Rw2G024180

Long-chain-alcohol

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0000676
Physical Location & Seq
Forward (+)
35702631 .. 35703728
1098 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G024180.1

Sequence Viewer

Length: 1098 bp
ATGGAGGGTGAGCTCAAGAACTTCATCAAGGTATGGATCACAGCCATTTTATGTCTATCTTACTGTCACTACACAGTCTCAAGATTAATCCCAAAGGGTTGGCTGAGGCTCATCTCTCTCCTTCCTGTCTTCTACCTATTCATCTCCATGCCCCTAAATCTCCATTCCTTCCATCTTTGTGCACTCACAACTTTCTTTTTAGTTTGGCTTGGCCTCTTCAAGCTCCTCCTCTTCTCCTTTGGCCTAGGCCCTTTGTCACCACCCCCACCATCAGTCTTCCATTTCATCTCCATAGCTTGCCTCCCCATCAAAATCAAACAAAAATCACCTCCAAAATCACTCCCAAATCCCAGAACCACTCAAAAACCCAAAAAATCTGTGAACCCAATTGGTCAACGTGTCACAAAGGGACTGCCCAATAAGTCAATTTTGTTGGCCGTTAAGGCCTTGGTACTGGGTGTGGTTATTCGTACGTACGAGTACAAACCACGTTTACACCCGTATGTGATCCTAGTCTTGTGTTGTTGCCATGTGTACTTAGGAGTAGAAATAGTCCTATTTTTGTGTGCAGCCCCAGCTGGAGCCATTTTTGGGTTCGAGCTGGAACATCAGTTCAATGAACCTTACCTCTCCACTTCGCTTCAAGACTTTTGGGGCAGGCGATGGAATTTAATGGTCTCGAAAATTCTACGCCCTACTGTATACGATCCCATCCGATATATGTGTGCACGTATAGTTGGGGCACGGTGGGCAAGGCTCCTGGCTACCATGTCGACCTTTGTTGTATCTGGATTAATGCACGAGGTGATTTATTACTATCTCACGCGTGTGCAGCCCACGTGGGAAGTAACGTGGTTTTTTGTTTTACAAGGGGCATGCATGGTGGTTGAGGTGGAGATGAAGAAGGCGGAAACCGGCACATGGTTGTTGCACCCGGCGATTTCGGGGTTGTTGACATTGGTGTTCTTGGCTGTCACTGCCAACTGGCTGTTCTTTCCTCAGTTGCTGAGGAATGGTGTTGATATAAAGGCTTTAGGAGAGTATGAAATTATGGTGGATTTTGTCAAGTCTAACTTACCCCATTATCATTCTCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MBOAT_2

Protein Analysis

365

Amino Acids

41.72

Weight (kDa)

9.5

Isoelectric Point (pI)

