Rh2CG297700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0019114
Physical Location & Seq
Forward (+)
34387435 .. 34411597
24163 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG297700.1

Sequence Viewer

Length: 276 bp
ATGAAGATGGCAATTAGAATTGGAGTTGGTGTTTGGAAAACCATCATGAACCTAAACTTGGTAGTGATACTAGTTCACTGCAGTTTTGGATCAGTCAAAGTTGAAGCTCTTTCGACTCGTCTTCCTGATACTGAAGATTTTCTGGAGCGTGCCTGGAGAAATATCCATGTACAGAAGAGTTTGACCAATGCAGGACGAGGCCAAGAGAAGACTCCTATTGACCACCCACATGAGGTAGATCGGAGACCCGACTCAAGAGAAGCACCGGATACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

91

Amino Acids

10.33

Weight (kDa)

7.98

Isoelectric Point (pI)

33.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 97
AcuI CTGAAG 1 cut(s) 153
AfaI GTAC 1 cut(s) 171
AfiI CCNNNNNNNGG 2 cut(s) 58, 232
AgsI TTSAA 1 cut(s) 104
AhlI ACTAGT 1 cut(s) 70
AjnI CCWGG 1 cut(s) 152
AjuI GAANNNNNNNTTGG 2 cut(s) 41, 73
AluBI AGCT 1 cut(s) 107
AluI AGCT 1 cut(s) 107
Alw26I GTCTC 1 cut(s) 238
AlwI GGATC 1 cut(s) 97
AoxI GGCC 1 cut(s) 199
Asp700I GAANNNNTTC 1 cut(s) 138
BbsI GAAGAC 2 cut(s) 113, 215
BccI CCATC 1 cut(s) 50
BciT130I CCWGG 1 cut(s) 154
BciVI GTATCC 1 cut(s) 262
BcoDI GTCTC 1 cut(s) 238
BcuI ACTAGT 1 cut(s) 70
BfaI CTAG 1 cut(s) 71
BfmI CTRYAG 1 cut(s) 79
BfuI GTATCC 1 cut(s) 262
Bme1390I CCNGG 1 cut(s) 154
BmrFI CCNGG 1 cut(s) 154
BpiI GAAGAC 2 cut(s) 113, 215
BpmI CTGGAG 2 cut(s) 164, 175
BpuEI CTTGAG 1 cut(s) 238
BsaI GGTCTC 1 cut(s) 238
BsaWI WCCGGW 1 cut(s) 265
BsaXI ACNNNNNCTCC 2 cut(s) 15, 45
Bsc4I CCNNNNNNNGG 2 cut(s) 58, 232
BseBI CCWGG 1 cut(s) 154
BseLI CCNNNNNNNGG 2 cut(s) 58, 232
BshFI GGCC 1 cut(s) 201
BsiSI CCGG 1 cut(s) 266
BslI CCNNNNNNNGG 2 cut(s) 58, 232
BsmAI GTCTC 1 cut(s) 238
BsnI GGCC 1 cut(s) 201
Bso31I GGTCTC 1 cut(s) 238
Bsp1407I TGTACA 1 cut(s) 169
Bsp143I GATC 2 cut(s) 89, 238
BspANI GGCC 1 cut(s) 201
BspHI TCATGA 1 cut(s) 45
BspMAI CTGCAG 1 cut(s) 83
BspPI GGATC 1 cut(s) 97
BspTNI GGTCTC 1 cut(s) 238
BsrGI TGTACA 1 cut(s) 169
BssMI GATC 2 cut(s) 89, 238
Bst2UI CCWGG 1 cut(s) 154
Bst6I CTCTTC 1 cut(s) 170
BstAUI TGTACA 1 cut(s) 169
BstC8I GCNNGC 1 cut(s) 150
