Rmu_sc0000168.1_g000022

Long-chain-alcohol

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000168.1
OG0000676
Physical Location & Seq
Forward (+)
108059 .. 108621
563 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000168.1_g000022.1.cds

Sequence Viewer

Length: 438 bp
atgaaggcattgcttttgggtatgatcattcatacctacgagtacagaccacatttgcacccgtatgtgatcctagccttgtattgttgccacatgtacttgggtctagaaatattctttccccttatcgcgactccagctcgagctgtttttggttcgagctcgagccgcattggggaaccgtgggccatgctcttggctttgatggccacctttgtggtctgtgggttaatgcacgaggttacttattactatctcacgcgcgttctgcccatgtgggaagtgacgtggttttttatgctacatggggcttgcgtggcggttgaggcagaggttaagaaggcggttgccggtaggtggaggttgcacccggtggtttcggggttgttgacgtgtgtgttcttggctgttggtatgtctaaaagatgcacaacttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MBOAT_2

Protein Analysis

145

Amino Acids

16.42

Weight (kDa)

8.8

Isoelectric Point (pI)

42.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 131, 262, 264
AciI CCGC 3 cut(s) 169, 320, 344
AclWI GGATC 1 cut(s) 64
AcoI YGGCCR 1 cut(s) 207
AdeI CACNNNGTG 1 cut(s) 373
AfaI GTAC 2 cut(s) 44, 98
AfiI CCNNNNNNNGG 2 cut(s) 175, 357
AflIII ACRYGT 2 cut(s) 93, 392
AjiI CACGTC 2 cut(s) 288, 393
AleI CACNNNNGTG 1 cut(s) 215
AluBI AGCT 3 cut(s) 140, 146, 162
AluI AGCT 3 cut(s) 140, 146, 162
Alw21I GWGCWC 1 cut(s) 164
AlwI GGATC 1 cut(s) 64
Ama87I CYCGRG 2 cut(s) 141, 163
AoxI GGCC 2 cut(s) 186, 207
AspLEI GCGC 1 cut(s) 264
AspS9I GGNCC 1 cut(s) 186
AsuC2I CCSGG 1 cut(s) 371
AvaI CYCGRG 2 cut(s) 141, 163
BalI TGGCCA 1 cut(s) 209
BanII GRGCYC 1 cut(s) 164
BauI CACGAG 1 cut(s) 236
Bbv12I GWGCWC 1 cut(s) 164
BccI CCATC 1 cut(s) 199
BclI TGATCA 1 cut(s) 24
BcnI CCSGG 1 cut(s) 371
BfaI CTAG 2 cut(s) 74, 107
BisI GCNGC 1 cut(s) 169
BlsI GCNGC 1 cut(s) 170
Bme1390I CCNGG 1 cut(s) 371
BmeT110I CYCGRG 2 cut(s) 141, 163
BmgBI CACGTC 2 cut(s) 288, 393
BmgT120I GGNCC 1 cut(s) 186
BmiI GGNNCC 1 cut(s) 180
BmrFI CCNGG 1 cut(s) 371
BmsI GCATC 1 cut(s) 416
BpmI CTGGAG 1 cut(s) 120
BpuMI CCSGG 1 cut(s) 371
BsaJI CCNNGG 1 cut(s) 182
Bsc4I CCNNNNNNNGG 2 cut(s) 175, 357
Bse118I RCCGGY 1 cut(s) 350
Bse3DI GCAATG 1 cut(s) 8
BseDI CCNNGG 1 cut(s) 182
BseLI CCNNNNNNNGG 2 cut(s) 175, 357
BseMI GCAATG 1 cut(s) 8
Bsh1236I CGCG 3 cut(s) 131, 262, 264
BshFI GGCC 2 cut(s) 188, 209
BsiHKAI GWGCWC 1 cut(s) 164
BsiHKCI CYCGRG 2 cut(s) 141, 163
BsiSI CCGG 2 cut(s) 351, 371
