RLG00000023150

Long-chain-alcohol

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0000676
Physical Location & Seq
Forward (+)
18899539 .. 18907985
8447 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023150

Sequence Viewer

Length: 675 bp
ATGGTGCCGACGATTTTGTTGAAGGTGGATAGTGGGTGCGACTGGTTCATACTTAATCTTGGAAATGGATTCATTCCAGTTAAGGCATTGCGTTTGGGTATGATCATTCATACCTACGAGTACAGACCACATTTGCACCTGTATGTGATCCTAGCCTTGTACTGTTGCCACATGTACTTGGGTCTAGAAATATTCTTTCCCCTTATCACGACTTCAACTCGAGTTGTTTTTGGTTTCGAGCTCGAGCAGCAGTCCAACAAGCCTTATCTCTCAACTTCGCTTCAAGACTTTTGGGGCCGTCGATGGAATTTAATGGTCACAAATATCTTGCGGCCAATAGTATACGATCTTACTCGGCGCTTGTGCACCCGTTTAGTTGGGGAACGGTGGGCCACGCTTTCGGCTTTGATGGCCACCTTTGCGGTATCTGGGTTAATGCACGAGGTTACTTATTACTATCTCACGCGCGTGCAGCCCACATGGGAAGTGATATGGTTTTTTGTGCTACATGGGGCTTACTTGGTGGTTGAGGTAGAGGTAAAGAAGGCGGTTGCCGGAAGGTGGAGGTTGCACCCGGTGGTTTCGGGGCTGTTAACTTTCGTGTTCTTAGCTGTGACCGGCAACTGGCTATTCTTTCCTAGTTGCTTAGGAATGGTGTTGATACAAGGGCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MBOAT_2

Protein Analysis

225

Amino Acids

25.92

Weight (kDa)

9.01

Isoelectric Point (pI)

