FvH4_2g09840

Long-chain-alcohol

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000676
Physical Location & Seq
Forward (+)
8696351 .. 8697437
1087 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g09840.t1

Sequence Viewer

Length: 1005 bp
ATGGATGATGATTATGAAATCAAAAACTTCATCAAGGTGTGGATCATAGCCATTGCATCTCAATGTTATTGTTATTATGTAGCAGCAAGAATCCCAACAAAGAGCATGATGAGGCTCATCTCTCTCCTCCCCATCTTCTACCTCCTACTCCTCCTCTTCTCCTTTGACTCCGGTCCGTTGTCACCACCCCCGGCAAGACTTTTCCACTTCATTTCCATAGCTCTTCTCCCCATCAACATTAAGCAACTCCCCAAAAAGCCTTGCAATGGTTACACTATTACAAAGGTGGTGCGAAACAAATATGTTTTGTGGGCAATGAAGGCCTTGCTTTTGGGTGTAGTAGTTCATGTTCGCAAGGATTATAGACATGATCTACATCCCTATGTACTCACAGCCTTGTCCCTTTCCCACCTCTACCTTGGTCTAGAAATAGGCTTTGCTCTCAGTGTAGCCTTGCCTCAAGCCATGCTCGGGTTCGAACTCGAGCCACACTTCAACGAGCCTTACTTCTCCACATCTTTTCAGGACTTTTGGGGTCGTAGATGGAATCTCGTCGTCTCAAACACACTGCGTCCCCTCGTATACCATCCCGTAAGGCGTATATCTACAGGCAAGGGTGGAACCACTTCGAGGCCAACCGTTGCGGCAAAACCTGCGGGGGCTCCAGTTCTGCCGGTCATCTCTGCTTTCACTGTCTCTGGTTTAATGCACGAGCTCTTCTTTTACTATGTCACTCGTGTGCATCCCACAGGGGAAATGACGTGCTTCTTTGTCCTGCAAGGTGTGTGCTTGGCATTTGAACTGCAGGTGAAGAAGGCGCTGGCTCGTAATGTACGGCTTCATCCGCTAGTTTCAGGGCTGCTGACATTGGTGTTTTTGGTTGTCACTACCGATTGGCTTTTCTTCCCTCATATAATAAGAACCGGTGCGGATACAAAGAGTTTAGAAGAGTGTGCAAGTATGGTGGATTTTGTGAAGGCTAGCTATCGTTTCCTATTGTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MBOAT_2

Protein Analysis

335

Amino Acids

37.93

Weight (kDa)

9.48

Isoelectric Point (pI)

