Rorug03G0217500

Long-chain-alcohol

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0000676
Physical Location & Seq
Reverse (-)
19816381 .. 19818256
1876 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0217500.1

Sequence Viewer

Length: 1158 bp
ATGCGAAGCTCAACCTTCTTCCCCAAGAACATTTCTTTACCAACTCCTCTAGTAATGTCGACCTCTTCTCTATCCATGGCTTCCACAAGTACCACTTGCTCTTCTTCACTTTGCAACAAAATCTCTAACTTCTCACTCACCCCAATCCCCACCCACTTACAACCTCAATTTAAACCCCTTAAACCCCTGAAGCTGAAAGCCCATTTCTCTTACTTCTCTCGTCTCTCTTCTCTCCACCATTTCCGCCGCCCCTTTTCGGCCCTAGACGGCCTCGAAGTCGAAGAAGGCAATGAAAGCTCGGAGGAAGAAGGAGAAGAACAAAAGGACCCACAAGCAGAATTGCTTGAAGAAGAAGAAGAAAAAGAAGAGCCAAAGGAAGCAGGGTCTGACACAAGTGACGCTGGGAGGCTCTATGTGGGGAACTTGCCTTATTCTATGACTTCTACCCAGTTGTCTGAGATTTTCGGCGAGGCGGGTACTGTCACTTATTCAGAGATTATTTATGATAGAGTTACTGATAGGAGCAGGGGATTTGGGTTTGTTACAATGTCGAACGTTGAGGAAGCTCAAGAGGCCATTCGGATGTTCGATGGTTCTCAAGTAGGCGGCCGAACTGTGAGGGTAAACTTCCCAGAAGTGCCAAGAGGGGGTGAAAGGGAAATTTTGGGACCCAAGATAAGGAATCCTGGCTACAAGGTCTACATAGATAGCCCTAATAAGATCTATGCAGGAAACCTTGGTTGGGGCCTGACTTCTCAGGGTCTTAAAGATGCCTTTGAAGGCCAGCCAGGGCTATTGGGTGCCAAGGTCATTTATGAGAGGGGTTCAGGAAGATCTCGAGGTTTTGGATTCGTCACTTTCGACACTGCTGCCGCTGCAGAAGCTGCTGTGACTGCCATGAATGGAGTGGAGGTTGATGGGCGGGCTTTGCGACTAAACATGGCTTCAGAAAGAGCTAGGACTGTAACTGTTACTCCACCTCCAGCATCAGAAACTAGTACAGAAAACACAGAGGCCAGTGAATTGGTTTCTCCCTCAGCATCTGAAACTACTGCAGAAGACACTACAGACAGTGGTGAAGTGGTTTCTTCCCCAGCATCAGAAACAACTGCAGAAGATGCAGACAGCAGTGAATTGATTTCCAGCGTTAGCATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MBOAT_2

Protein Analysis

385

Amino Acids

41.52

Weight (kDa)

4.69

Isoelectric Point (pI)

