGTGGAGGTGAAGAAGGCGGTTAAGGGCAGGTGGAGGTTGCACCCGGTGGTTTCGAGGCCATTGACTTTGGTGTTCTTGGCTGTGACCGGCAACTGGCTGTTCTTTCCTCAGTTGATTAGGAATGGTGTTGATACAAAGGCTATAGGGGAATATGCAATTATGGTGGATTTTGTGAAGGCTAATTTGCCTCATTTACATAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MBOAT_2

Protein Analysis

350

Amino Acids

39.84

Weight (kDa)

9.63

Isoelectric Point (pI)

46.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MBOAT_2 PF13813 187 - 273 2.4e-18 Membrane bound O-acyl transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 864
Acc36I ACCTGC 1 cut(s) 864
AccI GTMKAC 1 cut(s) 657
AccII CGCG 4 cut(s) 675, 685, 781, 783
AciI CCGC 5 cut(s) 180, 697, 700, 719, 863
AclWI GGATC 2 cut(s) 44, 656
AcoI YGGCCR 2 cut(s) 705, 726
AcvI CACGTG 1 cut(s) 795
AdeI CACNNNGTG 1 cut(s) 892
AfaI GTAC 2 cut(s) 437, 476
AfiI CCNNNNNNNGG 2 cut(s) 735, 939
AflIII ACRYGT 1 cut(s) 486
AgsI TTSAA 3 cut(s) 220, 241, 599
AjnI CCWGG 2 cut(s) 510, 707
AleI CACNNNNGTG 1 cut(s) 782
AluBI AGCT 5 cut(s) 13, 223, 429, 539, 556
AluI AGCT 5 cut(s) 13, 223, 429, 539, 556
Alw21I GWGCWC 2 cut(s) 15, 541
Alw26I GTCTC 1 cut(s) 82
AlwI GGATC 2 cut(s) 44, 656
Ama87I CYCGRG 1 cut(s) 534
AoxI GGCC 7 cut(s) 97, 247, 513, 610, 705, 726, 902
ApeKI GCWGC 2 cut(s) 712, 787
AseI ATTAAT 1 cut(s) 86
AspLEI GCGC 5 cut(s) 524, 648, 675, 685, 783
AspS9I GGNCC 5 cut(s) 97, 182, 248, 514, 610
AsuC2I CCSGG 2 cut(s) 745, 890
AsuHPI GGTGA 4 cut(s) 136, 249, 733, 865
AvaI CYCGRG 1 cut(s) 534
AvaII GGWCC 1 cut(s) 182
BalI TGGCCA 2 cut(s) 707, 728
BanII GRGCYC 3 cut(s) 15, 541, 564
BauI CACGAG 1 cut(s) 755
BbrPI CACGTG 1 cut(s) 795
Bbv12I GWGCWC 2 cut(s) 15, 541
BbvI GCAGC 2 cut(s) 699, 799
BccI CCATC 6 cut(s) 53, 180, 314, 612, 674, 718
BceAI ACGGC 1 cut(s) 597
BciT130I CCWGG 2 cut(s) 512, 709
BclI TGATCA 1 cut(s) 417
BcnI CCSGG 2 cut(s) 745, 890
BcoDI GTCTC 1 cut(s) 82
BfaI CTAG 3 cut(s) 81, 200, 500
BfmI CTRYAG 1 cut(s) 987
BfoI RGCGCY 1 cut(s) 525
BfuAI ACCTGC 1 cut(s) 864
BglI GCCNNNNNGGC 1 cut(s) 530
BisI GCNGC 3 cut(s) 698, 713, 788
BlsI GCNGC 3 cut(s) 699, 714, 789
