pycom11g18170

Long-chain-alcohol

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0000676
Physical Location & Seq
Forward (+)
20391857 .. 20392543
687 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g18170.1

Sequence Viewer

Length: 687 bp
ATGTCAATTCTGTTTGCTGTAAAAGCCTTGCTTTTGGCTTTAGTCGTCGGATCATATCACTATAGGCAACATTTACACCCGTATGTTACATTGGCCTTGTGCTGCTGCCACCTGTACCTGGGGCTAGAAATTTTGCTACCCCTGCTTGCGACCCCGGCTCAAGCCGTTTTTGGATTTGAGCTCGAGCCGCATTCCAACGAGCCTTACCTTTCCACTTCGCTTCAAGACTTTTGGGGCCGTAGATGGAACCTCATGGTCACAAAGATTTTACGACCCACTACGTACTACCCCATACGCAATGTTTTCACGCGTGTAGTCGGGCCTCAATTGGCCCGATTTTTCGCTATGATGTCCACTTTTGCAGTCTCAGGTCTAATGCACGAGGTGATTTATTACTATCTGGCACGTGTGCCTCCGACATGGGAAGTGACATGGTTCTTTGTGCTGCATGGGGCGTGTGTGGCAATCGAGGTGGAGGTCAAGAAGGCAGCGGCCGACAGGTGTCGGTTAAAACCGGTGATTTCGGGGCCGTTGACGTTGTTGTTCTTGGCTGTGACGGCCAATTGGCTGTTCTTCCCGCAGCTGCTCAGAAATGGCGTGGATGTGAAAGCTTTAAATGAGTATTCAGCTATGGTGGCTTTTGTCAAGTCCCACCTGCCCTTAAACTTTTATTGGTGGAAAAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MBOAT_2

Protein Analysis

229

Amino Acids

26.15

Weight (kDa)

9.22

Isoelectric Point (pI)