49.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MBOAT_2 PF13813 84 - 168 9.6e-19 Membrane bound O-acyl transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 4
AccI GTMKAC 1 cut(s) 342
AccII CGCG 2 cut(s) 466, 468
AciI CCGC 3 cut(s) 331, 422, 548
AclWI GGATC 1 cut(s) 142
AcoI YGGCCR 2 cut(s) 332, 411
AcsI RAATTY 1 cut(s) 307
AdeI CACNNNGTG 1 cut(s) 577
AfaI GTAC 3 cut(s) 122, 161, 176
AfiI CCNNNNNNNGG 2 cut(s) 561, 624
AflIII ACRYGT 1 cut(s) 171
AgsI TTSAA 3 cut(s) 22, 216, 284
AleI CACNNNNGTG 1 cut(s) 467
AluBI AGCT 2 cut(s) 241, 611
AluI AGCT 2 cut(s) 241, 611
Alw21I GWGCWC 2 cut(s) 243, 368
Alw44I GTGCAC 1 cut(s) 364
AlwI GGATC 1 cut(s) 142
Ama87I CYCGRG 2 cut(s) 219, 242
AoxI GGCC 4 cut(s) 295, 332, 390, 411
ApaLI GTGCAC 1 cut(s) 364
ApeKI GCWGC 2 cut(s) 247, 472
ApoI RAATTY 1 cut(s) 307
AspLEI GCGC 2 cut(s) 360, 468
AspS9I GGNCC 2 cut(s) 295, 390
AsuC2I CCSGG 1 cut(s) 575
AvaI CYCGRG 2 cut(s) 219, 242
BaeGI GKGCMC 1 cut(s) 368
BalI TGGCCA 1 cut(s) 413
BanI GGYRCC 1 cut(s) 4
BanII GRGCYC 1 cut(s) 243
BauI CACGAG 1 cut(s) 440
Bbv12I GWGCWC 2 cut(s) 243, 368
BbvI GCAGC 2 cut(s) 259, 484
BccI CCATC 2 cut(s) 297, 403
BceAI ACGGC 1 cut(s) 282
BclI TGATCA 1 cut(s) 102
BcnI CCSGG 1 cut(s) 575
BfaI CTAG 3 cut(s) 152, 185, 639
BfoI RGCGCY 1 cut(s) 361
BisI GCNGC 3 cut(s) 248, 332, 473
BlsI GCNGC 3 cut(s) 249, 333, 474
Bme1390I CCNGG 1 cut(s) 575
BmeT110I CYCGRG 2 cut(s) 219, 242
BmgT120I GGNCC 2 cut(s) 295, 390
BmiI GGNNCC 2 cut(s) 6, 296
BmrFI CCNGG 1 cut(s) 575
Bpu10I CCTNAGC 1 cut(s) 646
BpuMI CCSGG 1 cut(s) 575
Bsc4I CCNNNNNNNGG 2 cut(s) 561, 624
Bse118I RCCGGY 1 cut(s) 617
Bse1I ACTGG 3 cut(s) 47, 77, 629
Bse3DI GCAATG 1 cut(s) 86
BseLI CCNNNNNNNGG 2 cut(s) 561, 624
BseMI GCAATG 1 cut(s) 86
BseNI ACTGG 3 cut(s) 47, 77, 629
BseSI GKGCMC 1 cut(s) 368
BseXI GCAGC 2 cut(s) 259, 484
BsgI GTGCAG 1 cut(s) 491
Bsh1236I CGCG 2 cut(s) 466, 468
BshFI GGCC 4 cut(s) 297, 334, 392, 413
BshNI GGYRCC 1 cut(s) 4
BsiHKAI GWGCWC 2 cut(s) 243, 368
BsiHKCI CYCGRG 2 cut(s) 219, 242
BsiSI CCGG 3 cut(s) 555, 575, 618
BslI CCNNNNNNNGG 2 cut(s) 561, 624
BsnI GGCC 4 cut(s) 297, 334, 392, 413
BsoBI CYCGRG 2 cut(s) 219, 242
Bsp1286I GDGCHC 2 cut(s) 243, 368
Bsp143I GATC 3 cut(s) 102, 147, 346
BspACI CCGC 3 cut(s) 331, 422, 548
BspANI GGCC 4 cut(s) 297, 334, 392, 413
BspFNI CGCG 2 cut(s) 466, 468
BspLI GGNNCC 2 cut(s) 6, 296
BspPI GGATC 1 cut(s) 142
BspT107I GGYRCC 1 cut(s) 4
BsrDI GCAATG 1 cut(s) 86
BsrFI RCCGGY 1 cut(s) 617
