RchiOBHm_Chr6g0266191

Long-chain-alcohol

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000676
Physical Location & Seq
Forward (+)
22365277 .. 22366009
733 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ23874

Sequence Viewer

Length: 639 bp
ATGGATGGTGATGGAATCAAAAATTTCATCAAGGTATGGATCATAGCCATTGCATCTCAATGTTATTGTTATTACGTAGCAGCAAGAATCCCAACAAAGAGCATGATGAGGCTCATCTCTCTCCTCCCAATCTTGTACCTACTTCTCATGCTCCCCTTGAACCTCCACTCGATCCATCTTGGTGCCCCCTCAGCCTTCTTTCTTGGTTGTCTTGCCATCTTCAAACTCCTCCTCTTCTCCTTTGACTCTGGTCCTCTATCACCACCCCCAAAAGGACTTCTCCCCTTCATTTCAATAGCTCTTCTTCCCATCAACATTAAGAGACTCCCCAAAAGGCCTCGCTACGGTTACACTATCACAAAATTGGTGCCAAACAAGACAGCTTTGTGGGCATTGAAGGCCTTGCTTTTGGGTGAAATAATTCATGTACGCAAGGATTATAGACAGAATTTACATCCCTATGTACTCACATCCTTGTCCCTTTCCCACCTCTACCTTGGTCTAGAAATAGGCTTTGCTCTGAGTGTAGCCTTGCCTCAAGCCATGTTTGGGTTCGAACTCGAGCCACACTTCAACGAGCCTTACTTTTCCACCTCTCTTCAGGACTTTTGGGGCCGTAGATGGAACCTTGCAGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MBOAT_2

Protein Analysis

212

Amino Acids

24.02

Weight (kDa)

9.65

Isoelectric Point (pI)

