MD03G1191200.v1.1

Long-chain-alcohol

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
OG0000676
Physical Location & Seq
Forward (+)
26274993 .. 26275289
297 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1191200.v1.1.491

Sequence Viewer

Length: 297 bp
ATGCACGAGGTGATTTATTATTATCTCACACGTGTATCTCCTACATGGGAAGTGACGTGGTTCTTTGTGCTACATGGATTGTGCGTAGCAATCGAGGTGGAGGTGAAGAAGGCGGTGGCCGAGAGATGGCGGTTGCACCCGTTGGTTTCGGGGCCGTTGACGTTGGGGTTCTTGGATGGGACAGCCAATTGGCTGTTCTTCCCTCAGTTGCTGAGAAATGGCGTGGATGTCAAGGCTATAGATGAGTATCCAGTTATGGTAGATTTTGTCAAGGCACACATGCCCTTACTGTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MBOAT_2

Protein Analysis

99

Amino Acids

11.33

Weight (kDa)

6.02

Isoelectric Point (pI)

34.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 113, 130
AcoI YGGCCR 1 cut(s) 117
AcvI CACGTG 1 cut(s) 32
AdeI CACNNNGTG 1 cut(s) 10
AfiI CCNNNNNNNGG 1 cut(s) 126
AflIII ACRYGT 2 cut(s) 29, 31
AjiI CACGTC 1 cut(s) 57
AjuI GAANNNNNNNTTGG 2 cut(s) 179, 211
AlwNI CAGNNNCTG 1 cut(s) 211
AoxI GGCC 2 cut(s) 117, 152
AspS9I GGNCC 1 cut(s) 152
AsuHPI GGTGA 2 cut(s) 22, 115
BaeI ACNNNNGTAYC 2 cut(s) 18, 51
BauI CACGAG 1 cut(s) 5
BbrPI CACGTG 1 cut(s) 32
BccI CCATC 2 cut(s) 120, 170
BceAI ACGGC 1 cut(s) 139
BciVI GTATCC 1 cut(s) 258
BfmI CTRYAG 1 cut(s) 237
BfuI GTATCC 1 cut(s) 258
BmgBI CACGTC 1 cut(s) 57
BmgT120I GGNCC 1 cut(s) 152
BmiI GGNNCC 1 cut(s) 153
BsaAI YACGTR 1 cut(s) 32
BsaBI GATNNNNATC 1 cut(s) 246
Bsc4I CCNNNNNNNGG 1 cut(s) 126
Bse1I ACTGG 1 cut(s) 251
Bse8I GATNNNNATC 1 cut(s) 246
BseGI GGATG 2 cut(s) 181, 232
BseJI GATNNNNATC 1 cut(s) 246
BseLI CCNNNNNNNGG 1 cut(s) 126
BseMII CTCAG 2 cut(s) 203, 218
BseNI ACTGG 1 cut(s) 251
BshFI GGCC 2 cut(s) 119, 154
BslFI GGGAC 1 cut(s) 193
BslI CCNNNNNNNGG 1 cut(s) 126
BsmFI GGGAC 1 cut(s) 193
BsnI GGCC 2 cut(s) 119, 154
BspACI CCGC 2 cut(s) 113, 130
BspANI GGCC 2 cut(s) 119, 154
BspCNI CTCAG 2 cut(s) 204, 217
BspHI TCATGA 1 cut(s) 293
BspLI GGNNCC 1 cut(s) 153
BsrI ACTGG 1 cut(s) 251
BssSI CACGAG 1 cut(s) 5
Bst2BI CACGAG 1 cut(s) 5
Bst4CI ACNGT 1 cut(s) 291
BstBAI YACGTR 1 cut(s) 32
BstDEI CTNAG 2 cut(s) 204, 212