41.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MBOAT_2 PF13813 203 - 288 4.6e-19 Membrane bound O-acyl transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 702, 773
AccII CGCG 1 cut(s) 826
AciI CCGC 1 cut(s) 908
AclWI GGATC 3 cut(s) 44, 502, 701
AcoI YGGCCR 1 cut(s) 435
AcsI RAATTY 2 cut(s) 667, 684
AcvI CACGTG 1 cut(s) 840
AdeI CACNNNGTG 1 cut(s) 805
AfaI GTAC 5 cut(s) 453, 472, 476, 482, 536
AfiI CCNNNNNNNGG 2 cut(s) 591, 921
AflIII ACRYGT 2 cut(s) 397, 824
AgsI TTSAA 3 cut(s) 220, 616, 644
AjnI CCWGG 1 cut(s) 759
AjuI GAANNNNNNNTTGG 2 cut(s) 974, 1006
AleI CACNNNNGTG 1 cut(s) 827
AloI GAACNNNNNNTCC 2 cut(s) 596, 628
AluBI AGCT 5 cut(s) 13, 223, 296, 578, 601
AluI AGCT 5 cut(s) 13, 223, 296, 578, 601
Alw21I GWGCWC 3 cut(s) 15, 184, 730
Alw26I GTCTC 2 cut(s) 82, 682
Alw44I GTGCAC 2 cut(s) 180, 726
AlwI GGATC 3 cut(s) 44, 502, 701
AlwNI CAGNNNCTG 1 cut(s) 1006
AoxI GGCC 5 cut(s) 211, 241, 247, 435, 444
ApaLI GTGCAC 2 cut(s) 180, 726
ApeKI GCWGC 2 cut(s) 569, 832
ApoI RAATTY 2 cut(s) 667, 684
AseI ATTAAT 2 cut(s) 86, 794
AspA2I CCTAGG 1 cut(s) 244
AspS9I GGNCC 1 cut(s) 248
AsuC2I CCSGG 1 cut(s) 935
AsuHPI GGTGA 4 cut(s) 20, 249, 318, 817
AvrII CCTAGG 1 cut(s) 244
BaeGI GKGCMC 3 cut(s) 184, 730, 745
BanII GRGCYC 1 cut(s) 15
BauI CACGAG 1 cut(s) 800
BbrPI CACGTG 1 cut(s) 840
BbsI GAAGAC 2 cut(s) 121, 268
Bbv12I GWGCWC 3 cut(s) 15, 184, 730
BbvCI CCTCAGC 2 cut(s) 104, 1007
BbvI GCAGC 2 cut(s) 581, 844
BccI CCATC 5 cut(s) 180, 277, 314, 657, 719
BceAI ACGGC 1 cut(s) 422
BciT130I CCWGG 1 cut(s) 761
BcnI CCSGG 1 cut(s) 935
BcoDI GTCTC 2 cut(s) 82, 682
BfaI CTAG 2 cut(s) 245, 512
BglI GCCNNNNNGGC 1 cut(s) 443
BisI GCNGC 2 cut(s) 570, 833
BlnI CCTAGG 1 cut(s) 244
BlsI GCNGC 2 cut(s) 571, 834
Bme1390I CCNGG 2 cut(s) 761, 935
BmgT120I GGNCC 1 cut(s) 248
BmiI GGNNCC 2 cut(s) 583, 758
BmrFI CCNGG 2 cut(s) 761, 935
BmrI ACTGGG 1 cut(s) 464
BmuI ACTGGG 1 cut(s) 464
BpiI GAAGAC 2 cut(s) 121, 268
BpmI CTGGAG 1 cut(s) 600
Bpu10I CCTNAGC 2 cut(s) 104, 1007
BpuEI CTTGAG 1 cut(s) 64
BpuMI CCSGG 1 cut(s) 935
BsaAI YACGTR 3 cut(s) 474, 731, 840
BsaI GGTCTC 1 cut(s) 682
BsaJI CCNNGG 2 cut(s) 244, 447
Bsc4I CCNNNNNNNGG 2 cut(s) 591, 921
Bse118I RCCGGY 1 cut(s) 914
Bse1I ACTGG 2 cut(s) 459, 989
BseBI CCWGG 1 cut(s) 761
BseDI CCNNGG 2 cut(s) 244, 447
BseGI GGATG 1 cut(s) 711
BseLI CCNNNNNNNGG 2 cut(s) 591, 921
BseMII CTCAG 3 cut(s) 95, 998, 1013
BseNI ACTGG 2 cut(s) 459, 989