42.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MBOAT_2 PF13813 62 - 148 1e-19 Membrane bound O-acyl transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 663
Acc36I ACCTGC 1 cut(s) 663
AccII CGCG 1 cut(s) 310
AciI CCGC 3 cut(s) 188, 491, 578
AclWI GGATC 1 cut(s) 58
AcoI YGGCCR 2 cut(s) 492, 558
AcsI RAATTY 1 cut(s) 129
AcvI CACGTG 1 cut(s) 407
AdeI CACNNNGTG 1 cut(s) 385
AfaI GTAC 2 cut(s) 116, 284
AfiI CCNNNNNNNGG 1 cut(s) 118
AflIII ACRYGT 2 cut(s) 308, 406
AgeI ACCGGT 1 cut(s) 514
AgsI TTSAA 1 cut(s) 224
AjnI CCWGG 1 cut(s) 117
AjuI GAANNNNNNNTTGG 2 cut(s) 554, 586
AluBI AGCT 4 cut(s) 181, 583, 611, 629
AluI AGCT 4 cut(s) 181, 583, 611, 629
Alw21I GWGCWC 1 cut(s) 183
Alw26I GTCTC 1 cut(s) 370
AlwI GGATC 1 cut(s) 58
Ama87I CYCGRG 1 cut(s) 182
AoxI GGCC 7 cut(s) 93, 235, 320, 330, 492, 527, 558
ApeKI GCWGC 6 cut(s) 102, 105, 445, 488, 580, 583
ApoI RAATTY 1 cut(s) 129
AsiGI ACCGGT 1 cut(s) 514
AspS9I GGNCC 4 cut(s) 235, 320, 331, 527
AsuC2I CCSGG 1 cut(s) 155
AsuHPI GGTGA 2 cut(s) 397, 529
AvaI CYCGRG 1 cut(s) 182
BanII GRGCYC 1 cut(s) 183
BauI CACGAG 1 cut(s) 380
BbrPI CACGTG 1 cut(s) 407
Bbv12I GWGCWC 1 cut(s) 183
BbvI GCAGC 6 cut(s) 89, 92, 432, 500, 570, 592
BccI CCATC 1 cut(s) 237
BceAI ACGGC 4 cut(s) 149, 222, 514, 573
BciT130I CCWGG 1 cut(s) 119
BcnI CCSGG 1 cut(s) 155
BcoDI GTCTC 1 cut(s) 370
BfaI CTAG 1 cut(s) 125
BfmI CTRYAG 1 cut(s) 61
BfuAI ACCTGC 1 cut(s) 663
BisI GCNGC 8 cut(s) 103, 106, 188, 446, 489, 492, 581, 584
BlsI GCNGC 8 cut(s) 104, 107, 189, 447, 490, 493, 582, 585
Bme1390I CCNGG 2 cut(s) 119, 155
BmeT110I CYCGRG 1 cut(s) 182
BmgT120I GGNCC 4 cut(s) 235, 320, 331, 527
BmiI GGNNCC 3 cut(s) 236, 248, 528
BmrFI CCNGG 2 cut(s) 119, 155
BoxI GACNNNNGTC 1 cut(s) 501
BpuEI CTTGAG 1 cut(s) 144
BpuMI CCSGG 1 cut(s) 155
BsaAI YACGTR 2 cut(s) 282, 407
BsaJI CCNNGG 2 cut(s) 118, 153
BsaWI WCCGGW 1 cut(s) 514
Bsc4I CCNNNNNNNGG 1 cut(s) 118
Bse118I RCCGGY 1 cut(s) 514
Bse3DI GCAATG 1 cut(s) 304
BseBI CCWGG 1 cut(s) 119
BseDI CCNNGG 2 cut(s) 118, 153
BseGI GGATG 1 cut(s) 607
BseLI CCNNNNNNNGG 1 cut(s) 118
BseMI GCAATG 1 cut(s) 304
BseMII CTCAG 2 cut(s) 381, 601
BseX3I CGGCCG 1 cut(s) 492
BseXI GCAGC 6 cut(s) 89, 92, 432, 500, 570, 592
Bsh1236I CGCG 1 cut(s) 310
Bsh1285I CGRYCG 1 cut(s) 495
BshFI GGCC 7 cut(s) 95, 237, 322, 332, 494, 529, 560
BshTI ACCGGT 1 cut(s) 514
BsiEI CGRYCG 1 cut(s) 495
BsiHKAI GWGCWC 1 cut(s) 183
BsiHKCI CYCGRG 1 cut(s) 182
BsiSI CCGG 2 cut(s) 155, 515
BslFI GGGAC 1 cut(s) 634
BslI CCNNNNNNNGG 1 cut(s) 118
BsmAI GTCTC 1 cut(s) 370
BsmFI GGGAC 1 cut(s) 634
BsmI GAATGC 1 cut(s) 190
BsnI GGCC 7 cut(s) 95, 237, 322, 332, 494, 529, 560
BsoBI CYCGRG 1 cut(s) 182
Bsp1286I GDGCHC 1 cut(s) 183
Bsp143I GATC 1 cut(s) 50
BspACI CCGC 3 cut(s) 188, 491, 578