39.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 182, 367
AclWI GGATC 2 cut(s) 47, 166
AcsI RAATTY 2 cut(s) 22, 448
AcuI CTGAAG 1 cut(s) 584
AfaI GTAC 3 cut(s) 137, 429, 465
AfiI CCNNNNNNNGG 3 cut(s) 272, 344, 549
AgsI TTSAA 5 cut(s) 160, 223, 294, 397, 574
AluBI AGCT 2 cut(s) 299, 383
AluI AGCT 2 cut(s) 299, 383
Alw26I GTCTC 1 cut(s) 316
AlwI GGATC 2 cut(s) 47, 166
Ama87I CYCGRG 1 cut(s) 560
AoxI GGCC 3 cut(s) 335, 399, 613
ApeKI GCWGC 1 cut(s) 80
ApoI RAATTY 2 cut(s) 22, 448
Asp700I GAANNNNTTC 1 cut(s) 420
AspS9I GGNCC 2 cut(s) 251, 613
AsuHPI GGTGA 3 cut(s) 20, 252, 425
AsuII TTCGAA 1 cut(s) 555
AvaI CYCGRG 1 cut(s) 560
AvaII GGWCC 1 cut(s) 251
BaeGI GKGCMC 1 cut(s) 187
BanI GGYRCC 2 cut(s) 182, 367
BbvCI CCTCAGC 1 cut(s) 190
BbvI GCAGC 1 cut(s) 92
BccI CCATC 5 cut(s) 5, 183, 224, 317, 615
BceAI ACGGC 1 cut(s) 600
BcoDI GTCTC 1 cut(s) 316
BfaI CTAG 1 cut(s) 503
BisI GCNGC 1 cut(s) 81
BlsI GCNGC 1 cut(s) 82
Bme18I GGWCC 1 cut(s) 251
BmeT110I CYCGRG 1 cut(s) 560
BmgT120I GGNCC 2 cut(s) 251, 613
BmiI GGNNCC 4 cut(s) 184, 369, 614, 626
BmsI GCATC 1 cut(s) 62
BoxI GACNNNNGTC 1 cut(s) 249
Bpu10I CCTNAGC 1 cut(s) 190
Bpu14I TTCGAA 1 cut(s) 555
BpuEI CTTGAG 1 cut(s) 522
BsaAI YACGTR 1 cut(s) 76
BsaJI CCNNGG 1 cut(s) 496
Bsc4I CCNNNNNNNGG 3 cut(s) 272, 344, 549
Bse3DI GCAATG 1 cut(s) 48
BseDI CCNNGG 1 cut(s) 496
BseGI GGATG 3 cut(s) 10, 454, 470
BseLI CCNNNNNNNGG 3 cut(s) 272, 344, 549
BseMI GCAATG 1 cut(s) 48
BseMII CTCAG 2 cut(s) 204, 512
BseRI GAGGAG 3 cut(s) 113, 218, 221
BseSI GKGCMC 1 cut(s) 187
BseXI GCAGC 1 cut(s) 92
BshFI GGCC 3 cut(s) 337, 401, 615
BshNI GGYRCC 2 cut(s) 182, 367
BsiHKCI CYCGRG 1 cut(s) 560
BslFI GGGAC 1 cut(s) 463
BslI CCNNNNNNNGG 3 cut(s) 272, 344, 549
BsmAI GTCTC 1 cut(s) 316
BsmFI GGGAC 1 cut(s) 463
BsnI GGCC 3 cut(s) 337, 401, 615
BsoBI CYCGRG 1 cut(s) 560
Bsp119I TTCGAA 1 cut(s) 555
Bsp1286I GDGCHC 1 cut(s) 187
Bsp143I GATC 2 cut(s) 39, 171
BspANI GGCC 3 cut(s) 337, 401, 615
BspCNI CTCAG 2 cut(s) 203, 513
BspLI GGNNCC 4 cut(s) 184, 369, 614, 626
BspPI GGATC 2 cut(s) 47, 166
BspQI GCTCTTC 1 cut(s) 306
BspT104I TTCGAA 1 cut(s) 555
BspT107I GGYRCC 2 cut(s) 182, 367
BsrDI GCAATG 1 cut(s) 48
BssECI CCNNGG 1 cut(s) 496
BssMI GATC 2 cut(s) 39, 171
BssT1I CCWWGG 1 cut(s) 496
Bst4CI ACNGT 1 cut(s) 347
Bst6I CTCTTC 3 cut(s) 239, 306, 603
BstBAI YACGTR 1 cut(s) 76
BstBI TTCGAA 1 cut(s) 555
BstDEI CTNAG 2 cut(s) 190, 521
BstF5I GGATG 3 cut(s) 10, 454, 470
BstKTI GATC 2 cut(s) 42, 174
BstMAI GTCTC 1 cut(s) 316
BstMBI GATC 2 cut(s) 39, 171
BstMWI GCNNNNNNNGC 3 cut(s) 191, 389, 398
BstPAI GACNNNNGTC 1 cut(s) 249
BstSLI GKGCMC 1 cut(s) 187
BstSNI TACGTA 1 cut(s) 76
BstV1I GCAGC 1 cut(s) 92
BsuRI GGCC 3 cut(s) 337, 401, 615
BtsCI GGATG 3 cut(s) 10, 454, 470
Cfr13I GGNCC 2 cut(s) 251, 613
Csp6I GTAC 3 cut(s) 136, 428, 464
CviAII CATG 4 cut(s) 103, 148, 425, 544
CviQI GTAC 3 cut(s) 136, 428, 464
DdeI CTNAG 2 cut(s) 190, 521
DpnI GATC 2 cut(s) 41, 173
DpnII GATC 2 cut(s) 39, 171
Eam1104I CTCTTC 3 cut(s) 239, 306, 603
EarI CTCTTC 3 cut(s) 239, 306, 603
Eco105I TACGTA 1 cut(s) 76
Eco130I CCWWGG 1 cut(s) 496
Eco147I AGGCCT 2 cut(s) 337, 401
Eco47I GGWCC 1 cut(s) 251
