RchiOBHm_Chr2g0123061

Long-chain-alcohol

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000676
Physical Location & Seq
Forward (+)
36205032 .. 36205691
660 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ49538

Sequence Viewer

Length: 660 bp
ATGGAGGGTGAGCTCAAGAACTTCATCAAGGTATGGATCGCAGCCATTTTATGTCTATCTTACTGTCACTACATAGTCTCAAGATTAATCCCAAAGGGTTGGCTGAGGCTCATCTCTCTCCTTCCTGTCTTCTACCTCTTCATCTCCATGCCCCTAAATCTCCATTCCTTCCATCTTTGTGCACTCACAACTTTCTTCTTAGTTTGGCTTGGCCTCTTCAAGCTCCTCCTCTTCTCCTTTGGGCTAGGCCTTTTGTCACCACCCCCACCATCAGTCTTCCATTTCATCTCCATAGCTTGCCTCCCCATCAAAATCAAACAAACATCACCTCCAAAATCACTCCTAAATCCCAGAACCACTCAAAAACCCAAAAAATCTGTGAATCCAATTGGTCAGCTTGTCACAAAGGGACTGCCCAATAAGTCAATTTTGTTGGCCGTTAAGGCCTTGGTCTTGGGTGTGGTTATTTGTATGTACGAGTACAAATCACGTTTACACCCGTATGTGATTATAGTCTTGTGTTGTTGCCATGTGTACTTAGGAGTAGAAATAGTCCTATTTTTGTGTGCAGCCCCAGCTCGAGCCATTTTTGAGTTCGAGCTGGAACATCAGTTCAATGAACCTTGCCTCTCCACTTCGCTTCAAGACTTTTGGGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MBOAT_2

Protein Analysis

219

Amino Acids

24.76

Weight (kDa)

9.2

Isoelectric Point (pI)