BspANI GGCC 7 cut(s) 95, 237, 322, 332, 494, 529, 560
BspCNI CTCAG 2 cut(s) 380, 600
BspFNI CGCG 1 cut(s) 310
BspLI GGNNCC 3 cut(s) 236, 248, 528
BspMI ACCTGC 1 cut(s) 663
BspPI GGATC 1 cut(s) 58
BsrDI GCAATG 1 cut(s) 304
BsrFI RCCGGY 1 cut(s) 514
BssAI RCCGGY 1 cut(s) 514
BssECI CCNNGG 2 cut(s) 118, 153
BssMI GATC 1 cut(s) 50
BssSI CACGAG 1 cut(s) 380
Bst2BI CACGAG 1 cut(s) 380
Bst2UI CCWGG 1 cut(s) 119
BstBAI YACGTR 2 cut(s) 282, 407
BstC8I GCNNGC 1 cut(s) 147
BstDEI CTNAG 2 cut(s) 367, 587
BstF5I GGATG 1 cut(s) 607
BstFNI CGCG 1 cut(s) 310
BstKTI GATC 1 cut(s) 53
BstMAI GTCTC 1 cut(s) 370
BstMBI GATC 1 cut(s) 50
BstMCI CGRYCG 1 cut(s) 495
BstMWI GCNNNNNNNGC 7 cut(s) 23, 142, 155, 187, 461, 557, 635
BstNI CCWGG 1 cut(s) 119
BstPAI GACNNNNGTC 1 cut(s) 501
BstSCI CCNGG 2 cut(s) 117, 153
BstSFI CTRYAG 1 cut(s) 61
BstSNI TACGTA 1 cut(s) 282
BstUI CGCG 1 cut(s) 310
BstV1I GCAGC 6 cut(s) 89, 92, 432, 500, 570, 592
BstZI CGGCCG 1 cut(s) 492
BsuRI GGCC 7 cut(s) 95, 237, 322, 332, 494, 529, 560
BtsCI GGATG 1 cut(s) 607
BveI ACCTGC 1 cut(s) 663
Cac8I GCNNGC 1 cut(s) 147
Cfr10I RCCGGY 1 cut(s) 514
Cfr13I GGNCC 4 cut(s) 235, 320, 331, 527
Csp6I GTAC 2 cut(s) 115, 283
CspAI ACCGGT 1 cut(s) 514
CspCI CAANNNNNGTGG 2 cut(s) 453, 488
CviAII CATG 4 cut(s) 253, 420, 432, 449
CviQI GTAC 2 cut(s) 115, 283
DdeI CTNAG 2 cut(s) 367, 587
DpnI GATC 1 cut(s) 52
DpnII GATC 1 cut(s) 50
DraI TTTAAA 1 cut(s) 615
DraIII CACNNNGTG 1 cut(s) 385
EaeI YGGCCR 2 cut(s) 492, 558
EagI CGGCCG 1 cut(s) 492
Ecl136II GAGCTC 1 cut(s) 181
EclXI CGGCCG 1 cut(s) 492
Eco105I TACGTA 1 cut(s) 282
Eco24I GRGCYC 1 cut(s) 183
Eco52I CGGCCG 1 cut(s) 492
Eco53kI GAGCTC 1 cut(s) 181
Eco72I CACGTG 1 cut(s) 407
Eco88I CYCGRG 1 cut(s) 182
EcoICRI GAGCTC 1 cut(s) 181
EcoRII CCWGG 1 cut(s) 117
EcoT38I GRGCYC 1 cut(s) 183
FaeI CATG 4 cut(s) 256, 423, 435, 452
FalI AAGNNNNNCTT 2 cut(s) 15, 47
FaqI GGGAC 1 cut(s) 634
FatI CATG 4 cut(s) 252, 419, 431, 448
FauI CCCGC 1 cut(s) 585
Fnu4HI GCNGC 8 cut(s) 103, 106, 188, 446, 489, 492, 581, 584
FokI GGATG 1 cut(s) 614
FriOI GRGCYC 1 cut(s) 183
Fsp4HI GCNGC 8 cut(s) 103, 106, 188, 446, 489, 492, 581, 584
FspBI CTAG 1 cut(s) 125
GluI GCNGC 8 cut(s) 103, 106, 188, 446, 489, 492, 581, 584
HaeIII GGCC 7 cut(s) 95, 237, 322, 332, 494, 529, 560
HapII CCGG 2 cut(s) 155, 515
Hin1II CATG 4 cut(s) 256, 423, 435, 452
HincII GTYRAC 1 cut(s) 534
HindII GTYRAC 1 cut(s) 534
HindIII AAGCTT 1 cut(s) 609
HpaII CCGG 2 cut(s) 155, 515
HphI GGTGA 2 cut(s) 397, 529
Hpy166II GTNNAC 2 cut(s) 354, 534
Hpy188I TCNGA 3 cut(s) 50, 417, 590
Hpy188III TCNNGA 2 cut(s) 224, 481
Hpy8I GTNNAC 2 cut(s) 354, 534
Hpy99I CGWCG 1 cut(s) 50
HpyAV CCTTC 1 cut(s) 478
HpyCH4IV ACGT 3 cut(s) 281, 406, 536