BseRI GAGGAG 2 cut(s) 215, 218
BseSI GKGCMC 3 cut(s) 184, 730, 745
BseXI GCAGC 2 cut(s) 581, 844
BseYI CCCAGC 1 cut(s) 574
BsgI GTGCAG 2 cut(s) 588, 851
Bsh1236I CGCG 1 cut(s) 826
BshFI GGCC 5 cut(s) 213, 243, 249, 437, 446
BsiHKAI GWGCWC 3 cut(s) 15, 184, 730
BsiSI CCGG 2 cut(s) 915, 935
BsiWI CGTACG 2 cut(s) 470, 474
BslFI GGGAC 1 cut(s) 423
BslI CCNNNNNNNGG 2 cut(s) 591, 921
BsmAI GTCTC 2 cut(s) 82, 682
BsmFI GGGAC 1 cut(s) 423
BsnI GGCC 5 cut(s) 213, 243, 249, 437, 446
Bso31I GGTCTC 1 cut(s) 682
Bsp1286I GDGCHC 4 cut(s) 15, 184, 730, 745
Bsp143I GATC 3 cut(s) 36, 507, 706
BspACI CCGC 1 cut(s) 908
BspANI GGCC 5 cut(s) 213, 243, 249, 437, 446
BspCNI CTCAG 3 cut(s) 96, 999, 1012
BspFNI CGCG 1 cut(s) 826
BspLI GGNNCC 2 cut(s) 583, 758
BspPI GGATC 3 cut(s) 44, 502, 701
BspTNI GGTCTC 1 cut(s) 682
BsrFI RCCGGY 1 cut(s) 914
BsrI ACTGG 2 cut(s) 459, 989
BssAI RCCGGY 1 cut(s) 914
BssECI CCNNGG 2 cut(s) 244, 447
BssMI GATC 3 cut(s) 36, 507, 706
BssNAI GTATAC 1 cut(s) 703
BssSI CACGAG 1 cut(s) 800
BssT1I CCWWGG 2 cut(s) 244, 447
Bst1107I GTATAC 1 cut(s) 703
Bst2BI CACGAG 1 cut(s) 800
Bst2UI CCWGG 1 cut(s) 761
Bst4CI ACNGT 4 cut(s) 65, 76, 700, 747
Bst6I CTCTTC 2 cut(s) 221, 236
BstBAI YACGTR 3 cut(s) 474, 731, 840
BstC8I GCNNGC 3 cut(s) 298, 659, 877
BstDEI CTNAG 4 cut(s) 104, 538, 999, 1007
BstF5I GGATG 1 cut(s) 711
BstFNI CGCG 1 cut(s) 826
BstKTI GATC 3 cut(s) 39, 510, 709
BstMAI GTCTC 2 cut(s) 82, 682
BstMBI GATC 3 cut(s) 36, 507, 706
BstMWI GCNNNNNNNGC 5 cut(s) 443, 575, 749, 832, 977
BstNI CCWGG 1 cut(s) 761
BstNSI RCATGY 1 cut(s) 879
BstSCI CCNGG 2 cut(s) 759, 933
BstSLI GKGCMC 3 cut(s) 184, 730, 745
BstSNI TACGTA 1 cut(s) 474
BstUI CGCG 1 cut(s) 826
BstV1I GCAGC 2 cut(s) 581, 844
BstV2I GAAGAC 2 cut(s) 121, 268
BstXI CCANNNNNNTGG 1 cut(s) 99
BstZ17I GTATAC 1 cut(s) 703
BsuRI GGCC 5 cut(s) 213, 243, 249, 437, 446
BtgZI GCGATG 1 cut(s) 676
BtsCI GGATG 1 cut(s) 711
BtsI GCAGTG 1 cut(s) 975
BtsIMutI CAGTG 1 cut(s) 975
Cac8I GCNNGC 3 cut(s) 298, 659, 877
CaiI CAGNNNCTG 1 cut(s) 1006
Cfr10I RCCGGY 1 cut(s) 914
Cfr13I GGNCC 1 cut(s) 248
Csp6I GTAC 5 cut(s) 452, 471, 475, 481, 535
CviAII CATG 6 cut(s) 148, 530, 769, 876, 880, 921
CviQI GTAC 5 cut(s) 452, 471, 475, 481, 535
DdeI CTNAG 4 cut(s) 104, 538, 999, 1007
DpnI GATC 3 cut(s) 38, 509, 708
DpnII GATC 3 cut(s) 36, 507, 706
DraIII CACNNNGTG 1 cut(s) 805
EaeI YGGCCR 1 cut(s) 435
Eam1104I CTCTTC 2 cut(s) 221, 236
EarI CTCTTC 2 cut(s) 221, 236