BslI CCNNNNNNNGG 2 cut(s) 175, 357
BsnI GGCC 2 cut(s) 188, 209
BsoBI CYCGRG 2 cut(s) 141, 163
Bsp1286I GDGCHC 1 cut(s) 164
Bsp143I GATC 2 cut(s) 24, 69
Bsp68I TCGCGA 1 cut(s) 131
BspACI CCGC 3 cut(s) 169, 320, 344
BspANI GGCC 2 cut(s) 188, 209
BspFNI CGCG 3 cut(s) 131, 262, 264
BspLI GGNNCC 1 cut(s) 180
BspPI GGATC 1 cut(s) 64
BsrDI GCAATG 1 cut(s) 8
BsrFI RCCGGY 1 cut(s) 350
BssAI RCCGGY 1 cut(s) 350
BssECI CCNNGG 1 cut(s) 182
BssMI GATC 2 cut(s) 24, 69
BssSI CACGAG 1 cut(s) 236
Bst2BI CACGAG 1 cut(s) 236
Bst4CI ACNGT 1 cut(s) 183
BstC8I GCNNGC 1 cut(s) 313
BstDSI CCRYGG 1 cut(s) 182
BstFNI CGCG 3 cut(s) 131, 262, 264
BstHHI GCGC 1 cut(s) 264
BstKTI GATC 2 cut(s) 27, 72
BstMBI GATC 2 cut(s) 24, 69
BstMWI GCNNNNNNNGC 6 cut(s) 137, 168, 206, 268, 317, 326
BstNSI RCATGY 1 cut(s) 97
BstSCI CCNGG 1 cut(s) 369
BstUI CGCG 3 cut(s) 131, 262, 264
BstXI CCANNNNNNTGG 2 cut(s) 196, 217
BsuRI GGCC 2 cut(s) 188, 209
BtgI CCRYGG 1 cut(s) 182
BtrI CACGTC 2 cut(s) 288, 393
BtuMI TCGCGA 1 cut(s) 131
Cac8I GCNNGC 1 cut(s) 313
CfoI GCGC 1 cut(s) 264
Cfr10I RCCGGY 1 cut(s) 350
Cfr13I GGNCC 1 cut(s) 186
Csp6I GTAC 2 cut(s) 43, 97
CviAII CATG 4 cut(s) 94, 190, 274, 305
CviQI GTAC 2 cut(s) 43, 97
DpnI GATC 2 cut(s) 26, 71
DpnII GATC 2 cut(s) 24, 69
DraIII CACNNNGTG 1 cut(s) 373
EaeI YGGCCR 1 cut(s) 207
Ecl136II GAGCTC 1 cut(s) 162
Eco24I GRGCYC 1 cut(s) 164
Eco53kI GAGCTC 1 cut(s) 162
Eco88I CYCGRG 2 cut(s) 141, 163
EcoICRI GAGCTC 1 cut(s) 162
EcoT38I GRGCYC 1 cut(s) 164
FaeI CATG 4 cut(s) 97, 193, 277, 308
FaiI YATR 9 cut(s) 23, 33, 66, 95, 191, 275, 299, 306, 416
FatI CATG 4 cut(s) 93, 189, 273, 304
FbaI TGATCA 1 cut(s) 24
Fnu4HI GCNGC 1 cut(s) 169
FriOI GRGCYC 1 cut(s) 164
Fsp4HI GCNGC 1 cut(s) 169
FspBI CTAG 2 cut(s) 74, 107
GlaI GCGC 1 cut(s) 263
GluI GCNGC 1 cut(s) 169
GsuI CTGGAG 1 cut(s) 120
HaeIII GGCC 2 cut(s) 188, 209
HapII CCGG 2 cut(s) 351, 371
HhaI GCGC 1 cut(s) 264
Hin1II CATG 4 cut(s) 97, 193, 277, 308
Hin6I GCGC 1 cut(s) 262
HinP1I GCGC 1 cut(s) 262
HincII GTYRAC 1 cut(s) 390
HindII GTYRAC 1 cut(s) 390
HinfI GANTC 1 cut(s) 133
HpaII CCGG 2 cut(s) 351, 371
Hpy166II GTNNAC 1 cut(s) 390
Hpy188III TCNNGA 2 cut(s) 107, 130
Hpy8I GTNNAC 1 cut(s) 390
HpyAV CCTTC 1 cut(s) 334
HpyCH4III ACNGT 1 cut(s) 183
HpyCH4IV ACGT 2 cut(s) 287, 392
HpyCH4V TGCA 4 cut(s) 58, 235, 367, 429
HpyF10VI GCNNNNNNNGC 6 cut(s) 137, 168, 206, 268, 317, 326
