MD11G1208100.v1.1

Long-chain-alcohol

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0000676
Physical Location & Seq
Forward (+)
30307049 .. 30308152
1104 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1208100.v1.1.491

Sequence Viewer

Length: 1104 bp
ATGGAGGGTGAAATCTACAACTTCATCAAGGTATGTTTCCTAGCCAACATATCTCTGTGTTATTGTTTCTACATATCATCCAGAATCCCAAAGGGCATCCTCAGGCTCCTCTCTCTCCTCCCCATCCTCTACCTCTTCATCCTCCTCCCCTTAAACCTCCATTCCTTCCACCTTGGTGGGCCCACCACCTTCTTGCTCGTCTGGCTTGCCACCTTTAAGCTCCTCCTCTTCTCCTTTGATCATGGCCCTCTATCTTCTCCACCCCCACTACCCCTCTTCCAATTCATCTCCCTAGCTATCCTCCCAATCAAAATCAAGCAAAACCCACCTCAAAAATCACCCTCAAATCAGAACCCAGATCACAAAATCCCCCCAAACGCCACAAAATCAGACAACACAAGTTACCCAATTGGTAAAAAGTCAATTCTGTTTGCTGTAAAAGCCTTGCTTTTGGCTTTGGTCGTCGGATCATATGACTATAGGCAACATTTACACCCGTATGTTATATTGGCTTTGTACTGCTGCCACCTGTACCTGGGGCTAGAAATTTTGCTACCCCTGTTTGCGACCCCGGCTCGAGCCGTTTTTGGATTTGAGCTCGAGCCGCATTCCAACGAGCCTTACCTTTCCACTTCGCTTCAAGACTTTTGGGGCCGTAGATGGAACCTCATGGTCACAAAGATTTTACGACCCACTACGTACTACCCCGTACGCAATGTTTTCACGCGTGTAGTCGGGCCTCGATTGGCCCGATTTCTCGCTATGATGTCCACTTTTGTGGTCTCAGGTCTAATGCACGAGGTGATTTATTACTATCTGGCACGTGTGCCTCCGACGTGGGAAGTGACATGGTTCTTTGTGCTGCATGGGGTGTGTGTGGCAATCGAGGTGGAGGTCAAGAAGGCAGTGGCCAACAGGTGGCGGTTAAAACCGGTTGTTTCGTGGCCGTTGACGTTGTTGTTCTTGGCTGTGACGGCCAATTGGCTGTTCTTCCCTCAGCTGCTTAGAAATGGCGTGGATGTGAAGGCTATAAATGAGTATCCAGTTATGGTGGATTTTGTCAAGTCCCACCTGCCCTTAAACTTTAATTGGTGGAAAAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MBOAT_2

Protein Analysis

368

Amino Acids

42.18

Weight (kDa)

9.56

Isoelectric Point (pI)

