AT5G55380

Membrane bound O-acyl transferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0000676
Physical Location & Seq
Reverse (-)
22446624 .. 22447953
1330 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G55380.1

Sequence Viewer

Length: 1026 bp
ATGGAAGAAAAGTTTAGAAACTTAATCGAGGTATGGATCTCTGCTTTAATCTCTCTATCTTACTGTTATTACATATCGTCTAAACTCTCCAAAGGTGTTCTTCGTCTCCTCTCTATTCTTCCAGTCTGCATTCTGTTTCTTGTTCTTCCTCTGTTCCTCTCTTGTGTGCACTTTTGCGCCATTTCAGTTCTTTTTCTTTCATGGCTTGCAAACTTTAAGCTTCTTCTATTTGCCTTTGATGAGGGACCTTTGTTCCCACTTCCTCCAAAACTCTCCCGTTTCATCTGCTTCGCTTGTTTACCCATCAAAATCAGACAAGACCCTTCTCCAAATGCGATACCAAATCTTCATCCTAAACCTATGCCTAAATGGGTTTTGGCTGTTAAAATTTTGGTCTTGGGCGTCTTGTTACATGTTTATGAATACAGGGATGGTTTGCCTCGGTTTGTTGTCTTGGCTCTCTATTGTCTCCATATTTACCTTGAGGTAGAACTTGTCTTGGTCTTTGTTGGAGCCGTGGTATCTACTCTTCTTGGGTGTAACATCGAGCCGGTGTTCAATGAGCCCTACCTAGCTACCTCCCTACAAGACTTCTGGAGCCGCAGATGGAACCTCATGGTTTCAGCCGTCCTACGCTCAACCGTTCACATTCCGGTTCAGCGTTTTTTCAAACGCATACTCAGTCCAGACGGGGCTATGTTTGCTGGGGTCATGGCATCGTTCTTTGTCTCAGGCTTGATGCATGAGCTGCTCTACTTTTACATGATCCGTAAGCCTCCAACTTGGGAAGTCACTTGTTTCTTTGTGTTGCATGGTGCTGCCACTGCCACTGAGATAGCGGTGAAGAGAACACAATGGTTGAGGCCACCGCACCGGGCTGTCTCTGGTCTTGTAGTTCTGACGTTTGTGAGTGTGACGGGCGTTTGGCTATTCCTCGCTCAAGTGCTGAGAAACAATGTCCATGAGAAAGCGATTGGAGAATGTTTATTGGTTCTTGACCTAGCCAAGTTATTCACTTCTTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MBOAT_2

Protein Analysis

341

Amino Acids

38.73

Weight (kDa)

9.16

Isoelectric Point (pI)