Eco57I CTGAAG 1 cut(s) 584
Eco88I CYCGRG 1 cut(s) 560
EcoT14I CCWWGG 1 cut(s) 496
ErhI CCWWGG 1 cut(s) 496
FaeI CATG 4 cut(s) 106, 151, 428, 547
FaiI YATR 8 cut(s) 37, 44, 104, 149, 426, 441, 462, 545
FaqI GGGAC 1 cut(s) 463
FatI CATG 4 cut(s) 102, 147, 424, 543
Fnu4HI GCNGC 1 cut(s) 81
FokI GGATG 3 cut(s) 17, 441, 457
Fsp4HI GCNGC 1 cut(s) 81
FspBI CTAG 1 cut(s) 503
GluI GCNGC 1 cut(s) 81
HaeIII GGCC 3 cut(s) 337, 401, 615
Hin1II CATG 4 cut(s) 106, 151, 428, 547
HinfI GANTC 4 cut(s) 15, 87, 245, 324
HphI GGTGA 3 cut(s) 20, 252, 425
Hpy188I TCNGA 2 cut(s) 522, 638
Hpy188III TCNNGA 2 cut(s) 503, 602
HpyAV CCTTC 3 cut(s) 205, 295, 391
HpyCH4III ACNGT 1 cut(s) 347
HpyCH4IV ACGT 1 cut(s) 75
HpyCH4V TGCA 2 cut(s) 53, 632
HpyF10VI GCNNNNNNNGC 3 cut(s) 191, 389, 398
HpyF3I CTNAG 2 cut(s) 190, 521
HpySE526I ACGT 1 cut(s) 75
Hsp92II CATG 4 cut(s) 106, 151, 428, 547
Kzo9I GATC 2 cut(s) 39, 171
LguI GCTCTTC 1 cut(s) 306
LmnI GCTCC 1 cut(s) 156
LpnPI CCDG 2 cut(s) 234, 587
Lsp1109I GCAGC 1 cut(s) 92
LweI GCATC 1 cut(s) 62
MaeI CTAG 1 cut(s) 503
MaeII ACGT 1 cut(s) 75
MaeIII GTNAC 1 cut(s) 347
MalI GATC 2 cut(s) 41, 173
MboI GATC 2 cut(s) 39, 171
MboII GAAGA 5 cut(s) 211, 226, 293, 296, 590
MhlI GDGCHC 1 cut(s) 187
MluCI AATT 4 cut(s) 22, 362, 420, 448
MlyI GAGTC 2 cut(s) 239, 318
MroXI GAANNNNTTC 1 cut(s) 420
MseI TTAA 1 cut(s) 318
MslI CAYNNNNRTG 3 cut(s) 58, 180, 459
MwoI GCNNNNNNNGC 3 cut(s) 191, 389, 398
NdeII GATC 2 cut(s) 39, 171
NlaIII CATG 4 cut(s) 106, 151, 428, 547
NlaIV GGNNCC 4 cut(s) 184, 369, 614, 626
NspV TTCGAA 1 cut(s) 555
PaeR7I CTCGAG 1 cut(s) 560
PceI AGGCCT 2 cut(s) 337, 401
PciSI GCTCTTC 1 cut(s) 306
PdmI GAANNNNTTC 1 cut(s) 420
PfeI GAWTC 2 cut(s) 15, 87
PkrI GCNGC 1 cut(s) 82
PleI GAGTC 2 cut(s) 239, 318
PpsI GAGTC 2 cut(s) 239, 318
Ppu21I YACGTR 1 cut(s) 76
PshAI GACNNNNGTC 1 cut(s) 249
PspN4I GGNNCC 4 cut(s) 184, 369, 614, 626
PspPI GGNCC 2 cut(s) 251, 613
PspXI VCTCGAGB 1 cut(s) 560
RsaI GTAC 3 cut(s) 137, 429, 465
RsaNI GTAC 3 cut(s) 136, 428, 464
RseI CAYNNNNRTG 3 cut(s) 58, 180, 459
SapI GCTCTTC 1 cut(s) 306
SaqAI TTAA 1 cut(s) 318
SatI GCNGC 1 cut(s) 81
Sau3AI GATC 2 cut(s) 39, 171
Sau96I GGNCC 2 cut(s) 251, 613
SchI GAGTC 2 cut(s) 239, 318
SduI GDGCHC 1 cut(s) 187
SfaNI GCATC 1 cut(s) 62
Sfr274I CTCGAG 1 cut(s) 560
SfuI TTCGAA 1 cut(s) 555
SinI GGWCC 1 cut(s) 251
SlaI CTCGAG 1 cut(s) 560
SmiMI CAYNNNNRTG 3 cut(s) 58, 180, 459
SmlI CTYRAG 2 cut(s) 537, 560
SmoI CTYRAG 2 cut(s) 537, 560
SnaBI TACGTA 1 cut(s) 76
Sse9I AATT 4 cut(s) 22, 362, 420, 448
SseBI AGGCCT 2 cut(s) 337, 401
SspMI CTAG 1 cut(s) 503
StuI AGGCCT 2 cut(s) 337, 401
StyI CCWWGG 1 cut(s) 496
TaaI ACNGT 1 cut(s) 347
TaiI ACGT 1 cut(s) 78
TaqI TCGA 3 cut(s) 170, 555, 561
TasI AATT 4 cut(s) 22, 362, 420, 448
TatI WGTACW 1 cut(s) 463
TfiI GAWTC 2 cut(s) 15, 87
Tru1I TTAA 1 cut(s) 318
Tru9I TTAA 1 cut(s) 318
TseI GCWGC 1 cut(s) 80
TspDTI ATGAA 3 cut(s) 16, 277, 413
VpaK11BI GGWCC 1 cut(s) 251
XapI RAATTY 2 cut(s) 22, 448
XbaI TCTAGA 1 cut(s) 502
XcmI CCANNNNNNNNNTGG 1 cut(s) 494
XhoI CTCGAG 1 cut(s) 560
XmnI GAANNNNTTC 1 cut(s) 420
XspI CTAG 1 cut(s) 503
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.