50.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 137 - 207 3.8e-20 RNA recognition motif
RRM_1 PF00076 241 - 311 2.9e-15 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 800
AccI GTMKAC 2 cut(s) 59, 699
AciI CCGC 6 cut(s) 244, 247, 473, 606, 873, 922
AclI AACGTT 1 cut(s) 555
AcoI YGGCCR 1 cut(s) 607
AcsI RAATTY 1 cut(s) 660
AcuI CTGAAG 2 cut(s) 209, 930
AfaI GTAC 3 cut(s) 91, 478, 1000
AfiI CCNNNNNNNGG 4 cut(s) 256, 647, 678, 742
AgsI TTSAA 2 cut(s) 347, 779
AhlI ACTAGT 1 cut(s) 995
AjnI CCWGG 2 cut(s) 685, 787
AjuI GAANNNNNNNTTGG 2 cut(s) 724, 756
AluBI AGCT 6 cut(s) 9, 193, 297, 566, 884, 956
AluI AGCT 6 cut(s) 9, 193, 297, 566, 884, 956
Alw26I GTCTC 1 cut(s) 227
AlwNI CAGNNNCTG 3 cut(s) 386, 884, 1043
Ama87I CYCGRG 1 cut(s) 837
AoxI GGCC 7 cut(s) 258, 268, 573, 607, 745, 781, 1014
ApeKI GCWGC 3 cut(s) 869, 875, 884
ApoI RAATTY 1 cut(s) 660
AspS9I GGNCC 4 cut(s) 259, 325, 668, 745
AsuHPI GGTGA 3 cut(s) 130, 662, 1088
AvaI CYCGRG 1 cut(s) 837
AvaII GGWCC 2 cut(s) 325, 668
BanI GGYRCC 1 cut(s) 800
BbsI GAAGAC 1 cut(s) 1065
BbvCI CCTCAGC 1 cut(s) 1036
BbvI GCAGC 3 cut(s) 856, 862, 871
BccI CCATC 2 cut(s) 584, 911
BceAI ACGGC 1 cut(s) 283
BcgI CGANNNNNNTGC 2 cut(s) 851, 885
BciT130I CCWGG 2 cut(s) 687, 789
BcoDI GTCTC 1 cut(s) 227
BcuI ACTAGT 1 cut(s) 995
BfaI CTAG 4 cut(s) 50, 263, 957, 996
BfmI CTRYAG 4 cut(s) 876, 1053, 1065, 1110
BglII AGATCT 2 cut(s) 720, 833
BisI GCNGC 6 cut(s) 247, 607, 870, 873, 876, 885
BlsI GCNGC 6 cut(s) 248, 608, 871, 874, 877, 886
Bme1390I CCNGG 2 cut(s) 687, 789
Bme18I GGWCC 2 cut(s) 325, 668
BmeT110I CYCGRG 1 cut(s) 837
BmgT120I GGNCC 4 cut(s) 259, 325, 668, 745
BmiI GGNNCC 5 cut(s) 327, 669, 670, 746, 802
BmrFI CCNGG 2 cut(s) 687, 789
BmrI ACTGGG 1 cut(s) 442
BmsI GCATC 5 cut(s) 760, 995, 1049, 1106, 1108
BmuI ACTGGG 1 cut(s) 442
BpiI GAAGAC 1 cut(s) 1065
BpmI CTGGAG 1 cut(s) 966
Bpu10I CCTNAGC 1 cut(s) 1036
BpuEI CTTGAG 2 cut(s) 552, 582
BsaJI CCNNGG 4 cut(s) 75, 736, 788, 804
BsaXI ACNNNNNCTCC 6 cut(s) 897, 927, 958, 964, 988, 994
Bsc4I CCNNNNNNNGG 4 cut(s) 256, 647, 678, 742
Bse1I ACTGG 2 cut(s) 448, 1017
Bse3DI GCAATG 1 cut(s) 295
BseBI CCWGG 2 cut(s) 687, 789
BseDI CCNNGG 4 cut(s) 75, 736, 788, 804
BseGI GGATG 1 cut(s) 588
BseLI CCNNNNNNNGG 4 cut(s) 256, 647, 678, 742
BseMI GCAATG 1 cut(s) 295
BseMII CTCAG 3 cut(s) 447, 770, 1050
BseNI ACTGG 2 cut(s) 448, 1017