50.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MBOAT_2 PF13813 183 - 269 1.8e-18 Membrane bound O-acyl transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 601, 839, 869
AclWI GGATC 2 cut(s) 44, 760
AcsI RAATTY 1 cut(s) 387
AcyI GRCGYC 1 cut(s) 402
AflIII ACRYGT 1 cut(s) 412
AgsI TTSAA 2 cut(s) 559, 670
AluBI AGCT 3 cut(s) 220, 575, 748
AluI AGCT 3 cut(s) 220, 575, 748
Alw21I GWGCWC 1 cut(s) 171
Alw26I GTCTC 4 cut(s) 110, 473, 733, 886
Alw44I GTGCAC 1 cut(s) 167
AlwI GGATC 2 cut(s) 44, 760
AoxI GGCC 1 cut(s) 863
ApaLI GTGCAC 1 cut(s) 167
ApeKI GCWGC 2 cut(s) 748, 818
ApoI RAATTY 1 cut(s) 387
AspLEI GCGC 1 cut(s) 179
AspS9I GGNCC 1 cut(s) 245
AsuC2I CCSGG 1 cut(s) 875
AsuHPI GGTGA 1 cut(s) 853
AvaII GGWCC 1 cut(s) 245
BaeGI GKGCMC 1 cut(s) 171
BanII GRGCYC 1 cut(s) 567
BarI GAAGNNNNNNTAC 2 cut(s) 513, 545
Bbv12I GWGCWC 1 cut(s) 171
BbvI GCAGC 2 cut(s) 735, 805
BccI CCATC 3 cut(s) 311, 425, 600
BceAI ACGGC 2 cut(s) 500, 611
BcnI CCSGG 1 cut(s) 875
BcoDI GTCTC 4 cut(s) 110, 473, 733, 886
BfaI CTAG 2 cut(s) 572, 1001
BisI GCNGC 3 cut(s) 601, 749, 819
BlsI GCNGC 3 cut(s) 602, 750, 820
Bme1390I CCNGG 1 cut(s) 875
Bme18I GGWCC 1 cut(s) 245
BmgT120I GGNCC 1 cut(s) 245
BmiI GGNNCC 4 cut(s) 246, 514, 599, 611
BmrFI CCNGG 1 cut(s) 875
BmsI GCATC 2 cut(s) 725, 729
BpmI CTGGAG 1 cut(s) 616
BpuEI CTTGAG 2 cut(s) 503, 924
BpuMI CCSGG 1 cut(s) 875
BsaHI GRCGYC 1 cut(s) 402
BsaJI CCNNGG 2 cut(s) 440, 516
BsaWI WCCGGW 1 cut(s) 652
BsaXI ACNNNNNCTCC 2 cut(s) 504, 534
Bse118I RCCGGY 1 cut(s) 550
Bse1I ACTGG 1 cut(s) 122
BseDI CCNNGG 2 cut(s) 440, 516
BseGI GGATG 2 cut(s) 349, 436
BseMII CTCAG 4 cut(s) 694, 744, 822, 938
BseNI ACTGG 1 cut(s) 122
BseRI GAGGAG 1 cut(s) 98
BseSI GKGCMC 1 cut(s) 171
BseXI GCAGC 2 cut(s) 735, 805
BseYI CCCAGC 1 cut(s) 704
BshFI GGCC 1 cut(s) 865
BsiHKAI GWGCWC 1 cut(s) 171
BsiSI CCGG 3 cut(s) 551, 653, 874
BslFI GGGAC 1 cut(s) 258
BsmAI GTCTC 4 cut(s) 110, 473, 733, 886
BsmBI CGTCTC 1 cut(s) 110
BsmFI GGGAC 1 cut(s) 258
BsmI GAATGC 1 cut(s) 129
BsnI GGCC 1 cut(s) 865
Bsp1286I GDGCHC 2 cut(s) 171, 567
Bsp143I GATC 2 cut(s) 36, 765
BspACI CCGC 3 cut(s) 601, 839, 869
BspANI GGCC 1 cut(s) 865
BspCNI CTCAG 4 cut(s) 693, 743, 823, 939
BspHI TCATGA 1 cut(s) 1022
BspLI GGNNCC 4 cut(s) 246, 514, 599, 611
BspPI GGATC 2 cut(s) 44, 760
BsrFI RCCGGY 1 cut(s) 550
BsrI ACTGG 1 cut(s) 122
BssAI RCCGGY 1 cut(s) 550
BssECI CCNNGG 2 cut(s) 440, 516
BssMI GATC 2 cut(s) 36, 765
BssNI GRCGYC 1 cut(s) 402