36.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MBOAT_2 PF13813 162 - 257 4.4e-15 Membrane bound O-acyl transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 796
Acc36I ACCTGC 2 cut(s) 661, 796
AccI GTMKAC 1 cut(s) 582
AciI CCGC 4 cut(s) 644, 656, 845, 929
AclWI GGATC 1 cut(s) 50
AfaI GTAC 2 cut(s) 387, 834
AfiI CCNNNNNNNGG 3 cut(s) 266, 471, 630
AgeI ACCGGT 1 cut(s) 923
AgsI TTSAA 2 cut(s) 496, 800
AjiI CACGTC 1 cut(s) 762
AleI CACNNNNGTG 1 cut(s) 737
AluBI AGCT 3 cut(s) 221, 715, 984
AluI AGCT 3 cut(s) 221, 715, 984
Alw21I GWGCWC 1 cut(s) 717
Alw26I GTCTC 2 cut(s) 562, 700
AlwI GGATC 1 cut(s) 50
Ama87I CYCGRG 2 cut(s) 470, 482
AoxI GGCC 2 cut(s) 321, 632
ApeKI GCWGC 2 cut(s) 83, 859
AsiGI ACCGGT 1 cut(s) 923
Asp700I GAANNNNTTC 1 cut(s) 625
AspLEI GCGC 1 cut(s) 820
AspS9I GGNCC 1 cut(s) 173
AsuC2I CCSGG 1 cut(s) 191
AsuHPI GGTGA 2 cut(s) 174, 820
AsuII TTCGAA 1 cut(s) 477
AsuNHI GCTAGC 1 cut(s) 980
AvaI CYCGRG 2 cut(s) 470, 482
AvaII GGWCC 1 cut(s) 173
BanII GRGCYC 2 cut(s) 664, 717
BauI CACGAG 2 cut(s) 710, 735
Bbv12I GWGCWC 1 cut(s) 717
BbvI GCAGC 2 cut(s) 95, 846
BccI CCATC 4 cut(s) 140, 239, 537, 594
BceAI ACGGC 1 cut(s) 851
BciVI GTATCC 1 cut(s) 925
BcnI CCSGG 1 cut(s) 191
BcoDI GTCTC 2 cut(s) 562, 700
BfaI CTAG 3 cut(s) 425, 848, 981
BfmI CTRYAG 2 cut(s) 606, 803
BfoI RGCGCY 1 cut(s) 821
BfuAI ACCTGC 2 cut(s) 661, 796
BfuI GTATCC 1 cut(s) 925
BisI GCNGC 3 cut(s) 84, 645, 860
BlsI GCNGC 3 cut(s) 85, 646, 861
Bme1390I CCNGG 1 cut(s) 191
Bme18I GGWCC 1 cut(s) 173
BmeT110I CYCGRG 2 cut(s) 470, 482
BmgBI CACGTC 1 cut(s) 762
BmgT120I GGNCC 1 cut(s) 173
BmiI GGNNCC 2 cut(s) 622, 663
BmrFI CCNGG 1 cut(s) 191
BmsI GCATC 2 cut(s) 65, 751
BmtI GCTAGC 1 cut(s) 984
BoxI GACNNNNGTC 1 cut(s) 171
BpmI CTGGAG 1 cut(s) 648
Bpu14I TTCGAA 1 cut(s) 477
BpuEI CTTGAG 1 cut(s) 444
BpuMI CCSGG 1 cut(s) 191
BsaBI GATNNNNATC 1 cut(s) 375
BsaJI CCNNGG 2 cut(s) 189, 418
BsaWI WCCGGW 2 cut(s) 170, 923
Bsc4I CCNNNNNNNGG 3 cut(s) 266, 471, 630
Bse118I RCCGGY 2 cut(s) 673, 923
Bse1I ACTGG 1 cut(s) 665
Bse3DI GCAATG 3 cut(s) 51, 271, 321
Bse8I GATNNNNATC 1 cut(s) 375
BseDI CCNNGG 2 cut(s) 189, 418
BseGI GGATG 5 cut(s) 10, 376, 586, 742, 841
BseJI GATNNNNATC 1 cut(s) 375
BseLI CCNNNNNNNGG 3 cut(s) 266, 471, 630
BseMI GCAATG 3 cut(s) 51, 271, 321
BseMII CTCAG 1 cut(s) 457