BseRI GAGGAG 1 cut(s) 36
BseX3I CGGCCG 1 cut(s) 607
BseXI GCAGC 3 cut(s) 856, 862, 871
BseYI CCCAGC 2 cut(s) 401, 1093
Bsh1285I CGRYCG 1 cut(s) 610
BshFI GGCC 7 cut(s) 260, 270, 575, 609, 747, 783, 1016
BshNI GGYRCC 1 cut(s) 800
BsiEI CGRYCG 1 cut(s) 610
BsiHKCI CYCGRG 1 cut(s) 837
BslFI GGGAC 1 cut(s) 681
BslI CCNNNNNNNGG 4 cut(s) 256, 647, 678, 742
BsmAI GTCTC 1 cut(s) 227
BsmBI CGTCTC 1 cut(s) 227
BsmFI GGGAC 1 cut(s) 681
BsnI GGCC 7 cut(s) 260, 270, 575, 609, 747, 783, 1016
BsoBI CYCGRG 1 cut(s) 837
Bsp143I GATC 2 cut(s) 720, 833
Bsp19I CCATGG 1 cut(s) 75
BspACI CCGC 6 cut(s) 244, 247, 473, 606, 873, 922
BspANI GGCC 7 cut(s) 260, 270, 575, 609, 747, 783, 1016
BspCNI CTCAG 3 cut(s) 448, 769, 1049
BspLI GGNNCC 5 cut(s) 327, 669, 670, 746, 802
BspMAI CTGCAG 3 cut(s) 880, 1057, 1114
BspQI GCTCTTC 2 cut(s) 106, 360
BspT107I GGYRCC 1 cut(s) 800
BsrDI GCAATG 1 cut(s) 295
BsrI ACTGG 2 cut(s) 448, 1017
BssECI CCNNGG 4 cut(s) 75, 736, 788, 804
BssMI GATC 2 cut(s) 720, 833
BssT1I CCWWGG 3 cut(s) 75, 736, 804
Bst2UI CCWGG 2 cut(s) 687, 789
Bst4CI ACNGT 5 cut(s) 481, 616, 964, 970, 1073
Bst6I CTCTTC 4 cut(s) 70, 106, 232, 360
BstAPI GCANNNNNTGC 2 cut(s) 884, 1118
BstC8I GCNNGC 2 cut(s) 785, 924
BstDEI CTNAG 3 cut(s) 456, 756, 1036
BstDSI CCRYGG 1 cut(s) 75
BstF5I GGATG 1 cut(s) 588
BstKTI GATC 2 cut(s) 723, 836
BstMAI GTCTC 1 cut(s) 227
BstMBI GATC 2 cut(s) 720, 833
BstMCI CGRYCG 1 cut(s) 610
BstMWI GCNNNNNNNGC 8 cut(s) 294, 572, 875, 881, 884, 893, 928, 1118
BstNI CCWGG 2 cut(s) 687, 789
BstSCI CCNGG 2 cut(s) 685, 787
BstSFI CTRYAG 4 cut(s) 876, 1053, 1065, 1110
BstV1I GCAGC 3 cut(s) 856, 862, 871
BstV2I GAAGAC 1 cut(s) 1065
BstX2I RGATCY 2 cut(s) 720, 833
BstXI CCANNNNNNTGG 1 cut(s) 1024
BstYI RGATCY 2 cut(s) 720, 833
BstZI CGGCCG 1 cut(s) 607
BsuRI GGCC 7 cut(s) 260, 270, 575, 609, 747, 783, 1016
BtgI CCRYGG 1 cut(s) 75
BtsCI GGATG 1 cut(s) 588
BtsI GCAGTG 2 cut(s) 864, 1135
BtsIMutI CAGTG 4 cut(s) 864, 1024, 1078, 1135
Cac8I GCNNGC 2 cut(s) 785, 924
CaiI CAGNNNCTG 3 cut(s) 386, 884, 1043
Cfr13I GGNCC 4 cut(s) 259, 325, 668, 745
CseI GACGC 1 cut(s) 407
Csp6I GTAC 3 cut(s) 90, 477, 999
CviAII CATG 3 cut(s) 76, 898, 940
CviQI GTAC 3 cut(s) 90, 477, 999
DdeI CTNAG 3 cut(s) 456, 756, 1036
DpnI GATC 2 cut(s) 722, 835
DpnII GATC 2 cut(s) 720, 833
DraI TTTAAA 1 cut(s) 172
EaeI YGGCCR 1 cut(s) 607
EagI CGGCCG 1 cut(s) 607