EciI GGCGGA 1 cut(s) 923
Ecl136II GAGCTC 1 cut(s) 13
Eco105I TACGTA 1 cut(s) 474
Eco130I CCWWGG 2 cut(s) 244, 447
Eco147I AGGCCT 1 cut(s) 446
Eco24I GRGCYC 1 cut(s) 15
Eco31I GGTCTC 1 cut(s) 682
Eco53kI GAGCTC 1 cut(s) 13
Eco72I CACGTG 1 cut(s) 840
EcoICRI GAGCTC 1 cut(s) 13
EcoO109I RGGNCCY 1 cut(s) 248
EcoRII CCWGG 1 cut(s) 759
EcoT14I CCWWGG 2 cut(s) 244, 447
EcoT22I ATGCAT 1 cut(s) 881
EcoT38I GRGCYC 1 cut(s) 15
ErhI CCWWGG 2 cut(s) 244, 447
FaeI CATG 6 cut(s) 151, 533, 772, 879, 883, 924
FalI AAGNNNNNCTT 2 cut(s) 1058, 1090
FaqI GGGAC 1 cut(s) 423
FatI CATG 6 cut(s) 147, 529, 768, 875, 879, 920
FblI GTMKAC 2 cut(s) 702, 773
Fnu4HI GCNGC 2 cut(s) 570, 833
FokI GGATG 1 cut(s) 698
FriOI GRGCYC 1 cut(s) 15
Fsp4HI GCNGC 2 cut(s) 570, 833
FspBI CTAG 2 cut(s) 245, 512
GluI GCNGC 2 cut(s) 570, 833
GsaI CCCAGC 1 cut(s) 578
GsuI CTGGAG 1 cut(s) 600
HaeIII GGCC 5 cut(s) 213, 243, 249, 437, 446
HapII CCGG 2 cut(s) 915, 935
Hin1II CATG 6 cut(s) 151, 533, 772, 879, 883, 924
HincII GTYRAC 3 cut(s) 395, 774, 954
HindII GTYRAC 3 cut(s) 395, 774, 954
HpaII CCGG 2 cut(s) 915, 935
HphI GGTGA 4 cut(s) 20, 249, 318, 817
Hpy166II GTNNAC 9 cut(s) 182, 382, 395, 494, 535, 703, 728, 774, 954
Hpy188I TCNGA 1 cut(s) 716
Hpy188III TCNNGA 5 cut(s) 16, 81, 644, 679, 789
Hpy8I GTNNAC 9 cut(s) 182, 382, 395, 494, 535, 703, 728, 774, 954
HpyAV CCTTC 3 cut(s) 131, 178, 898
HpyCH4III ACNGT 4 cut(s) 65, 76, 700, 747
HpyCH4IV ACGT 6 cut(s) 397, 473, 490, 730, 839, 851
HpyCH4V TGCA 7 cut(s) 182, 569, 728, 799, 832, 879, 931
HpyF10VI GCNNNNNNNGC 5 cut(s) 443, 575, 749, 832, 977
HpyF3I CTNAG 4 cut(s) 104, 538, 999, 1007
HpySE526I ACGT 6 cut(s) 397, 473, 490, 730, 839, 851
Hsp92II CATG 6 cut(s) 151, 533, 772, 879, 883, 924
Kzo9I GATC 3 cut(s) 36, 507, 706
LmnI GCTCC 3 cut(s) 228, 581, 762
Lsp1109I GCAGC 2 cut(s) 581, 844
MaeI CTAG 2 cut(s) 245, 512
MaeII ACGT 6 cut(s) 397, 473, 490, 730, 839, 851
MaeIII GTNAC 5 cut(s) 65, 255, 400, 847, 973
MalI GATC 3 cut(s) 38, 509, 708
MboI GATC 3 cut(s) 36, 507, 706
MboII GAAGA 5 cut(s) 121, 208, 223, 268, 913
MfeI CAATTG 1 cut(s) 387
MhlI GDGCHC 4 cut(s) 15, 184, 730, 745
MluCI AATT 5 cut(s) 387, 426, 667, 684, 1047
MluI ACGCGT 1 cut(s) 824
Mph1103I ATGCAT 1 cut(s) 881
MseI TTAA 5 cut(s) 86, 441, 671, 794, 1096
MslI CAYNNNNRTG 4 cut(s) 146, 177, 501, 827
MspA1I CMGCKG 1 cut(s) 578
MspI CCGG 2 cut(s) 915, 935
MspR9I CCNGG 2 cut(s) 761, 935
MunI CAATTG 1 cut(s) 387