Bme1390I CCNGG 4 cut(s) 512, 709, 745, 890
Bme18I GGWCC 1 cut(s) 182
BmeT110I CYCGRG 1 cut(s) 534
BmgT120I GGNCC 5 cut(s) 97, 182, 248, 514, 610
BmiI GGNNCC 2 cut(s) 184, 611
BmrFI CCNGG 4 cut(s) 512, 709, 745, 890
BmrI ACTGGG 1 cut(s) 559
BmuI ACTGGG 1 cut(s) 559
BplI GAGNNNNNCTC 2 cut(s) 511, 543
Bpu10I CCTNAGC 1 cut(s) 518
BpuEI CTTGAG 1 cut(s) 578
BpuMI CCSGG 2 cut(s) 745, 890
BsaAI YACGTR 1 cut(s) 795
BsaJI CCNNGG 1 cut(s) 244
Bsc4I CCNNNNNNNGG 2 cut(s) 735, 939
Bse118I RCCGGY 2 cut(s) 715, 932
Bse1I ACTGG 2 cut(s) 565, 944
Bse3DI GCAATG 2 cut(s) 291, 401
BseBI CCWGG 2 cut(s) 512, 709
BseDI CCNNGG 1 cut(s) 244
BseGI GGATG 1 cut(s) 666
BseLI CCNNNNNNNGG 2 cut(s) 735, 939
BseMI GCAATG 2 cut(s) 291, 401
BseMII CTCAG 2 cut(s) 509, 968
BseNI ACTGG 2 cut(s) 565, 944
BseRI GAGGAG 3 cut(s) 110, 215, 218
BseXI GCAGC 2 cut(s) 699, 799
BsgI GTGCAG 1 cut(s) 806
Bsh1236I CGCG 4 cut(s) 675, 685, 781, 783
BshFI GGCC 7 cut(s) 99, 249, 515, 612, 707, 728, 904
BsiHKAI GWGCWC 2 cut(s) 15, 541
BsiHKCI CYCGRG 1 cut(s) 534
BsiSI CCGG 6 cut(s) 530, 670, 716, 744, 890, 933
BslI CCNNNNNNNGG 2 cut(s) 735, 939
BsmAI GTCTC 1 cut(s) 82
BsnI GGCC 7 cut(s) 99, 249, 515, 612, 707, 728, 904
BsoBI CYCGRG 1 cut(s) 534
Bsp1286I GDGCHC 3 cut(s) 15, 541, 564
Bsp143I GATC 4 cut(s) 36, 417, 462, 661
BspACI CCGC 5 cut(s) 180, 697, 700, 719, 863
BspANI GGCC 7 cut(s) 99, 249, 515, 612, 707, 728, 904
BspCNI CTCAG 2 cut(s) 510, 967
BspFNI CGCG 4 cut(s) 675, 685, 781, 783
BspLI GGNNCC 2 cut(s) 184, 611
BspMI ACCTGC 1 cut(s) 864
BspPI GGATC 2 cut(s) 44, 656
BspQI GCTCTTC 1 cut(s) 3
BsrDI GCAATG 2 cut(s) 291, 401
BsrFI RCCGGY 2 cut(s) 715, 932
BsrI ACTGG 2 cut(s) 565, 944
BssAI RCCGGY 2 cut(s) 715, 932
BssECI CCNNGG 1 cut(s) 244
BssMI GATC 4 cut(s) 36, 417, 462, 661
BssNAI GTATAC 1 cut(s) 658
BssSI CACGAG 1 cut(s) 755
Bst1107I GTATAC 1 cut(s) 658
Bst2BI CACGAG 1 cut(s) 755
Bst2UI CCWGG 2 cut(s) 512, 709
Bst4CI ACNGT 1 cut(s) 479
Bst6I CTCTTC 4 cut(s) 3, 143, 236, 281
BstBAI YACGTR 1 cut(s) 795
BstC8I GCNNGC 4 cut(s) 101, 298, 717, 785
BstDEI CTNAG 3 cut(s) 466, 518, 954