Bst4CI ACNGT 2 cut(s) 65, 643
Bst6I CTCTTC 2 cut(s) 534, 839
BstACI GRCGYC 1 cut(s) 402
BstAPI GCANNNNNTGC 1 cut(s) 748
BstC8I GCNNGC 1 cut(s) 207
BstDEI CTNAG 4 cut(s) 680, 730, 831, 947
BstDSI CCRYGG 1 cut(s) 516
BstF5I GGATG 2 cut(s) 349, 436
BstHHI GCGC 1 cut(s) 179
BstKTI GATC 2 cut(s) 39, 768
BstMAI GTCTC 4 cut(s) 110, 473, 733, 886
BstMBI GATC 2 cut(s) 36, 765
BstMWI GCNNNNNNNGC 3 cut(s) 701, 748, 824
BstNSI RCATGY 1 cut(s) 416
BstSCI CCNGG 1 cut(s) 873
BstSLI GKGCMC 1 cut(s) 171
BstV1I GCAGC 2 cut(s) 735, 805
BstX2I RGATCY 1 cut(s) 36
BstYI RGATCY 1 cut(s) 36
BsuRI GGCC 1 cut(s) 865
BtgI CCRYGG 1 cut(s) 516
BtsCI GGATG 2 cut(s) 349, 436
BtsI GCAGTG 1 cut(s) 822
BtsIMutI CAGTG 2 cut(s) 822, 828
Cac8I GCNNGC 1 cut(s) 207
CciI TCATGA 1 cut(s) 1022
CfoI GCGC 1 cut(s) 179
Cfr10I RCCGGY 1 cut(s) 550
Cfr13I GGNCC 1 cut(s) 245
CseI GACGC 1 cut(s) 391
CviAII CATG 9 cut(s) 201, 413, 616, 712, 743, 763, 812, 962, 1023
DdeI CTNAG 4 cut(s) 680, 730, 831, 947
DpnI GATC 2 cut(s) 38, 767
DpnII GATC 2 cut(s) 36, 765
Eam1104I CTCTTC 2 cut(s) 534, 839
EarI CTCTTC 2 cut(s) 534, 839
Eco24I GRGCYC 1 cut(s) 567
Eco47I GGWCC 1 cut(s) 245
EcoO109I RGGNCCY 1 cut(s) 245
EcoT22I ATGCAT 1 cut(s) 744
EcoT38I GRGCYC 1 cut(s) 567
Esp3I CGTCTC 1 cut(s) 110
FaeI CATG 9 cut(s) 204, 416, 619, 715, 746, 766, 815, 965, 1026
FalI AAGNNNNNCTT 2 cut(s) 84, 116
FaqI GGGAC 1 cut(s) 258
FatI CATG 9 cut(s) 200, 412, 615, 711, 742, 762, 811, 961, 1022
Fnu4HI GCNGC 3 cut(s) 601, 749, 819
FokI GGATG 2 cut(s) 336, 443
FriOI GRGCYC 1 cut(s) 567
Fsp4HI GCNGC 3 cut(s) 601, 749, 819
FspBI CTAG 2 cut(s) 572, 1001
GlaI GCGC 1 cut(s) 178
GluI GCNGC 3 cut(s) 601, 749, 819
GsaI CCCAGC 1 cut(s) 708
GsuI CTGGAG 1 cut(s) 616
HaeIII GGCC 1 cut(s) 865
HapII CCGG 3 cut(s) 551, 653, 874
HgaI GACGC 1 cut(s) 391
HhaI GCGC 1 cut(s) 179
Hin1I GRCGYC 1 cut(s) 402
Hin1II CATG 9 cut(s) 204, 416, 619, 715, 746, 766, 815, 965, 1026
Hin6I GCGC 1 cut(s) 177
HinP1I GCGC 1 cut(s) 177
HindIII AAGCTT 1 cut(s) 218
HpaII CCGG 3 cut(s) 551, 653, 874
HphI GGTGA 1 cut(s) 853
Hpy166II GTNNAC 3 cut(s) 169, 299, 646
Hpy188I TCNGA 2 cut(s) 314, 900
Hpy188III TCNNGA 4 cut(s) 595, 686, 995, 1023
Hpy8I GTNNAC 3 cut(s) 169, 299, 646
HpyAV CCTTC 1 cut(s) 333
HpyCH4III ACNGT 2 cut(s) 65, 643
HpyCH4IV ACGT 1 cut(s) 902
HpyCH4V TGCA 5 cut(s) 129, 169, 209, 742, 811
HpyF10VI GCNNNNNNNGC 3 cut(s) 701, 748, 824
HpyF3I CTNAG 4 cut(s) 680, 730, 831, 947
HpySE526I ACGT 1 cut(s) 902