40.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 44
AcoI YGGCCR 1 cut(s) 435
AfaI GTAC 3 cut(s) 476, 482, 536
AgsI TTSAA 3 cut(s) 220, 616, 644
AloI GAACNNNNNNTCC 2 cut(s) 596, 628
AluBI AGCT 6 cut(s) 13, 223, 296, 397, 578, 601
AluI AGCT 6 cut(s) 13, 223, 296, 397, 578, 601
Alw21I GWGCWC 2 cut(s) 15, 184
Alw26I GTCTC 1 cut(s) 82
Alw44I GTGCAC 1 cut(s) 180
AlwI GGATC 1 cut(s) 44
Ama87I CYCGRG 1 cut(s) 579
AoxI GGCC 4 cut(s) 211, 247, 435, 444
ApaLI GTGCAC 1 cut(s) 180
ApeKI GCWGC 2 cut(s) 41, 569
AseI ATTAAT 1 cut(s) 86
AsuHPI GGTGA 3 cut(s) 20, 249, 318
AvaI CYCGRG 1 cut(s) 579
BaeGI GKGCMC 1 cut(s) 184
BanII GRGCYC 1 cut(s) 15
BbsI GAAGAC 2 cut(s) 121, 268
Bbv12I GWGCWC 2 cut(s) 15, 184
BbvCI CCTCAGC 1 cut(s) 104
BbvI GCAGC 2 cut(s) 53, 581
BccI CCATC 3 cut(s) 180, 277, 314
BceAI ACGGC 1 cut(s) 422
BcoDI GTCTC 1 cut(s) 82
BfaI CTAG 2 cut(s) 245, 658
BglI GCCNNNNNGGC 1 cut(s) 443
BisI GCNGC 2 cut(s) 42, 570
BlsI GCNGC 2 cut(s) 43, 571
BmeT110I CYCGRG 1 cut(s) 579
BpiI GAAGAC 2 cut(s) 121, 268
Bpu10I CCTNAGC 1 cut(s) 104
BpuEI CTTGAG 1 cut(s) 64
BsaJI CCNNGG 1 cut(s) 447
BsaXI ACNNNNNCTCC 2 cut(s) 313, 343
BseDI CCNNGG 1 cut(s) 447
BseMII CTCAG 1 cut(s) 95
BseRI GAGGAG 2 cut(s) 215, 218
BseSI GKGCMC 1 cut(s) 184
BseXI GCAGC 2 cut(s) 53, 581
BseYI CCCAGC 1 cut(s) 574
BsgI GTGCAG 1 cut(s) 588
BshFI GGCC 4 cut(s) 213, 249, 437, 446
BsiHKAI GWGCWC 2 cut(s) 15, 184
BsiHKCI CYCGRG 1 cut(s) 579
BslFI GGGAC 1 cut(s) 423
BsmAI GTCTC 1 cut(s) 82
BsmFI GGGAC 1 cut(s) 423
BsnI GGCC 4 cut(s) 213, 249, 437, 446
BsoBI CYCGRG 1 cut(s) 579
Bsp1286I GDGCHC 2 cut(s) 15, 184
Bsp143I GATC 1 cut(s) 36
BspANI GGCC 4 cut(s) 213, 249, 437, 446
BspCNI CTCAG 1 cut(s) 96
BspPI GGATC 1 cut(s) 44
BssECI CCNNGG 1 cut(s) 447
BssMI GATC 1 cut(s) 36
BssT1I CCWWGG 1 cut(s) 447
Bst4CI ACNGT 1 cut(s) 65
Bst6I CTCTTC 3 cut(s) 143, 221, 236
BstC8I GCNNGC 1 cut(s) 298
BstDEI CTNAG 3 cut(s) 104, 199, 538
BstKTI GATC 1 cut(s) 39
BstMAI GTCTC 1 cut(s) 82
BstMBI GATC 1 cut(s) 36
BstMWI GCNNNNNNNGC 2 cut(s) 443, 575
BstSLI GKGCMC 1 cut(s) 184
BstV1I GCAGC 2 cut(s) 53, 581
BstV2I GAAGAC 2 cut(s) 121, 268
BstXI CCANNNNNNTGG 1 cut(s) 99
BsuRI GGCC 4 cut(s) 213, 249, 437, 446
Cac8I GCNNGC 1 cut(s) 298
Csp6I GTAC 3 cut(s) 475, 481, 535
CviAII CATG 2 cut(s) 148, 530
CviQI GTAC 3 cut(s) 475, 481, 535
DdeI CTNAG 3 cut(s) 104, 199, 538
DpnI GATC 1 cut(s) 38
DpnII GATC 1 cut(s) 36
EaeI YGGCCR 1 cut(s) 435
Eam1104I CTCTTC 3 cut(s) 143, 221, 236
EarI CTCTTC 3 cut(s) 143, 221, 236
Ecl136II GAGCTC 1 cut(s) 13
Eco130I CCWWGG 1 cut(s) 447
Eco147I AGGCCT 2 cut(s) 249, 446
Eco24I GRGCYC 1 cut(s) 15
Eco53kI GAGCTC 1 cut(s) 13
Eco88I CYCGRG 1 cut(s) 579
EcoICRI GAGCTC 1 cut(s) 13
EcoT14I CCWWGG 1 cut(s) 447
EcoT38I GRGCYC 1 cut(s) 15
ErhI CCWWGG 1 cut(s) 447