BsrI ACTGG 3 cut(s) 47, 77, 629
BssAI RCCGGY 1 cut(s) 617
BssMI GATC 3 cut(s) 102, 147, 346
BssNAI GTATAC 1 cut(s) 343
BssSI CACGAG 1 cut(s) 440
Bst1107I GTATAC 1 cut(s) 343
Bst2BI CACGAG 1 cut(s) 440
Bst4CI ACNGT 2 cut(s) 164, 387
BstC8I GCNNGC 1 cut(s) 470
BstDEI CTNAG 2 cut(s) 607, 646
BstFNI CGCG 2 cut(s) 466, 468
BstH2I RGCGCY 1 cut(s) 361
BstHHI GCGC 2 cut(s) 360, 468
BstKTI GATC 3 cut(s) 105, 150, 349
BstMBI GATC 3 cut(s) 102, 147, 346
BstMWI GCNNNNNNNGC 4 cut(s) 247, 410, 419, 472
BstNSI RCATGY 1 cut(s) 175
BstSCI CCNGG 1 cut(s) 573
BstSLI GKGCMC 1 cut(s) 368
BstUI CGCG 2 cut(s) 466, 468
BstV1I GCAGC 2 cut(s) 259, 484
BstZ17I GTATAC 1 cut(s) 343
BsuRI GGCC 4 cut(s) 297, 334, 392, 413
Cac8I GCNNGC 1 cut(s) 470
CfoI GCGC 2 cut(s) 360, 468
Cfr10I RCCGGY 1 cut(s) 617
Cfr13I GGNCC 2 cut(s) 295, 390
Csp6I GTAC 3 cut(s) 121, 160, 175
CviAII CATG 3 cut(s) 172, 480, 509
CviQI GTAC 3 cut(s) 121, 160, 175
DdeI CTNAG 2 cut(s) 607, 646
DpnI GATC 3 cut(s) 104, 149, 348
DpnII GATC 3 cut(s) 102, 147, 346
DraIII CACNNNGTG 1 cut(s) 577
EaeI YGGCCR 2 cut(s) 332, 411
Ecl136II GAGCTC 1 cut(s) 241
Eco24I GRGCYC 1 cut(s) 243
Eco53kI GAGCTC 1 cut(s) 241
Eco88I CYCGRG 2 cut(s) 219, 242
EcoICRI GAGCTC 1 cut(s) 241
EcoT38I GRGCYC 1 cut(s) 243
FaeI CATG 3 cut(s) 175, 483, 512
FaiI YATR 9 cut(s) 50, 101, 111, 144, 173, 343, 481, 493, 510
FatI CATG 3 cut(s) 171, 479, 508
FbaI TGATCA 1 cut(s) 102
FblI GTMKAC 1 cut(s) 342
Fnu4HI GCNGC 3 cut(s) 248, 332, 473
FriOI GRGCYC 1 cut(s) 243
Fsp4HI GCNGC 3 cut(s) 248, 332, 473
FspBI CTAG 3 cut(s) 152, 185, 639
GlaI GCGC 2 cut(s) 359, 467
GluI GCNGC 3 cut(s) 248, 332, 473
HaeII RGCGCY 1 cut(s) 361
HaeIII GGCC 4 cut(s) 297, 334, 392, 413
HapII CCGG 3 cut(s) 555, 575, 618
HhaI GCGC 2 cut(s) 360, 468
Hin1II CATG 3 cut(s) 175, 483, 512
Hin6I GCGC 2 cut(s) 358, 466
HinP1I GCGC 2 cut(s) 358, 466
HincII GTYRAC 1 cut(s) 594
HindII GTYRAC 1 cut(s) 594
HinfI GANTC 1 cut(s) 69
HpaI GTTAAC 1 cut(s) 594
HpaII CCGG 3 cut(s) 555, 575, 618
Hpy166II GTNNAC 3 cut(s) 343, 366, 594
Hpy188III TCNNGA 3 cut(s) 185, 208, 284
Hpy8I GTNNAC 3 cut(s) 343, 366, 594
Hpy99I CGWCG 2 cut(s) 13, 303
HpyAV CCTTC 3 cut(s) 16, 538, 552
HpyCH4III ACNGT 2 cut(s) 164, 387
HpyCH4V TGCA 5 cut(s) 136, 366, 439, 472, 571
HpyF10VI GCNNNNNNNGC 4 cut(s) 247, 410, 419, 472
HpyF3I CTNAG 2 cut(s) 607, 646
Hsp92II CATG 3 cut(s) 175, 483, 512
HspAI GCGC 2 cut(s) 358, 466
Ksp22I TGATCA 1 cut(s) 102
KspAI GTTAAC 1 cut(s) 594
Kzo9I GATC 3 cut(s) 102, 147, 346