41.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MBOAT_2 PF13813 201 - 287 1.4e-19 Membrane bound O-acyl transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1080
Acc36I ACCTGC 1 cut(s) 1080
AccB7I CCANNNNNTGG 1 cut(s) 918
AccII CGCG 1 cut(s) 727
AciI CCGC 2 cut(s) 605, 922
AclWI GGATC 1 cut(s) 475
AcoI YGGCCR 3 cut(s) 909, 944, 975
AcsI RAATTY 1 cut(s) 546
AcvI CACGTG 1 cut(s) 824
AdeI CACNNNGTG 1 cut(s) 802
AfaI GTAC 4 cut(s) 518, 533, 701, 711
AfiI CCNNNNNNNGG 2 cut(s) 535, 918
AflIII ACRYGT 2 cut(s) 725, 823
AgeI ACCGGT 1 cut(s) 931
AgsI TTSAA 1 cut(s) 641
AjiI CACGTC 1 cut(s) 837
AjnI CCWGG 1 cut(s) 534
AjuI GAANNNNNNNTTGG 2 cut(s) 971, 1003
AleI CACNNNNGTG 2 cut(s) 174, 776
AluBI AGCT 4 cut(s) 220, 296, 598, 1000
AluI AGCT 4 cut(s) 220, 296, 598, 1000
Alw21I GWGCWC 1 cut(s) 600
Alw26I GTCTC 1 cut(s) 787
AlwI GGATC 1 cut(s) 475
Ama87I CYCGRG 2 cut(s) 576, 599
AoxI GGCC 8 cut(s) 179, 244, 652, 737, 747, 909, 944, 975
ApaI GGGCCC 1 cut(s) 183
ApeKI GCWGC 3 cut(s) 522, 862, 1000
ApoI RAATTY 1 cut(s) 546
AsiGI ACCGGT 1 cut(s) 931
AspS9I GGNCC 6 cut(s) 179, 180, 245, 652, 737, 748
AsuC2I CCSGG 1 cut(s) 572
AsuHPI GGTGA 3 cut(s) 20, 330, 814
AvaI CYCGRG 2 cut(s) 576, 599
AxyI CCTNAGG 1 cut(s) 101
BaeGI GKGCMC 1 cut(s) 183
BalI TGGCCA 1 cut(s) 911
BanII GRGCYC 2 cut(s) 183, 600
BauI CACGAG 1 cut(s) 797
BbrPI CACGTG 1 cut(s) 824
Bbv12I GWGCWC 1 cut(s) 600
BbvCI CCTCAGC 1 cut(s) 996
BbvI GCAGC 3 cut(s) 509, 849, 987
BccI CCATC 2 cut(s) 131, 654
BceAI ACGGC 4 cut(s) 566, 639, 931, 990
BciT130I CCWGG 1 cut(s) 536
BciVI GTATCC 1 cut(s) 1050
BclI TGATCA 1 cut(s) 238
BcnI CCSGG 1 cut(s) 572
BcoDI GTCTC 1 cut(s) 787
BfaI CTAG 3 cut(s) 41, 293, 542
BfmI CTRYAG 1 cut(s) 478
BfuAI ACCTGC 1 cut(s) 1080
BfuI GTATCC 1 cut(s) 1050
BisI GCNGC 4 cut(s) 523, 605, 863, 1001
BlsI GCNGC 4 cut(s) 524, 606, 864, 1002
Bme1390I CCNGG 2 cut(s) 536, 572
BmeT110I CYCGRG 2 cut(s) 576, 599
BmgBI CACGTC 1 cut(s) 837
BmgT120I GGNCC 6 cut(s) 179, 180, 245, 652, 737, 748
BmiI GGNNCC 4 cut(s) 107, 181, 653, 665
BmrFI CCNGG 2 cut(s) 536, 572
BmsI GCATC 1 cut(s) 105
Bpu10I CCTNAGC 1 cut(s) 996
BpuMI CCSGG 1 cut(s) 572
BsaAI YACGTR 2 cut(s) 699, 824
BsaI GGTCTC 1 cut(s) 787
BsaJI CCNNGG 3 cut(s) 172, 535, 570
BsaWI WCCGGW 1 cut(s) 931
Bsc4I CCNNNNNNNGG 2 cut(s) 535, 918
Bse118I RCCGGY 1 cut(s) 931
Bse1I ACTGG 1 cut(s) 1043
Bse21I CCTNAGG 1 cut(s) 101
Bse3DI GCAATG 1 cut(s) 721
BseBI CCWGG 1 cut(s) 536
BseDI CCNNGG 3 cut(s) 172, 535, 570
BseGI GGATG 5 cut(s) 77, 96, 123, 138, 1024
BseLI CCNNNNNNNGG 2 cut(s) 535, 918