BseNI ACTGG 1 cut(s) 665
BseRI GAGGAG 3 cut(s) 116, 140, 143
BseXI GCAGC 2 cut(s) 95, 846
BshFI GGCC 2 cut(s) 323, 634
BshTI ACCGGT 1 cut(s) 923
BsiHKAI GWGCWC 1 cut(s) 717
BsiHKCI CYCGRG 2 cut(s) 470, 482
BsiSI CCGG 4 cut(s) 171, 191, 674, 924
BslFI GGGAC 2 cut(s) 385, 558
BslI CCNNNNNNNGG 3 cut(s) 266, 471, 630
BsmAI GTCTC 2 cut(s) 562, 700
BsmBI CGTCTC 1 cut(s) 562
BsmFI GGGAC 2 cut(s) 385, 558
BsnI GGCC 2 cut(s) 323, 634
BsoBI CYCGRG 2 cut(s) 470, 482
Bsp119I TTCGAA 1 cut(s) 477
Bsp1286I GDGCHC 2 cut(s) 664, 717
Bsp143I GATC 2 cut(s) 42, 370
BspACI CCGC 4 cut(s) 644, 656, 845, 929
BspANI GGCC 2 cut(s) 323, 634
BspCNI CTCAG 1 cut(s) 456
BspLI GGNNCC 2 cut(s) 622, 663
BspMAI CTGCAG 1 cut(s) 807
BspMI ACCTGC 2 cut(s) 661, 796
BspOI GCTAGC 1 cut(s) 984
BspPI GGATC 1 cut(s) 50
BspQI GCTCTTC 2 cut(s) 228, 722
BspT104I TTCGAA 1 cut(s) 477
BsrDI GCAATG 3 cut(s) 51, 271, 321
BsrFI RCCGGY 2 cut(s) 673, 923
BsrI ACTGG 1 cut(s) 665
BssAI RCCGGY 2 cut(s) 673, 923
BssECI CCNNGG 2 cut(s) 189, 418
BssMI GATC 2 cut(s) 42, 370
BssNAI GTATAC 1 cut(s) 583
BssSI CACGAG 2 cut(s) 710, 735
BssT1I CCWWGG 1 cut(s) 418
Bst1107I GTATAC 1 cut(s) 583
Bst2BI CACGAG 2 cut(s) 710, 735
Bst4CI ACNGT 2 cut(s) 640, 694
Bst6I CTCTTC 4 cut(s) 161, 228, 722, 942
BstAPI GCANNNNNTGC 1 cut(s) 653
BstBI TTCGAA 1 cut(s) 477
BstC8I GCNNGC 2 cut(s) 822, 982
BstDEI CTNAG 1 cut(s) 443
BstF5I GGATG 5 cut(s) 10, 376, 586, 742, 841
BstH2I RGCGCY 1 cut(s) 821
BstHHI GCGC 1 cut(s) 820
BstKTI GATC 2 cut(s) 45, 373
BstMAI GTCTC 2 cut(s) 562, 700
BstMBI GATC 2 cut(s) 42, 370
BstMWI GCNNNNNNNGC 3 cut(s) 320, 653, 844
BstPAI GACNNNNGTC 1 cut(s) 171
BstSCI CCNGG 1 cut(s) 189
BstSFI CTRYAG 2 cut(s) 606, 803
BstV1I GCAGC 2 cut(s) 95, 846
BstZ17I GTATAC 1 cut(s) 583
BsuI GTATCC 1 cut(s) 925
BsuRI GGCC 2 cut(s) 323, 634
BtrI CACGTC 1 cut(s) 762
BtsCI GGATG 5 cut(s) 10, 376, 586, 742, 841
BtsI GCAGTG 1 cut(s) 566
BtsIMutI CAGTG 3 cut(s) 451, 566, 690
BveI ACCTGC 2 cut(s) 661, 796
Cac8I GCNNGC 2 cut(s) 822, 982
CfoI GCGC 1 cut(s) 820
Cfr10I RCCGGY 2 cut(s) 673, 923
Cfr13I GGNCC 1 cut(s) 173
CpoI CGGWCCG 1 cut(s) 173
CseI GACGC 1 cut(s) 560
Csp6I GTAC 2 cut(s) 386, 833
CspAI ACCGGT 1 cut(s) 923
CspCI CAANNNNNGTGG 2 cut(s) 945, 980
CspI CGGWCCG 1 cut(s) 173
CviAII CATG 4 cut(s) 106, 347, 368, 466
CviQI GTAC 2 cut(s) 386, 833