HpySE526I ACGT 2 cut(s) 287, 392
Hsp92II CATG 4 cut(s) 97, 193, 277, 308
HspAI GCGC 1 cut(s) 262
Ksp22I TGATCA 1 cut(s) 24
Kzo9I GATC 2 cut(s) 24, 69
LpnPI CCDG 3 cut(s) 150, 364, 384
LweI GCATC 1 cut(s) 416
MaeI CTAG 2 cut(s) 74, 107
MaeII ACGT 2 cut(s) 287, 392
MaeIII GTNAC 2 cut(s) 241, 283
MalI GATC 2 cut(s) 26, 71
MboI GATC 2 cut(s) 24, 69
MhlI GDGCHC 1 cut(s) 164
MlsI TGGCCA 1 cut(s) 209
MluNI TGGCCA 1 cut(s) 209
MlyI GAGTC 1 cut(s) 127
MnlI CCTC 4 cut(s) 232, 319, 325, 354
Mox20I TGGCCA 1 cut(s) 209
MscI TGGCCA 1 cut(s) 209
MseI TTAA 3 cut(s) 230, 336, 436
MslI CAYNNNNRTG 2 cut(s) 63, 215
Msp20I TGGCCA 1 cut(s) 209
MspI CCGG 2 cut(s) 351, 371
MspR9I CCNGG 1 cut(s) 371
MvnI CGCG 3 cut(s) 131, 262, 264
MwoI GCNNNNNNNGC 6 cut(s) 137, 168, 206, 268, 317, 326
NciI CCSGG 1 cut(s) 371
NdeII GATC 2 cut(s) 24, 69
NlaIII CATG 4 cut(s) 97, 193, 277, 308
NlaIV GGNNCC 1 cut(s) 180
NmuCI GTSAC 1 cut(s) 283
NruI TCGCGA 1 cut(s) 131
NspI RCATGY 1 cut(s) 97
OliI CACNNNNGTG 1 cut(s) 215
PaeR7I CTCGAG 2 cut(s) 141, 163
PciI ACATGT 1 cut(s) 93
PkrI GCNGC 1 cut(s) 170
PleI GAGTC 1 cut(s) 127
PpsI GAGTC 1 cut(s) 127
PscI ACATGT 1 cut(s) 93
Psp124BI GAGCTC 1 cut(s) 164
PspN4I GGNNCC 1 cut(s) 180
PspPI GGNCC 1 cut(s) 186
PspXI VCTCGAGB 2 cut(s) 141, 163
RruI TCGCGA 1 cut(s) 131
RsaI GTAC 2 cut(s) 44, 98
RsaNI GTAC 2 cut(s) 43, 97
RseI CAYNNNNRTG 2 cut(s) 63, 215
SacI GAGCTC 1 cut(s) 164
SaqAI TTAA 3 cut(s) 230, 336, 436
SatI GCNGC 1 cut(s) 169
Sau3AI GATC 2 cut(s) 24, 69
Sau96I GGNCC 1 cut(s) 186
SchI GAGTC 1 cut(s) 127
ScrFI CCNGG 1 cut(s) 371
SduI GDGCHC 1 cut(s) 164
SfaNI GCATC 1 cut(s) 416
Sfr274I CTCGAG 2 cut(s) 141, 163
SlaI CTCGAG 2 cut(s) 141, 163
SmiMI CAYNNNNRTG 2 cut(s) 63, 215
SmlI CTYRAG 2 cut(s) 141, 163
SmoI CTYRAG 2 cut(s) 141, 163
SsiI CCGC 3 cut(s) 169, 320, 344
SspI AATATT 1 cut(s) 114
SspMI CTAG 2 cut(s) 74, 107
SstI GAGCTC 1 cut(s) 164
StyD4I CCNGG 1 cut(s) 369
TaaI ACNGT 1 cut(s) 183
TaiI ACGT 2 cut(s) 290, 395
TaqI TCGA 3 cut(s) 142, 158, 164
TatI WGTACW 2 cut(s) 42, 96
TauI GCSGC 1 cut(s) 171
Tru1I TTAA 3 cut(s) 230, 336, 436
Tru9I TTAA 3 cut(s) 230, 336, 436
TseFI GTSAC 1 cut(s) 283
Tsp45I GTSAC 1 cut(s) 283
TspDTI ATGAA 2 cut(s) 17, 20
XbaI TCTAGA 1 cut(s) 106
XceI RCATGY 1 cut(s) 97
XhoI CTCGAG 2 cut(s) 141, 163
XspI CTAG 2 cut(s) 74, 107
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.