BseMI GCAATG 1 cut(s) 721
BseMII CTCAG 3 cut(s) 115, 798, 1010
BseNI ACTGG 1 cut(s) 1043
BseRI GAGGAG 5 cut(s) 98, 107, 134, 212, 215
BseSI GKGCMC 1 cut(s) 183
BseXI GCAGC 3 cut(s) 509, 849, 987
Bsh1236I CGCG 1 cut(s) 727
BshFI GGCC 8 cut(s) 181, 246, 654, 739, 749, 911, 946, 977
BshTI ACCGGT 1 cut(s) 931
BsiHKAI GWGCWC 1 cut(s) 600
BsiHKCI CYCGRG 2 cut(s) 576, 599
BsiSI CCGG 2 cut(s) 572, 932
BsiWI CGTACG 1 cut(s) 709
BslFI GGGAC 1 cut(s) 1051
BslI CCNNNNNNNGG 2 cut(s) 535, 918
BsmAI GTCTC 1 cut(s) 787
BsmFI GGGAC 1 cut(s) 1051
BsmI GAATGC 1 cut(s) 607
BsnI GGCC 8 cut(s) 181, 246, 654, 739, 749, 911, 946, 977
Bso31I GGTCTC 1 cut(s) 787
BsoBI CYCGRG 2 cut(s) 576, 599
Bsp120I GGGCCC 1 cut(s) 179
Bsp1286I GDGCHC 2 cut(s) 183, 600
Bsp143I GATC 3 cut(s) 238, 358, 467
BspACI CCGC 2 cut(s) 605, 922
BspANI GGCC 8 cut(s) 181, 246, 654, 739, 749, 911, 946, 977
BspCNI CTCAG 3 cut(s) 114, 797, 1009
BspFNI CGCG 1 cut(s) 727
BspLI GGNNCC 4 cut(s) 107, 181, 653, 665
BspMI ACCTGC 1 cut(s) 1080
BspPI GGATC 1 cut(s) 475
BspTNI GGTCTC 1 cut(s) 787
BsrDI GCAATG 1 cut(s) 721
BsrFI RCCGGY 1 cut(s) 931
BsrI ACTGG 1 cut(s) 1043
BssAI RCCGGY 1 cut(s) 931
BssECI CCNNGG 3 cut(s) 172, 535, 570
BssMI GATC 3 cut(s) 238, 358, 467
BssSI CACGAG 1 cut(s) 797
BssT1I CCWWGG 1 cut(s) 172
Bst2BI CACGAG 1 cut(s) 797
Bst2UI CCWGG 1 cut(s) 536
Bst6I CTCTTC 3 cut(s) 140, 233, 281
BstBAI YACGTR 2 cut(s) 699, 824
BstC8I GCNNGC 1 cut(s) 207
BstDEI CTNAG 4 cut(s) 101, 784, 996, 1004
BstF5I GGATG 5 cut(s) 77, 96, 123, 138, 1024
BstFNI CGCG 1 cut(s) 727
BstKTI GATC 3 cut(s) 241, 361, 470
BstMAI GTCTC 1 cut(s) 787
BstMBI GATC 3 cut(s) 238, 358, 467
BstMWI GCNNNNNNNGC 5 cut(s) 202, 440, 572, 604, 974
BstNI CCWGG 1 cut(s) 536
BstSCI CCNGG 2 cut(s) 534, 570
BstSFI CTRYAG 1 cut(s) 478
BstSLI GKGCMC 1 cut(s) 183
BstSNI TACGTA 1 cut(s) 699
BstUI CGCG 1 cut(s) 727
BstV1I GCAGC 3 cut(s) 509, 849, 987
BstXI CCANNNNNNTGG 2 cut(s) 176, 778
Bsu36I CCTNAGG 1 cut(s) 101
BsuI GTATCC 1 cut(s) 1050
BsuRI GGCC 8 cut(s) 181, 246, 654, 739, 749, 911, 946, 977
BtrI CACGTC 1 cut(s) 837
BtsCI GGATG 5 cut(s) 77, 96, 123, 138, 1024
BtsI GCAGTG 1 cut(s) 912
BtsIMutI CAGTG 1 cut(s) 912
BveI ACCTGC 1 cut(s) 1080
Cac8I GCNNGC 1 cut(s) 207
Cfr10I RCCGGY 1 cut(s) 931
Cfr13I GGNCC 6 cut(s) 179, 180, 245, 652, 737, 748
Csp6I GTAC 4 cut(s) 517, 532, 700, 710
CspAI ACCGGT 1 cut(s) 931
CspCI CAANNNNNGTGG 2 cut(s) 870, 905
CviAII CATG 4 cut(s) 242, 670, 849, 866
CviQI GTAC 4 cut(s) 517, 532, 700, 710
DdeI CTNAG 4 cut(s) 101, 784, 996, 1004
DpnI GATC 3 cut(s) 240, 360, 469