MvaI CCWGG 1 cut(s) 761
MvnI CGCG 1 cut(s) 826
MwoI GCNNNNNNNGC 5 cut(s) 443, 575, 749, 832, 977
NciI CCSGG 1 cut(s) 935
NdeII GATC 3 cut(s) 36, 507, 706
NlaIII CATG 6 cut(s) 151, 533, 772, 879, 883, 924
NlaIV GGNNCC 2 cut(s) 583, 758
NmuCI GTSAC 4 cut(s) 65, 255, 400, 973
NsiI ATGCAT 1 cut(s) 881
NspI RCATGY 1 cut(s) 879
OliI CACNNNNGTG 1 cut(s) 827
PaeI GCATGC 1 cut(s) 879
PceI AGGCCT 1 cut(s) 446
Pfl23II CGTACG 2 cut(s) 470, 474
PkrI GCNGC 2 cut(s) 571, 834
PmaCI CACGTG 1 cut(s) 840
PmlI CACGTG 1 cut(s) 840
Ppu21I YACGTR 3 cut(s) 474, 731, 840
PshBI ATTAAT 2 cut(s) 86, 794
Psp124BI GAGCTC 1 cut(s) 15
Psp6I CCWGG 1 cut(s) 759
PspCI CACGTG 1 cut(s) 840
PspFI CCCAGC 1 cut(s) 574
PspGI CCWGG 1 cut(s) 759
PspLI CGTACG 2 cut(s) 470, 474
PspN4I GGNNCC 2 cut(s) 583, 758
PspPI GGNCC 1 cut(s) 248
PstNI CAGNNNCTG 1 cut(s) 1006
PvuII CAGCTG 1 cut(s) 578
RsaI GTAC 5 cut(s) 453, 472, 476, 482, 536
RsaNI GTAC 5 cut(s) 452, 471, 475, 481, 535
RseI CAYNNNNRTG 4 cut(s) 146, 177, 501, 827
SacI GAGCTC 1 cut(s) 15
SalI GTCGAC 1 cut(s) 772
SaqAI TTAA 5 cut(s) 86, 441, 671, 794, 1096
SatI GCNGC 2 cut(s) 570, 833
Sau3AI GATC 3 cut(s) 36, 507, 706
Sau96I GGNCC 1 cut(s) 248
ScrFI CCNGG 2 cut(s) 761, 935
SduI GDGCHC 4 cut(s) 15, 184, 730, 745
SfiI GGCCNNNNNGGCC 1 cut(s) 443
SmiMI CAYNNNNRTG 4 cut(s) 146, 177, 501, 827
SmlI CTYRAG 2 cut(s) 14, 79
SmoI CTYRAG 2 cut(s) 14, 79
SnaBI TACGTA 1 cut(s) 474
SphI GCATGC 1 cut(s) 879
Sse9I AATT 5 cut(s) 387, 426, 667, 684, 1047
SseBI AGGCCT 1 cut(s) 446
SsiI CCGC 1 cut(s) 908
SspMI CTAG 2 cut(s) 245, 512
SstI GAGCTC 1 cut(s) 15
StuI AGGCCT 1 cut(s) 446
StyD4I CCNGG 2 cut(s) 759, 933
StyI CCWWGG 2 cut(s) 244, 447
TaaI ACNGT 4 cut(s) 65, 76, 700, 747
TaiI ACGT 6 cut(s) 400, 476, 493, 733, 842, 854
TaqI TCGA 3 cut(s) 597, 680, 773
TasI AATT 5 cut(s) 387, 426, 667, 684, 1047
TatI WGTACW 2 cut(s) 480, 534
Tru1I TTAA 5 cut(s) 86, 441, 671, 794, 1096
Tru9I TTAA 5 cut(s) 86, 441, 671, 794, 1096
TscAI CASTG 1 cut(s) 982
TseFI GTSAC 4 cut(s) 65, 255, 400, 973
TseI GCWGC 2 cut(s) 569, 832
Tsp45I GTSAC 4 cut(s) 65, 255, 400, 973
TspDTI ATGAA 6 cut(s) 13, 130, 274, 633, 914, 1059
TspRI CASTG 1 cut(s) 982
VneI GTGCAC 2 cut(s) 180, 726
VspI ATTAAT 2 cut(s) 86, 794
XapI RAATTY 2 cut(s) 667, 684
XceI RCATGY 1 cut(s) 879
XmaJI CCTAGG 1 cut(s) 244
XmiI GTMKAC 2 cut(s) 702, 773
XspI CTAG 2 cut(s) 245, 512
Zsp2I ATGCAT 1 cut(s) 881
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.