BstF5I GGATG 1 cut(s) 666
BstFNI CGCG 4 cut(s) 675, 685, 781, 783
BstH2I RGCGCY 1 cut(s) 525
BstHHI GCGC 5 cut(s) 524, 648, 675, 685, 783
BstKTI GATC 4 cut(s) 39, 420, 465, 664
BstMAI GTCTC 1 cut(s) 82
BstMBI GATC 4 cut(s) 36, 417, 462, 661
BstMWI GCNNNNNNNGC 5 cut(s) 398, 521, 530, 725, 787
BstNI CCWGG 2 cut(s) 512, 709
BstNSI RCATGY 1 cut(s) 490
BstSCI CCNGG 4 cut(s) 510, 707, 743, 888
BstSFI CTRYAG 1 cut(s) 987
BstUI CGCG 4 cut(s) 675, 685, 781, 783
BstV1I GCAGC 2 cut(s) 699, 799
BstZ17I GTATAC 1 cut(s) 658
BsuRI GGCC 7 cut(s) 99, 249, 515, 612, 707, 728, 904
BtsCI GGATG 1 cut(s) 666
BveI ACCTGC 1 cut(s) 864
Cac8I GCNNGC 4 cut(s) 101, 298, 717, 785
CfoI GCGC 5 cut(s) 524, 648, 675, 685, 783
Cfr10I RCCGGY 2 cut(s) 715, 932
Cfr13I GGNCC 5 cut(s) 97, 182, 248, 514, 610
Csp6I GTAC 2 cut(s) 436, 475
CspCI CAANNNNNGTGG 4 cut(s) 369, 404, 990, 1025
CviAII CATG 3 cut(s) 487, 807, 824
CviQI GTAC 2 cut(s) 436, 475
DdeI CTNAG 3 cut(s) 466, 518, 954
DpnI GATC 4 cut(s) 38, 419, 464, 663
DpnII GATC 4 cut(s) 36, 417, 462, 661
DraIII CACNNNGTG 1 cut(s) 892
EaeI YGGCCR 2 cut(s) 705, 726
Eam1104I CTCTTC 4 cut(s) 3, 143, 236, 281
EarI CTCTTC 4 cut(s) 3, 143, 236, 281
Ecl136II GAGCTC 2 cut(s) 13, 539
Eco24I GRGCYC 3 cut(s) 15, 541, 564
Eco47I GGWCC 1 cut(s) 182
Eco53kI GAGCTC 2 cut(s) 13, 539
Eco72I CACGTG 1 cut(s) 795
Eco88I CYCGRG 1 cut(s) 534
EcoICRI GAGCTC 2 cut(s) 13, 539
EcoO109I RGGNCCY 1 cut(s) 97
EcoRII CCWGG 2 cut(s) 510, 707
EcoT38I GRGCYC 3 cut(s) 15, 541, 564
FaeI CATG 3 cut(s) 490, 810, 827
FalI AAGNNNNNCTT 2 cut(s) 390, 422
FatI CATG 3 cut(s) 486, 806, 823
FbaI TGATCA 1 cut(s) 417
FblI GTMKAC 1 cut(s) 657
Fnu4HI GCNGC 3 cut(s) 698, 713, 788
FokI GGATG 1 cut(s) 653
FriOI GRGCYC 3 cut(s) 15, 541, 564
Fsp4HI GCNGC 3 cut(s) 698, 713, 788
FspBI CTAG 3 cut(s) 81, 200, 500
GlaI GCGC 5 cut(s) 523, 647, 674, 684, 782
GluI GCNGC 3 cut(s) 698, 713, 788
HaeII RGCGCY 1 cut(s) 525
HaeIII GGCC 7 cut(s) 99, 249, 515, 612, 707, 728, 904
HapII CCGG 6 cut(s) 530, 670, 716, 744, 890, 933
HhaI GCGC 5 cut(s) 524, 648, 675, 685, 783