DpnII GATC 3 cut(s) 238, 358, 467
DraIII CACNNNGTG 1 cut(s) 802
EaeI YGGCCR 3 cut(s) 909, 944, 975
Eam1104I CTCTTC 3 cut(s) 140, 233, 281
EarI CTCTTC 3 cut(s) 140, 233, 281
Ecl136II GAGCTC 1 cut(s) 598
Eco105I TACGTA 1 cut(s) 699
Eco130I CCWWGG 1 cut(s) 172
Eco24I GRGCYC 2 cut(s) 183, 600
Eco31I GGTCTC 1 cut(s) 787
Eco53kI GAGCTC 1 cut(s) 598
Eco72I CACGTG 1 cut(s) 824
Eco81I CCTNAGG 1 cut(s) 101
Eco88I CYCGRG 2 cut(s) 576, 599
EcoICRI GAGCTC 1 cut(s) 598
EcoRII CCWGG 1 cut(s) 534
EcoT14I CCWWGG 1 cut(s) 172
EcoT38I GRGCYC 2 cut(s) 183, 600
ErhI CCWWGG 1 cut(s) 172
FaeI CATG 4 cut(s) 245, 673, 852, 869
FalI AAGNNNNNCTT 2 cut(s) 432, 464
FaqI GGGAC 1 cut(s) 1051
FatI CATG 4 cut(s) 241, 669, 848, 865
FauNDI CATATG 1 cut(s) 472
FbaI TGATCA 1 cut(s) 238
Fnu4HI GCNGC 4 cut(s) 523, 605, 863, 1001
FokI GGATG 5 cut(s) 64, 83, 110, 125, 1031
FriOI GRGCYC 2 cut(s) 183, 600
Fsp4HI GCNGC 4 cut(s) 523, 605, 863, 1001
FspBI CTAG 3 cut(s) 41, 293, 542
GluI GCNGC 4 cut(s) 523, 605, 863, 1001
HaeIII GGCC 8 cut(s) 181, 246, 654, 739, 749, 911, 946, 977
HapII CCGG 2 cut(s) 572, 932
Hin1II CATG 4 cut(s) 245, 673, 852, 869
HincII GTYRAC 1 cut(s) 951
HindII GTYRAC 1 cut(s) 951
HinfI GANTC 1 cut(s) 84
HpaII CCGG 2 cut(s) 572, 932
HphI GGTGA 3 cut(s) 20, 330, 814
Hpy166II GTNNAC 2 cut(s) 771, 951
Hpy188I TCNGA 4 cut(s) 351, 391, 467, 834
Hpy188III TCNNGA 3 cut(s) 81, 641, 898
Hpy8I GTNNAC 2 cut(s) 771, 951
Hpy99I CGWCG 2 cut(s) 467, 838
HpyAV CCTTC 4 cut(s) 175, 199, 895, 1018
HpyCH4IV ACGT 4 cut(s) 698, 823, 836, 953
HpyCH4V TGCA 2 cut(s) 796, 865
HpyF10VI GCNNNNNNNGC 5 cut(s) 202, 440, 572, 604, 974
HpyF3I CTNAG 4 cut(s) 101, 784, 996, 1004
HpySE526I ACGT 4 cut(s) 698, 823, 836, 953
Hsp92II CATG 4 cut(s) 245, 673, 852, 869
Ksp22I TGATCA 1 cut(s) 238
Kzo9I GATC 3 cut(s) 238, 358, 467
LmnI GCTCC 2 cut(s) 111, 225
Lsp1109I GCAGC 3 cut(s) 509, 849, 987
LweI GCATC 1 cut(s) 105
MaeI CTAG 3 cut(s) 41, 293, 542
MaeII ACGT 4 cut(s) 698, 823, 836, 953
MaeIII GTNAC 4 cut(s) 401, 673, 844, 970
MalI GATC 3 cut(s) 240, 360, 469
MboI GATC 3 cut(s) 238, 358, 467
MboII GAAGA 5 cut(s) 127, 220, 246, 268, 982
MfeI CAATTG 2 cut(s) 408, 979
MhlI GDGCHC 2 cut(s) 183, 600
MlsI TGGCCA 1 cut(s) 911
MluCI AATT 6 cut(s) 281, 408, 423, 546, 979, 1087
MluI ACGCGT 1 cut(s) 725
MluNI TGGCCA 1 cut(s) 911
MmeI TCCRAC 3 cut(s) 445, 636, 857
Mox20I TGGCCA 1 cut(s) 911
MscI TGGCCA 1 cut(s) 911
MseI TTAA 5 cut(s) 152, 216, 926, 1079, 1086
MslI CAYNNNNRTG 3 cut(s) 174, 498, 776
Msp20I TGGCCA 1 cut(s) 911
MspA1I CMGCKG 1 cut(s) 1000
MspI CCGG 2 cut(s) 572, 932