Hsp92I GRCGYC 1 cut(s) 402
Hsp92II CATG 9 cut(s) 204, 416, 619, 715, 746, 766, 815, 965, 1026
HspAI GCGC 1 cut(s) 177
Kzo9I GATC 2 cut(s) 36, 765
LmnI GCTCC 2 cut(s) 512, 597
Lsp1109I GCAGC 2 cut(s) 735, 805
LweI GCATC 2 cut(s) 725, 729
MaeI CTAG 2 cut(s) 572, 1001
MaeII ACGT 1 cut(s) 902
MaeIII GTNAC 4 cut(s) 408, 539, 790, 913
MalI GATC 2 cut(s) 38, 767
MboI GATC 2 cut(s) 36, 765
MboII GAAGA 9 cut(s) 17, 92, 110, 137, 215, 338, 521, 856, 1011
MflI RGATCY 1 cut(s) 36
MhlI GDGCHC 2 cut(s) 171, 567
MluCI AATT 1 cut(s) 387
MmeI TCCRAC 2 cut(s) 490, 803
Mph1103I ATGCAT 1 cut(s) 744
MseI TTAA 4 cut(s) 23, 47, 216, 384
MslI CAYNNNNRTG 1 cut(s) 417
MspI CCGG 3 cut(s) 551, 653, 874
MspR9I CCNGG 1 cut(s) 875
Mva1269I GAATGC 1 cut(s) 129
MwoI GCNNNNNNNGC 3 cut(s) 701, 748, 824
NciI CCSGG 1 cut(s) 875
NdeII GATC 2 cut(s) 36, 765
NlaIII CATG 9 cut(s) 204, 416, 619, 715, 746, 766, 815, 965, 1026
NlaIV GGNNCC 4 cut(s) 246, 514, 599, 611
NmuCI GTSAC 2 cut(s) 790, 913
NsiI ATGCAT 1 cut(s) 744
NspI RCATGY 1 cut(s) 416
PagI TCATGA 1 cut(s) 1022
PciI ACATGT 1 cut(s) 412
PctI GAATGC 1 cut(s) 129
PkrI GCNGC 3 cut(s) 602, 750, 820
PpuMI RGGWCCY 1 cut(s) 245
PscI ACATGT 1 cut(s) 412
Psp5II RGGWCCY 1 cut(s) 245
PspFI CCCAGC 1 cut(s) 704
PspN4I GGNNCC 4 cut(s) 246, 514, 599, 611
PspPI GGNCC 1 cut(s) 245
PspPPI RGGWCCY 1 cut(s) 245
PsuI RGATCY 1 cut(s) 36
RseI CAYNNNNRTG 1 cut(s) 417
SaqAI TTAA 4 cut(s) 23, 47, 216, 384
SatI GCNGC 3 cut(s) 601, 749, 819
Sau3AI GATC 2 cut(s) 36, 765
Sau96I GGNCC 1 cut(s) 245
ScrFI CCNGG 1 cut(s) 875
SduI GDGCHC 2 cut(s) 171, 567
SfaNI GCATC 2 cut(s) 725, 729
SinI GGWCC 1 cut(s) 245
SmiMI CAYNNNNRTG 1 cut(s) 417
SmlI CTYRAG 2 cut(s) 482, 939
SmoI CTYRAG 2 cut(s) 482, 939
Sse9I AATT 1 cut(s) 387
SsiI CCGC 3 cut(s) 601, 839, 869
SspMI CTAG 2 cut(s) 572, 1001
StyD4I CCNGG 1 cut(s) 873
TaaI ACNGT 2 cut(s) 65, 643
TaiI ACGT 1 cut(s) 905
TaqI TCGA 2 cut(s) 27, 546
TasI AATT 1 cut(s) 387
TauI GCSGC 1 cut(s) 603
Tru1I TTAA 4 cut(s) 23, 47, 216, 384
Tru9I TTAA 4 cut(s) 23, 47, 216, 384
TscAI CASTG 2 cut(s) 829, 835
TseFI GTSAC 2 cut(s) 790, 913
TseI GCWGC 2 cut(s) 748, 818
Tsp45I GTSAC 2 cut(s) 790, 913
TspDTI ATGAA 5 cut(s) 189, 271, 338, 435, 1011
TspGWI ACGGA 1 cut(s) 758
TspRI CASTG 2 cut(s) 829, 835
VneI GTGCAC 1 cut(s) 167
VpaK11BI GGWCC 1 cut(s) 245
XapI RAATTY 1 cut(s) 387
XceI RCATGY 1 cut(s) 416
XspI CTAG 2 cut(s) 572, 1001
Zsp2I ATGCAT 1 cut(s) 744
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.