Hin1II CATG 3 cut(s) 490, 810, 827
Hin6I GCGC 5 cut(s) 522, 646, 673, 683, 781
HinP1I GCGC 5 cut(s) 522, 646, 673, 683, 781
HinfI GANTC 2 cut(s) 213, 622
HpaII CCGG 6 cut(s) 530, 670, 716, 744, 890, 933
HphI GGTGA 4 cut(s) 136, 249, 733, 865
Hpy166II GTNNAC 1 cut(s) 658
Hpy188I TCNGA 1 cut(s) 571
Hpy188III TCNNGA 4 cut(s) 16, 81, 500, 599
Hpy8I GTNNAC 1 cut(s) 658
Hpy99I CGWCG 2 cut(s) 575, 618
HpyAV CCTTC 6 cut(s) 178, 202, 247, 279, 853, 1015
HpyCH4III ACNGT 1 cut(s) 479
HpyCH4IV ACGT 2 cut(s) 731, 794
HpyCH4V TGCA 5 cut(s) 451, 754, 787, 886, 1001
HpyF10VI GCNNNNNNNGC 5 cut(s) 398, 521, 530, 725, 787
HpyF3I CTNAG 3 cut(s) 466, 518, 954
HpySE526I ACGT 2 cut(s) 731, 794
Hsp92II CATG 3 cut(s) 490, 810, 827
HspAI GCGC 5 cut(s) 522, 646, 673, 683, 781
KroI GCCGGC 1 cut(s) 715
KroNI GCCGGC 1 cut(s) 717
Ksp22I TGATCA 1 cut(s) 417
Kzo9I GATC 4 cut(s) 36, 417, 462, 661
LguI GCTCTTC 1 cut(s) 3
LmnI GCTCC 1 cut(s) 228
Lsp1109I GCAGC 2 cut(s) 699, 799
MaeI CTAG 3 cut(s) 81, 200, 500
MaeII ACGT 2 cut(s) 731, 794
MaeIII GTNAC 3 cut(s) 631, 802, 928
MalI GATC 4 cut(s) 38, 419, 464, 663
MboI GATC 4 cut(s) 36, 417, 462, 661
MboII GAAGA 7 cut(s) 20, 130, 187, 208, 223, 268, 868
MfeI CAATTG 1 cut(s) 381
MhlI GDGCHC 3 cut(s) 15, 541, 564
MlsI TGGCCA 2 cut(s) 707, 728
MluCI AATT 3 cut(s) 381, 1002, 1027
MluNI TGGCCA 2 cut(s) 707, 728
MmeI TCCRAC 1 cut(s) 594
Mox20I TGGCCA 2 cut(s) 707, 728
MroNI GCCGGC 1 cut(s) 715
MscI TGGCCA 2 cut(s) 707, 728
MseI TTAA 4 cut(s) 86, 155, 749, 867
MslI CAYNNNNRTG 2 cut(s) 456, 782
Msp20I TGGCCA 2 cut(s) 707, 728
MspI CCGG 6 cut(s) 530, 670, 716, 744, 890, 933
MspR9I CCNGG 4 cut(s) 512, 709, 745, 890
MunI CAATTG 1 cut(s) 381
MvaI CCWGG 2 cut(s) 512, 709
MvnI CGCG 4 cut(s) 675, 685, 781, 783
MwoI GCNNNNNNNGC 5 cut(s) 398, 521, 530, 725, 787
NaeI GCCGGC 1 cut(s) 717
NciI CCSGG 2 cut(s) 745, 890
NdeII GATC 4 cut(s) 36, 417, 462, 661
NgoMIV GCCGGC 1 cut(s) 715
NlaIII CATG 3 cut(s) 490, 810, 827
NlaIV GGNNCC 2 cut(s) 184, 611
NmeAIII GCCGAG 1 cut(s) 225
NmuCI GTSAC 3 cut(s) 631, 802, 928