Eam1104I CTCTTC 4 cut(s) 70, 106, 232, 360
EarI CTCTTC 4 cut(s) 70, 106, 232, 360
EciI GGCGGA 1 cut(s) 233
EclXI CGGCCG 1 cut(s) 607
Eco130I CCWWGG 3 cut(s) 75, 736, 804
Eco47I GGWCC 2 cut(s) 325, 668
Eco52I CGGCCG 1 cut(s) 607
Eco57I CTGAAG 2 cut(s) 209, 930
Eco88I CYCGRG 1 cut(s) 837
EcoO109I RGGNCCY 3 cut(s) 325, 668, 745
EcoRII CCWGG 2 cut(s) 685, 787
EcoT14I CCWWGG 3 cut(s) 75, 736, 804
ErhI CCWWGG 3 cut(s) 75, 736, 804
Esp3I CGTCTC 1 cut(s) 227
FaeI CATG 3 cut(s) 79, 901, 943
FaiI YATR 9 cut(s) 77, 414, 437, 504, 704, 726, 816, 899, 941
FalI AAGNNNNNCTT 2 cut(s) 79, 111
FaqI GGGAC 1 cut(s) 681
FatI CATG 3 cut(s) 75, 897, 939
FauI CCCGC 2 cut(s) 466, 915
FblI GTMKAC 2 cut(s) 59, 699
Fnu4HI GCNGC 6 cut(s) 247, 607, 870, 873, 876, 885
FokI GGATG 1 cut(s) 595
Fsp4HI GCNGC 6 cut(s) 247, 607, 870, 873, 876, 885
FspBI CTAG 4 cut(s) 50, 263, 957, 996
GluI GCNGC 6 cut(s) 247, 607, 870, 873, 876, 885
GsaI CCCAGC 2 cut(s) 405, 1097
GsuI CTGGAG 1 cut(s) 966
HaeIII GGCC 7 cut(s) 260, 270, 575, 609, 747, 783, 1016
HgaI GACGC 1 cut(s) 407
Hin1II CATG 3 cut(s) 79, 901, 943
HincII GTYRAC 1 cut(s) 60
HindII GTYRAC 1 cut(s) 60
HinfI GANTC 2 cut(s) 682, 849
HphI GGTGA 3 cut(s) 130, 662, 1088
Hpy166II GTNNAC 3 cut(s) 60, 625, 700
Hpy188III TCNNGA 3 cut(s) 569, 828, 837
Hpy8I GTNNAC 3 cut(s) 60, 625, 700
HpyAV CCTTC 4 cut(s) 25, 278, 302, 773
HpyCH4III ACNGT 5 cut(s) 481, 616, 964, 970, 1073
HpyCH4IV ACGT 1 cut(s) 555
HpyCH4V TGCA 6 cut(s) 114, 728, 878, 1055, 1112, 1121
HpyF10VI GCNNNNNNNGC 8 cut(s) 294, 572, 875, 881, 884, 893, 928, 1118
HpyF3I CTNAG 3 cut(s) 456, 756, 1036
HpySE526I ACGT 1 cut(s) 555
Hsp92II CATG 3 cut(s) 79, 901, 943
KflI GGGWCCC 1 cut(s) 668
Kzo9I GATC 2 cut(s) 720, 833
LguI GCTCTTC 2 cut(s) 106, 360
LmnI GCTCC 1 cut(s) 522
Lsp1109I GCAGC 3 cut(s) 856, 862, 871
LweI GCATC 5 cut(s) 760, 995, 1049, 1106, 1108
MaeI CTAG 4 cut(s) 50, 263, 957, 996
MaeII ACGT 1 cut(s) 555
MaeIII GTNAC 8 cut(s) 395, 481, 511, 541, 853, 889, 964, 970
MalI GATC 2 cut(s) 722, 835
MboI GATC 2 cut(s) 720, 833
MflI RGATCY 2 cut(s) 720, 833
MluCI AATT 5 cut(s) 167, 338, 660, 1022, 1133
MseI TTAA 3 cut(s) 171, 180, 765
MslI CAYNNNNRTG 1 cut(s) 581
MspA1I CMGCKG 1 cut(s) 875
MspR9I CCNGG 2 cut(s) 687, 789
MvaI CCWGG 2 cut(s) 687, 789
MwoI GCNNNNNNNGC 8 cut(s) 294, 572, 875, 881, 884, 893, 928, 1118
NcoI CCATGG 1 cut(s) 75