FaeI CATG 2 cut(s) 151, 533
FaiI YATR 9 cut(s) 34, 52, 74, 149, 293, 473, 504, 512, 531
FaqI GGGAC 1 cut(s) 423
FatI CATG 2 cut(s) 147, 529
Fnu4HI GCNGC 2 cut(s) 42, 570
FriOI GRGCYC 1 cut(s) 15
Fsp4HI GCNGC 2 cut(s) 42, 570
FspBI CTAG 2 cut(s) 245, 658
GluI GCNGC 2 cut(s) 42, 570
GsaI CCCAGC 1 cut(s) 578
HaeIII GGCC 4 cut(s) 213, 249, 437, 446
Hin1II CATG 2 cut(s) 151, 533
HinfI GANTC 1 cut(s) 382
HphI GGTGA 3 cut(s) 20, 249, 318
Hpy166II GTNNAC 3 cut(s) 182, 494, 535
Hpy188III TCNNGA 3 cut(s) 16, 81, 644
Hpy8I GTNNAC 3 cut(s) 182, 494, 535
HpyAV CCTTC 2 cut(s) 131, 178
HpyCH4III ACNGT 1 cut(s) 65
HpyCH4IV ACGT 1 cut(s) 490
HpyCH4V TGCA 2 cut(s) 182, 569
HpyF10VI GCNNNNNNNGC 2 cut(s) 443, 575
HpyF3I CTNAG 3 cut(s) 104, 199, 538
HpySE526I ACGT 1 cut(s) 490
Hsp92II CATG 2 cut(s) 151, 533
Kzo9I GATC 1 cut(s) 36
LmnI GCTCC 1 cut(s) 228
LpnPI CCDG 4 cut(s) 138, 364, 587, 588
Lsp1109I GCAGC 2 cut(s) 53, 581
MaeI CTAG 2 cut(s) 245, 658
MaeII ACGT 1 cut(s) 490
MaeIII GTNAC 3 cut(s) 65, 255, 400
MalI GATC 1 cut(s) 38
MboI GATC 1 cut(s) 36
MboII GAAGA 6 cut(s) 121, 130, 187, 208, 223, 268
MfeI CAATTG 1 cut(s) 387
MhlI GDGCHC 2 cut(s) 15, 184
MluCI AATT 2 cut(s) 387, 426
MnlI CCTC 8 cut(s) 99, 146, 224, 236, 239, 311, 339, 638
MseI TTAA 2 cut(s) 86, 441
MslI CAYNNNNRTG 3 cut(s) 146, 177, 501
MunI CAATTG 1 cut(s) 387
MwoI GCNNNNNNNGC 2 cut(s) 443, 575
NdeII GATC 1 cut(s) 36
NlaIII CATG 2 cut(s) 151, 533
NmuCI GTSAC 3 cut(s) 65, 255, 400
PaeR7I CTCGAG 1 cut(s) 579
PceI AGGCCT 2 cut(s) 249, 446
PfeI GAWTC 1 cut(s) 382
PkrI GCNGC 2 cut(s) 43, 571
PshBI ATTAAT 1 cut(s) 86
Psp124BI GAGCTC 1 cut(s) 15
PspFI CCCAGC 1 cut(s) 574
PspXI VCTCGAGB 1 cut(s) 579
RsaI GTAC 3 cut(s) 476, 482, 536
RsaNI GTAC 3 cut(s) 475, 481, 535
RseI CAYNNNNRTG 3 cut(s) 146, 177, 501
SacI GAGCTC 1 cut(s) 15
SaqAI TTAA 2 cut(s) 86, 441
SatI GCNGC 2 cut(s) 42, 570
Sau3AI GATC 1 cut(s) 36
SduI GDGCHC 2 cut(s) 15, 184
SfiI GGCCNNNNNGGCC 1 cut(s) 443
Sfr274I CTCGAG 1 cut(s) 579
SlaI CTCGAG 1 cut(s) 579
SmiMI CAYNNNNRTG 3 cut(s) 146, 177, 501
SmlI CTYRAG 3 cut(s) 14, 79, 579
SmoI CTYRAG 3 cut(s) 14, 79, 579
Sse9I AATT 2 cut(s) 387, 426
SseBI AGGCCT 2 cut(s) 249, 446
SspMI CTAG 2 cut(s) 245, 658
SstI GAGCTC 1 cut(s) 15
StuI AGGCCT 2 cut(s) 249, 446
StyI CCWWGG 1 cut(s) 447
TaaI ACNGT 1 cut(s) 65
TaiI ACGT 1 cut(s) 493
TaqI TCGA 2 cut(s) 580, 597
TasI AATT 2 cut(s) 387, 426
TatI WGTACW 2 cut(s) 480, 534
TfiI GAWTC 1 cut(s) 382
Tru1I TTAA 2 cut(s) 86, 441
Tru9I TTAA 2 cut(s) 86, 441
TseFI GTSAC 3 cut(s) 65, 255, 400
TseI GCWGC 2 cut(s) 41, 569
Tsp45I GTSAC 3 cut(s) 65, 255, 400
TspDTI ATGAA 4 cut(s) 13, 130, 274, 633
VneI GTGCAC 1 cut(s) 180
VspI ATTAAT 1 cut(s) 86
XhoI CTCGAG 1 cut(s) 579
XspI CTAG 2 cut(s) 245, 658
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.