HpyCH4V TGCA 3 cut(s) 362, 379, 448
HpyF10VI GCNNNNNNNGC 7 cut(s) 23, 142, 155, 187, 461, 557, 635
HpyF3I CTNAG 2 cut(s) 367, 587
HpySE526I ACGT 3 cut(s) 281, 406, 536
Hsp92II CATG 4 cut(s) 256, 423, 435, 452
Kzo9I GATC 1 cut(s) 50
Lsp1109I GCAGC 6 cut(s) 89, 92, 432, 500, 570, 592
MaeI CTAG 1 cut(s) 125
MaeII ACGT 3 cut(s) 281, 406, 536
MaeIII GTNAC 4 cut(s) 85, 256, 427, 553
MalI GATC 1 cut(s) 52
MboI GATC 1 cut(s) 50
MboII GAAGA 1 cut(s) 565
MfeI CAATTG 2 cut(s) 326, 562
MhlI GDGCHC 1 cut(s) 183
MluCI AATT 4 cut(s) 6, 129, 326, 562
MluI ACGCGT 1 cut(s) 308
MmeI TCCRAC 3 cut(s) 28, 219, 440
MnlI CCTC 6 cut(s) 260, 333, 376, 423, 463, 469
MseI TTAA 3 cut(s) 509, 614, 662
MslI CAYNNNNRTG 1 cut(s) 81
MspA1I CMGCKG 2 cut(s) 491, 583
MspI CCGG 2 cut(s) 155, 515
MspR9I CCNGG 2 cut(s) 119, 155
MunI CAATTG 2 cut(s) 326, 562
Mva1269I GAATGC 1 cut(s) 190
MvaI CCWGG 1 cut(s) 119
MvnI CGCG 1 cut(s) 310
MwoI GCNNNNNNNGC 7 cut(s) 23, 142, 155, 187, 461, 557, 635
NciI CCSGG 1 cut(s) 155
NdeII GATC 1 cut(s) 50
NlaIII CATG 4 cut(s) 256, 423, 435, 452
NlaIV GGNNCC 3 cut(s) 236, 248, 528
NmuCI GTSAC 3 cut(s) 256, 427, 553
PaeR7I CTCGAG 1 cut(s) 182
PaqCI CACCTGC 1 cut(s) 663
PctI GAATGC 1 cut(s) 190
PinAI ACCGGT 1 cut(s) 514
PkrI GCNGC 8 cut(s) 104, 107, 189, 447, 490, 493, 582, 585
PmaCI CACGTG 1 cut(s) 407
PmlI CACGTG 1 cut(s) 407
Ppu21I YACGTR 2 cut(s) 282, 407
PshAI GACNNNNGTC 1 cut(s) 501
Psp124BI GAGCTC 1 cut(s) 183
Psp6I CCWGG 1 cut(s) 117
PspCI CACGTG 1 cut(s) 407
PspGI CCWGG 1 cut(s) 117
PspN4I GGNNCC 3 cut(s) 236, 248, 528
PspPI GGNCC 4 cut(s) 235, 320, 331, 527
PspXI VCTCGAGB 1 cut(s) 182
PvuII CAGCTG 1 cut(s) 583
RsaI GTAC 2 cut(s) 116, 284
RsaNI GTAC 2 cut(s) 115, 283
RseI CAYNNNNRTG 1 cut(s) 81
SacI GAGCTC 1 cut(s) 183
SaqAI TTAA 3 cut(s) 509, 614, 662
SatI GCNGC 8 cut(s) 103, 106, 188, 446, 489, 492, 581, 584
Sau3AI GATC 1 cut(s) 50
Sau96I GGNCC 4 cut(s) 235, 320, 331, 527
ScrFI CCNGG 2 cut(s) 119, 155
SduI GDGCHC 1 cut(s) 183
SfcI CTRYAG 1 cut(s) 61
Sfr274I CTCGAG 1 cut(s) 182
SlaI CTCGAG 1 cut(s) 182
SmiMI CAYNNNNRTG 1 cut(s) 81
SmlI CTYRAG 2 cut(s) 159, 182
SmoI CTYRAG 2 cut(s) 159, 182
SnaBI TACGTA 1 cut(s) 282
Sse9I AATT 4 cut(s) 6, 129, 326, 562
SsiI CCGC 3 cut(s) 188, 491, 578
SspMI CTAG 1 cut(s) 125
SstI GAGCTC 1 cut(s) 183
StyD4I CCNGG 2 cut(s) 117, 153
TaiI ACGT 3 cut(s) 284, 409, 539
TaqI TCGA 2 cut(s) 183, 468
TasI AATT 4 cut(s) 6, 129, 326, 562
TauI GCSGC 2 cut(s) 190, 494
Tru1I TTAA 3 cut(s) 509, 614, 662
Tru9I TTAA 3 cut(s) 509, 614, 662
TseFI GTSAC 3 cut(s) 256, 427, 553
TseI GCWGC 6 cut(s) 102, 105, 445, 488, 580, 583
Tsp45I GTSAC 3 cut(s) 256, 427, 553
XapI RAATTY 1 cut(s) 129
XhoI CTCGAG 1 cut(s) 182
XspI CTAG 1 cut(s) 125
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.