DdeI CTNAG 1 cut(s) 443
DpnI GATC 2 cut(s) 44, 372
DpnII GATC 2 cut(s) 42, 370
Eam1104I CTCTTC 4 cut(s) 161, 228, 722, 942
EarI CTCTTC 4 cut(s) 161, 228, 722, 942
Ecl136II GAGCTC 1 cut(s) 715
Eco130I CCWWGG 1 cut(s) 418
Eco147I AGGCCT 1 cut(s) 323
Eco24I GRGCYC 2 cut(s) 664, 717
Eco47I GGWCC 1 cut(s) 173
Eco53kI GAGCTC 1 cut(s) 715
Eco88I CYCGRG 2 cut(s) 470, 482
EcoICRI GAGCTC 1 cut(s) 715
EcoT14I CCWWGG 1 cut(s) 418
EcoT38I GRGCYC 2 cut(s) 664, 717
ErhI CCWWGG 1 cut(s) 418
Esp3I CGTCTC 1 cut(s) 562
FaeI CATG 4 cut(s) 109, 350, 371, 469
FaqI GGGAC 2 cut(s) 385, 558
FatI CATG 4 cut(s) 105, 346, 367, 465
FauI CCCGC 1 cut(s) 649
FblI GTMKAC 1 cut(s) 582
Fnu4HI GCNGC 3 cut(s) 84, 645, 860
FokI GGATG 5 cut(s) 17, 363, 573, 729, 828
FriOI GRGCYC 2 cut(s) 664, 717
Fsp4HI GCNGC 3 cut(s) 84, 645, 860
FspBI CTAG 3 cut(s) 425, 848, 981
GlaI GCGC 1 cut(s) 819
GluI GCNGC 3 cut(s) 84, 645, 860
GsuI CTGGAG 1 cut(s) 648
HaeII RGCGCY 1 cut(s) 821
HaeIII GGCC 2 cut(s) 323, 634
HapII CCGG 4 cut(s) 171, 191, 674, 924
HgaI GACGC 1 cut(s) 560
HhaI GCGC 1 cut(s) 820
Hin1II CATG 4 cut(s) 109, 350, 371, 469
Hin6I GCGC 1 cut(s) 818
HinP1I GCGC 1 cut(s) 818
HinfI GANTC 3 cut(s) 90, 167, 547
HpaII CCGG 4 cut(s) 171, 191, 674, 924
HphI GGTGA 2 cut(s) 174, 820
Hpy166II GTNNAC 1 cut(s) 583
Hpy188III TCNNGA 2 cut(s) 425, 524
Hpy8I GTNNAC 1 cut(s) 583
Hpy99I CGWCG 1 cut(s) 557
HpyAV CCTTC 3 cut(s) 313, 808, 970
HpyCH4III ACNGT 2 cut(s) 640, 694
HpyCH4IV ACGT 1 cut(s) 761
HpyCH4V TGCA 7 cut(s) 56, 264, 709, 742, 778, 805, 956
HpyF10VI GCNNNNNNNGC 3 cut(s) 320, 653, 844
HpyF3I CTNAG 1 cut(s) 443
HpySE526I ACGT 1 cut(s) 761
Hsp92II CATG 4 cut(s) 109, 350, 371, 469
HspAI GCGC 1 cut(s) 818
Kzo9I GATC 2 cut(s) 42, 370
LguI GCTCTTC 2 cut(s) 228, 722
LmnI GCTCC 1 cut(s) 667
Lsp1109I GCAGC 2 cut(s) 95, 846
LweI GCATC 2 cut(s) 65, 751
MaeI CTAG 3 cut(s) 425, 848, 981
MaeII ACGT 1 cut(s) 761
MaeIII GTNAC 4 cut(s) 180, 269, 730, 883
MalI GATC 2 cut(s) 44, 372
MboI GATC 2 cut(s) 42, 370
MboII GAAGA 7 cut(s) 127, 148, 215, 709, 823, 895, 959
MhlI GDGCHC 2 cut(s) 664, 717
MlyI GAGTC 1 cut(s) 161
MroXI GAANNNNTTC 1 cut(s) 625
MseI TTAA 3 cut(s) 240, 704, 1003
MslI CAYNNNNRTG 4 cut(s) 35, 61, 381, 737
MspI CCGG 4 cut(s) 171, 191, 674, 924
MspR9I CCNGG 1 cut(s) 191
MwoI GCNNNNNNNGC 3 cut(s) 320, 653, 844
NciI CCSGG 1 cut(s) 191