LpnPI CCDG 8 cut(s) 28, 90, 152, 414, 568, 588, 610, 631
Lsp1109I GCAGC 2 cut(s) 259, 484
MaeI CTAG 3 cut(s) 152, 185, 639
MaeIII GTNAC 3 cut(s) 316, 445, 613
MalI GATC 3 cut(s) 104, 149, 348
MboI GATC 3 cut(s) 102, 147, 346
MhlI GDGCHC 2 cut(s) 243, 368
MlsI TGGCCA 1 cut(s) 413
MluCI AATT 1 cut(s) 307
MluNI TGGCCA 1 cut(s) 413
MmeI TCCRAC 1 cut(s) 279
MnlI CCTC 4 cut(s) 436, 523, 529, 558
Mox20I TGGCCA 1 cut(s) 413
MscI TGGCCA 1 cut(s) 413
MseI TTAA 5 cut(s) 54, 81, 311, 434, 593
MslI CAYNNNNRTG 2 cut(s) 141, 467
Msp20I TGGCCA 1 cut(s) 413
MspI CCGG 3 cut(s) 555, 575, 618
MspR9I CCNGG 1 cut(s) 575
MvnI CGCG 2 cut(s) 466, 468
MwoI GCNNNNNNNGC 4 cut(s) 247, 410, 419, 472
NciI CCSGG 1 cut(s) 575
NdeII GATC 3 cut(s) 102, 147, 346
NlaIII CATG 3 cut(s) 175, 483, 512
NlaIV GGNNCC 2 cut(s) 6, 296
NmeAIII GCCGAG 1 cut(s) 334
NmuCI GTSAC 2 cut(s) 316, 613
NspI RCATGY 1 cut(s) 175
OliI CACNNNNGTG 1 cut(s) 467
PaeR7I CTCGAG 2 cut(s) 219, 242
PciI ACATGT 1 cut(s) 171
PfeI GAWTC 1 cut(s) 69
PkrI GCNGC 3 cut(s) 249, 333, 474
PscI ACATGT 1 cut(s) 171
Psp124BI GAGCTC 1 cut(s) 243
PspN4I GGNNCC 2 cut(s) 6, 296
PspPI GGNCC 2 cut(s) 295, 390
PspXI VCTCGAGB 2 cut(s) 219, 242
RsaI GTAC 3 cut(s) 122, 161, 176
RsaNI GTAC 3 cut(s) 121, 160, 175
RseI CAYNNNNRTG 2 cut(s) 141, 467
SacI GAGCTC 1 cut(s) 243
SaqAI TTAA 5 cut(s) 54, 81, 311, 434, 593
SatI GCNGC 3 cut(s) 248, 332, 473
Sau3AI GATC 3 cut(s) 102, 147, 346
Sau96I GGNCC 2 cut(s) 295, 390
ScrFI CCNGG 1 cut(s) 575
SduI GDGCHC 2 cut(s) 243, 368
Sfr274I CTCGAG 2 cut(s) 219, 242
SlaI CTCGAG 2 cut(s) 219, 242
SmiMI CAYNNNNRTG 2 cut(s) 141, 467
SmlI CTYRAG 2 cut(s) 219, 242
SmoI CTYRAG 2 cut(s) 219, 242
Sse9I AATT 1 cut(s) 307
SsiI CCGC 3 cut(s) 331, 422, 548
SspI AATATT 1 cut(s) 192
SspMI CTAG 3 cut(s) 152, 185, 639
SstI GAGCTC 1 cut(s) 243
StyD4I CCNGG 1 cut(s) 573
TaaI ACNGT 2 cut(s) 164, 387
TaqI TCGA 4 cut(s) 220, 237, 243, 301
TasI AATT 1 cut(s) 307
TatI WGTACW 3 cut(s) 120, 159, 174
TauI GCSGC 1 cut(s) 334
TfiI GAWTC 1 cut(s) 69
Tru1I TTAA 5 cut(s) 54, 81, 311, 434, 593
Tru9I TTAA 5 cut(s) 54, 81, 311, 434, 593
TseFI GTSAC 2 cut(s) 316, 613
TseI GCWGC 2 cut(s) 247, 472
Tsp45I GTSAC 2 cut(s) 316, 613
TspDTI ATGAA 3 cut(s) 37, 61, 98
VneI GTGCAC 1 cut(s) 364
XapI RAATTY 1 cut(s) 307
XbaI TCTAGA 1 cut(s) 184
XceI RCATGY 1 cut(s) 175
XhoI CTCGAG 2 cut(s) 219, 242
XmiI GTMKAC 1 cut(s) 342
XspI CTAG 3 cut(s) 152, 185, 639
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.