NdeII GATC 2 cut(s) 720, 833
NlaIII CATG 3 cut(s) 79, 901, 943
NlaIV GGNNCC 5 cut(s) 327, 669, 670, 746, 802
NmuCI GTSAC 4 cut(s) 395, 481, 853, 889
PaeR7I CTCGAG 1 cut(s) 837
PciSI GCTCTTC 2 cut(s) 106, 360
PcsI WCGNNNNNNNCGW 1 cut(s) 858
PfeI GAWTC 2 cut(s) 682, 849
PkrI GCNGC 6 cut(s) 248, 608, 871, 874, 877, 886
PpuMI RGGWCCY 2 cut(s) 325, 668
Psp1406I AACGTT 1 cut(s) 555
Psp5II RGGWCCY 2 cut(s) 325, 668
Psp6I CCWGG 2 cut(s) 685, 787
PspFI CCCAGC 2 cut(s) 401, 1093
PspGI CCWGG 2 cut(s) 685, 787
PspN4I GGNNCC 5 cut(s) 327, 669, 670, 746, 802
PspPI GGNCC 4 cut(s) 259, 325, 668, 745
PspPPI RGGWCCY 2 cut(s) 325, 668
PstI CTGCAG 3 cut(s) 880, 1057, 1114
PstNI CAGNNNCTG 3 cut(s) 386, 884, 1043
PsuI RGATCY 2 cut(s) 720, 833
RsaI GTAC 3 cut(s) 91, 478, 1000
RsaNI GTAC 3 cut(s) 90, 477, 999
RseI CAYNNNNRTG 1 cut(s) 581
SalI GTCGAC 1 cut(s) 58
SapI GCTCTTC 2 cut(s) 106, 360
SaqAI TTAA 3 cut(s) 171, 180, 765
SatI GCNGC 6 cut(s) 247, 607, 870, 873, 876, 885
Sau3AI GATC 2 cut(s) 720, 833
Sau96I GGNCC 4 cut(s) 259, 325, 668, 745
ScrFI CCNGG 2 cut(s) 687, 789
SfaNI GCATC 5 cut(s) 760, 995, 1049, 1106, 1108
SfcI CTRYAG 4 cut(s) 876, 1053, 1065, 1110
Sfr274I CTCGAG 1 cut(s) 837
SinI GGWCC 2 cut(s) 325, 668
SlaI CTCGAG 1 cut(s) 837
SmiMI CAYNNNNRTG 1 cut(s) 581
SmlI CTYRAG 3 cut(s) 567, 597, 837
SmoI CTYRAG 3 cut(s) 567, 597, 837
SpeI ACTAGT 1 cut(s) 995
Sse9I AATT 5 cut(s) 167, 338, 660, 1022, 1133
SsiI CCGC 6 cut(s) 244, 247, 473, 606, 873, 922
SspMI CTAG 4 cut(s) 50, 263, 957, 996
StyD4I CCNGG 2 cut(s) 685, 787
StyI CCWWGG 3 cut(s) 75, 736, 804
TaaI ACNGT 5 cut(s) 481, 616, 964, 970, 1073
TaiI ACGT 1 cut(s) 558
TaqI TCGA 7 cut(s) 59, 273, 279, 551, 588, 838, 861
TasI AATT 5 cut(s) 167, 338, 660, 1022, 1133
TatI WGTACW 1 cut(s) 998
TauI GCSGC 3 cut(s) 249, 609, 875
TfiI GAWTC 2 cut(s) 682, 849
Tru1I TTAA 3 cut(s) 171, 180, 765
Tru9I TTAA 3 cut(s) 171, 180, 765
TscAI CASTG 4 cut(s) 871, 1024, 1078, 1135
TseFI GTSAC 4 cut(s) 395, 481, 853, 889
TseI GCWGC 3 cut(s) 869, 875, 884
Tsp45I GTSAC 4 cut(s) 395, 481, 853, 889
TspDTI ATGAA 2 cut(s) 306, 914
TspRI CASTG 4 cut(s) 871, 1024, 1078, 1135
VpaK11BI GGWCC 2 cut(s) 325, 668
XapI RAATTY 1 cut(s) 660
XcmI CCANNNNNNNNNTGG 1 cut(s) 904
XhoI CTCGAG 1 cut(s) 837
XmiI GTMKAC 2 cut(s) 59, 699
XspI CTAG 4 cut(s) 50, 263, 957, 996
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.