NdeII GATC 2 cut(s) 42, 370
NheI GCTAGC 1 cut(s) 980
NlaIII CATG 4 cut(s) 109, 350, 371, 469
NlaIV GGNNCC 2 cut(s) 622, 663
NmuCI GTSAC 3 cut(s) 180, 730, 883
NspV TTCGAA 1 cut(s) 477
OliI CACNNNNGTG 1 cut(s) 737
PaeR7I CTCGAG 1 cut(s) 482
PaqCI CACCTGC 1 cut(s) 796
PceI AGGCCT 1 cut(s) 323
PciSI GCTCTTC 2 cut(s) 228, 722
PdmI GAANNNNTTC 1 cut(s) 625
PfeI GAWTC 2 cut(s) 90, 547
PinAI ACCGGT 1 cut(s) 923
PkrI GCNGC 3 cut(s) 85, 646, 861
PleI GAGTC 1 cut(s) 161
PpsI GAGTC 1 cut(s) 161
PshAI GACNNNNGTC 1 cut(s) 171
Psp124BI GAGCTC 1 cut(s) 717
PspN4I GGNNCC 2 cut(s) 622, 663
PspPI GGNCC 1 cut(s) 173
PspXI VCTCGAGB 1 cut(s) 482
PsrI GAACNNNNNNTAC 2 cut(s) 333, 365
PstI CTGCAG 1 cut(s) 807
RsaI GTAC 2 cut(s) 387, 834
RsaNI GTAC 2 cut(s) 386, 833
RseI CAYNNNNRTG 4 cut(s) 35, 61, 381, 737
Rsr2I CGGWCCG 1 cut(s) 173
RsrII CGGWCCG 1 cut(s) 173
SacI GAGCTC 1 cut(s) 717
SapI GCTCTTC 2 cut(s) 228, 722
SaqAI TTAA 3 cut(s) 240, 704, 1003
SatI GCNGC 3 cut(s) 84, 645, 860
Sau3AI GATC 2 cut(s) 42, 370
Sau96I GGNCC 1 cut(s) 173
SchI GAGTC 1 cut(s) 161
ScrFI CCNGG 1 cut(s) 191
SduI GDGCHC 2 cut(s) 664, 717
SfaNI GCATC 2 cut(s) 65, 751
SfcI CTRYAG 2 cut(s) 606, 803
Sfr274I CTCGAG 1 cut(s) 482
SfuI TTCGAA 1 cut(s) 477
SinI GGWCC 1 cut(s) 173
SlaI CTCGAG 1 cut(s) 482
SmiMI CAYNNNNRTG 4 cut(s) 35, 61, 381, 737
SmlI CTYRAG 2 cut(s) 459, 482
SmoI CTYRAG 2 cut(s) 459, 482
SseBI AGGCCT 1 cut(s) 323
SsiI CCGC 4 cut(s) 644, 656, 845, 929
SspMI CTAG 3 cut(s) 425, 848, 981
SstI GAGCTC 1 cut(s) 717
StuI AGGCCT 1 cut(s) 323
StyD4I CCNGG 1 cut(s) 189
StyI CCWWGG 1 cut(s) 418
TaaI ACNGT 2 cut(s) 640, 694
TaiI ACGT 1 cut(s) 764
TaqI TCGA 3 cut(s) 477, 483, 629
TatI WGTACW 1 cut(s) 385
TauI GCSGC 1 cut(s) 647
TfiI GAWTC 2 cut(s) 90, 547
Tru1I TTAA 3 cut(s) 240, 704, 1003
Tru9I TTAA 3 cut(s) 240, 704, 1003
TscAI CASTG 3 cut(s) 451, 573, 697
TseFI GTSAC 3 cut(s) 180, 730, 883
TseI GCWGC 2 cut(s) 83, 859
Tsp45I GTSAC 3 cut(s) 180, 730, 883
TspDTI ATGAA 6 cut(s) 19, 30, 199, 332, 335, 830
TspGWI ACGGA 1 cut(s) 165
TspRI CASTG 3 cut(s) 451, 573, 697
VpaK11BI GGWCC 1 cut(s) 173
XbaI TCTAGA 1 cut(s) 424
XcmI CCANNNNNNNNNTGG 1 cut(s) 416
XhoI CTCGAG 1 cut(s) 482
XmiI GTMKAC 1 cut(s) 582
XmnI GAANNNNTTC 1 cut(s) 625
XspI CTAG 3 cut(s) 425, 848, 981
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.