MspR9I CCNGG 2 cut(s) 536, 572
MunI CAATTG 2 cut(s) 408, 979
Mva1269I GAATGC 1 cut(s) 607
MvaI CCWGG 1 cut(s) 536
MvnI CGCG 1 cut(s) 727
MwoI GCNNNNNNNGC 5 cut(s) 202, 440, 572, 604, 974
NciI CCSGG 1 cut(s) 572
NdeI CATATG 1 cut(s) 472
NdeII GATC 3 cut(s) 238, 358, 467
NlaIII CATG 4 cut(s) 245, 673, 852, 869
NlaIV GGNNCC 4 cut(s) 107, 181, 653, 665
NmuCI GTSAC 3 cut(s) 673, 844, 970
OliI CACNNNNGTG 2 cut(s) 174, 776
PaeR7I CTCGAG 2 cut(s) 576, 599
PaqCI CACCTGC 1 cut(s) 1080
PcsI WCGNNNNNNNCGW 1 cut(s) 748
PctI GAATGC 1 cut(s) 607
PfeI GAWTC 1 cut(s) 84
Pfl23II CGTACG 1 cut(s) 709
PflMI CCANNNNNTGG 1 cut(s) 918
PinAI ACCGGT 1 cut(s) 931
PkrI GCNGC 4 cut(s) 524, 606, 864, 1002
PmaCI CACGTG 1 cut(s) 824
PmlI CACGTG 1 cut(s) 824
Ppu21I YACGTR 2 cut(s) 699, 824
Psp124BI GAGCTC 1 cut(s) 600
Psp6I CCWGG 1 cut(s) 534
PspCI CACGTG 1 cut(s) 824
PspGI CCWGG 1 cut(s) 534
PspLI CGTACG 1 cut(s) 709
PspN4I GGNNCC 4 cut(s) 107, 181, 653, 665
PspOMI GGGCCC 1 cut(s) 179
PspPI GGNCC 6 cut(s) 179, 180, 245, 652, 737, 748
PspXI VCTCGAGB 2 cut(s) 576, 599
PvuII CAGCTG 1 cut(s) 1000
RsaI GTAC 4 cut(s) 518, 533, 701, 711
RsaNI GTAC 4 cut(s) 517, 532, 700, 710
RseI CAYNNNNRTG 3 cut(s) 174, 498, 776
SacI GAGCTC 1 cut(s) 600
SaqAI TTAA 5 cut(s) 152, 216, 926, 1079, 1086
SatI GCNGC 4 cut(s) 523, 605, 863, 1001
Sau3AI GATC 3 cut(s) 238, 358, 467
Sau96I GGNCC 6 cut(s) 179, 180, 245, 652, 737, 748
ScrFI CCNGG 2 cut(s) 536, 572
SduI GDGCHC 2 cut(s) 183, 600
SfaNI GCATC 1 cut(s) 105
SfcI CTRYAG 1 cut(s) 478
Sfr274I CTCGAG 2 cut(s) 576, 599
SlaI CTCGAG 2 cut(s) 576, 599
SmiMI CAYNNNNRTG 3 cut(s) 174, 498, 776
SmlI CTYRAG 2 cut(s) 576, 599
SmoI CTYRAG 2 cut(s) 576, 599
SnaBI TACGTA 1 cut(s) 699
Sse9I AATT 6 cut(s) 281, 408, 423, 546, 979, 1087
SsiI CCGC 2 cut(s) 605, 922
SspMI CTAG 3 cut(s) 41, 293, 542
SstI GAGCTC 1 cut(s) 600
StyD4I CCNGG 2 cut(s) 534, 570
StyI CCWWGG 1 cut(s) 172
TaiI ACGT 4 cut(s) 701, 826, 839, 956
TaqI TCGA 4 cut(s) 577, 600, 742, 885
TasI AATT 6 cut(s) 281, 408, 423, 546, 979, 1087
TatI WGTACW 1 cut(s) 516
TauI GCSGC 1 cut(s) 607
TfiI GAWTC 1 cut(s) 84
Tru1I TTAA 5 cut(s) 152, 216, 926, 1079, 1086
Tru9I TTAA 5 cut(s) 152, 216, 926, 1079, 1086
TscAI CASTG 1 cut(s) 912
TseFI GTSAC 3 cut(s) 673, 844, 970
TseI GCWGC 3 cut(s) 522, 862, 1000
Tsp45I GTSAC 3 cut(s) 673, 844, 970
TspDTI ATGAA 3 cut(s) 13, 127, 274
TspRI CASTG 1 cut(s) 912
Van91I CCANNNNNTGG 1 cut(s) 918
XapI RAATTY 1 cut(s) 546
XhoI CTCGAG 2 cut(s) 576, 599
XspI CTAG 3 cut(s) 41, 293, 542
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.