NspI RCATGY 1 cut(s) 490
OliI CACNNNNGTG 1 cut(s) 782
PaeR7I CTCGAG 1 cut(s) 534
PaqCI CACCTGC 1 cut(s) 864
PciI ACATGT 1 cut(s) 486
PciSI GCTCTTC 1 cut(s) 3
PdiI GCCGGC 1 cut(s) 717
PfeI GAWTC 2 cut(s) 213, 622
PkrI GCNGC 3 cut(s) 699, 714, 789
PmaCI CACGTG 1 cut(s) 795
PmlI CACGTG 1 cut(s) 795
Ppu21I YACGTR 1 cut(s) 795
PscI ACATGT 1 cut(s) 486
PshBI ATTAAT 1 cut(s) 86
Psp124BI GAGCTC 2 cut(s) 15, 541
Psp6I CCWGG 2 cut(s) 510, 707
PspCI CACGTG 1 cut(s) 795
PspGI CCWGG 2 cut(s) 510, 707
PspN4I GGNNCC 2 cut(s) 184, 611
PspPI GGNCC 5 cut(s) 97, 182, 248, 514, 610
PspXI VCTCGAGB 1 cut(s) 534
RsaI GTAC 2 cut(s) 437, 476
RsaNI GTAC 2 cut(s) 436, 475
RseI CAYNNNNRTG 2 cut(s) 456, 782
SacI GAGCTC 2 cut(s) 15, 541
SapI GCTCTTC 1 cut(s) 3
SaqAI TTAA 4 cut(s) 86, 155, 749, 867
SatI GCNGC 3 cut(s) 698, 713, 788
Sau3AI GATC 4 cut(s) 36, 417, 462, 661
Sau96I GGNCC 5 cut(s) 97, 182, 248, 514, 610
ScrFI CCNGG 4 cut(s) 512, 709, 745, 890
SduI GDGCHC 3 cut(s) 15, 541, 564
SfcI CTRYAG 1 cut(s) 987
Sfr274I CTCGAG 1 cut(s) 534
SinI GGWCC 1 cut(s) 182
SlaI CTCGAG 1 cut(s) 534
SmiMI CAYNNNNRTG 2 cut(s) 456, 782
SmlI CTYRAG 3 cut(s) 14, 534, 557
SmoI CTYRAG 3 cut(s) 14, 534, 557
Sse9I AATT 3 cut(s) 381, 1002, 1027
SsiI CCGC 5 cut(s) 180, 697, 700, 719, 863
SspMI CTAG 3 cut(s) 81, 200, 500
SstI GAGCTC 2 cut(s) 15, 541
StyD4I CCNGG 4 cut(s) 510, 707, 743, 888
TaaI ACNGT 1 cut(s) 479
TaiI ACGT 2 cut(s) 734, 797
TaqI TCGA 4 cut(s) 535, 552, 616, 899
TasI AATT 3 cut(s) 381, 1002, 1027
TatI WGTACW 2 cut(s) 435, 474
TauI GCSGC 1 cut(s) 700
TfiI GAWTC 2 cut(s) 213, 622
Tru1I TTAA 4 cut(s) 86, 155, 749, 867
Tru9I TTAA 4 cut(s) 86, 155, 749, 867
TseFI GTSAC 3 cut(s) 631, 802, 928
TseI GCWGC 2 cut(s) 712, 787
Tsp45I GTSAC 3 cut(s) 631, 802, 928
TspDTI ATGAA 4 cut(s) 13, 130, 274, 413
VpaK11BI GGWCC 1 cut(s) 182
VspI ATTAAT 1 cut(s) 86
XbaI TCTAGA 2 cut(s) 80, 499
XceI RCATGY 1 cut(s) 490
XhoI CTCGAG 1 cut(s) 534
XmiI GTMKAC 1 cut(s) 657
XspI CTAG 3 cut(s) 81, 200, 500
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.