BstF5I GGATG 2 cut(s) 181, 232
BstNSI RCATGY 1 cut(s) 283
BstSFI CTRYAG 1 cut(s) 237
BsuI GTATCC 1 cut(s) 258
BsuRI GGCC 2 cut(s) 119, 154
BtrI CACGTC 1 cut(s) 57
BtsCI GGATG 2 cut(s) 181, 232
CaiI CAGNNNCTG 1 cut(s) 211
CciI TCATGA 1 cut(s) 293
Cfr13I GGNCC 1 cut(s) 152
CspCI CAANNNNNGTGG 2 cut(s) 78, 113
CviAII CATG 4 cut(s) 45, 74, 280, 294
CviJI RGCY 5 cut(s) 119, 154, 185, 193, 236
CviKI_1 RGCY 5 cut(s) 119, 154, 185, 193, 236
DdeI CTNAG 2 cut(s) 204, 212
DraIII CACNNNGTG 1 cut(s) 10
EaeI YGGCCR 1 cut(s) 117
Eco72I CACGTG 1 cut(s) 32
FaeI CATG 4 cut(s) 48, 77, 283, 297
FaiI YATR 6 cut(s) 46, 75, 239, 257, 281, 295
FaqI GGGAC 1 cut(s) 193
FatI CATG 4 cut(s) 44, 73, 279, 293
FokI GGATG 2 cut(s) 188, 239
HaeIII GGCC 2 cut(s) 119, 154
Hin1II CATG 4 cut(s) 48, 77, 283, 297
HincII GTYRAC 1 cut(s) 159
HindII GTYRAC 1 cut(s) 159
HphI GGTGA 2 cut(s) 22, 115
Hpy166II GTNNAC 1 cut(s) 159
Hpy188III TCNNGA 1 cut(s) 294
Hpy8I GTNNAC 1 cut(s) 159
HpyAV CCTTC 1 cut(s) 103
HpyCH4III ACNGT 1 cut(s) 291
HpyCH4IV ACGT 3 cut(s) 31, 56, 161
HpyCH4V TGCA 2 cut(s) 4, 136
HpyF3I CTNAG 2 cut(s) 204, 212
HpySE526I ACGT 3 cut(s) 31, 56, 161
Hsp92II CATG 4 cut(s) 48, 77, 283, 297
LpnPI CCDG 1 cut(s) 264
MaeII ACGT 3 cut(s) 31, 56, 161
MaeIII GTNAC 1 cut(s) 52
MboII GAAGA 2 cut(s) 118, 190
MfeI CAATTG 1 cut(s) 187
MluCI AATT 1 cut(s) 187
MnlI CCTC 3 cut(s) 88, 94, 213
MunI CAATTG 1 cut(s) 187
NlaIII CATG 4 cut(s) 48, 77, 283, 297
NlaIV GGNNCC 1 cut(s) 153
NmeAIII GCCGAG 1 cut(s) 145
NmuCI GTSAC 1 cut(s) 52
NspI RCATGY 1 cut(s) 283
PagI TCATGA 1 cut(s) 293
PmaCI CACGTG 1 cut(s) 32
PmlI CACGTG 1 cut(s) 32
Ppu21I YACGTR 1 cut(s) 32
PspCI CACGTG 1 cut(s) 32
PspN4I GGNNCC 1 cut(s) 153
PspPI GGNCC 1 cut(s) 152
PstNI CAGNNNCTG 1 cut(s) 211
Sau96I GGNCC 1 cut(s) 152
SetI ASST 6 cut(s) 12, 34, 59, 99, 105, 164
SfcI CTRYAG 1 cut(s) 237
Sse9I AATT 1 cut(s) 187
SsiI CCGC 2 cut(s) 113, 130
TaaI ACNGT 1 cut(s) 291
TaiI ACGT 3 cut(s) 34, 59, 164
TaqI TCGA 1 cut(s) 93
TasI AATT 1 cut(s) 187
TseFI GTSAC 1 cut(s) 52
Tsp45I GTSAC 1 cut(s) 52
XceI RCATGY 1 cut(s) 283
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.