BstKTI GATC 2 cut(s) 92, 241
BstMAI GTCTC 1 cut(s) 238
BstMBI GATC 2 cut(s) 89, 238
BstNI CCWGG 1 cut(s) 154
BstSCI CCNGG 1 cut(s) 152
BstSFI CTRYAG 1 cut(s) 79
BstV2I GAAGAC 2 cut(s) 113, 215
BsuI GTATCC 1 cut(s) 262
BsuRI GGCC 1 cut(s) 201
BtsI GCAGTG 1 cut(s) 76
BtsIMutI CAGTG 1 cut(s) 76
Cac8I GCNNGC 1 cut(s) 150
CciI TCATGA 1 cut(s) 45
Csp6I GTAC 1 cut(s) 170
CviAII CATG 3 cut(s) 46, 167, 230
CviJI RGCY 2 cut(s) 107, 201
CviKI_1 RGCY 2 cut(s) 107, 201
CviQI GTAC 1 cut(s) 170
DpnI GATC 2 cut(s) 91, 240
DpnII GATC 2 cut(s) 89, 238
Eam1104I CTCTTC 1 cut(s) 170
EarI CTCTTC 1 cut(s) 170
Eco31I GGTCTC 1 cut(s) 238
Eco57I CTGAAG 1 cut(s) 153
EcoRII CCWGG 1 cut(s) 152
FaeI CATG 3 cut(s) 49, 170, 233
FaiI YATR 4 cut(s) 47, 168, 231, 274
FatI CATG 3 cut(s) 45, 166, 229
FspBI CTAG 1 cut(s) 71
GsuI CTGGAG 2 cut(s) 164, 175
HaeIII GGCC 1 cut(s) 201
HapII CCGG 1 cut(s) 266
Hin1II CATG 3 cut(s) 49, 170, 233
HinfI GANTC 3 cut(s) 115, 211, 251
HpaII CCGG 1 cut(s) 266
Hpy166II GTNNAC 1 cut(s) 76
Hpy188I TCNGA 1 cut(s) 243
Hpy188III TCNNGA 4 cut(s) 46, 125, 143, 255
Hpy8I GTNNAC 1 cut(s) 76
HpyCH4V TGCA 2 cut(s) 81, 191
Hsp92II CATG 3 cut(s) 49, 170, 233
Kzo9I GATC 2 cut(s) 89, 238
LmnI GCTCC 1 cut(s) 145
LpnPI CCDG 5 cut(s) 128, 138, 139, 166, 177
MaeI CTAG 1 cut(s) 71
MalI GATC 2 cut(s) 91, 240
MboI GATC 2 cut(s) 89, 238
MboII GAAGA 5 cut(s) 16, 113, 146, 187, 220
MluCI AATT 2 cut(s) 12, 18
MlyI GAGTC 3 cut(s) 109, 205, 245
MnlI CCTC 2 cut(s) 191, 226
MroXI GAANNNNTTC 1 cut(s) 138
MslI CAYNNNNRTG 1 cut(s) 228
MspI CCGG 1 cut(s) 266
MspR9I CCNGG 1 cut(s) 154
MvaI CCWGG 1 cut(s) 154
NdeII GATC 2 cut(s) 89, 238
NlaIII CATG 3 cut(s) 49, 170, 233
PagI TCATGA 1 cut(s) 45
PdmI GAANNNNTTC 1 cut(s) 138
PleI GAGTC 3 cut(s) 109, 205, 245
PpsI GAGTC 3 cut(s) 109, 205, 245
Psp6I CCWGG 1 cut(s) 152
PspGI CCWGG 1 cut(s) 152
PstI CTGCAG 1 cut(s) 83
RsaI GTAC 1 cut(s) 171
RsaNI GTAC 1 cut(s) 170
RseI CAYNNNNRTG 1 cut(s) 228
Sau3AI GATC 2 cut(s) 89, 238
SchI GAGTC 3 cut(s) 109, 205, 245
ScrFI CCNGG 1 cut(s) 154
SetI ASST 3 cut(s) 54, 109, 237
SfcI CTRYAG 1 cut(s) 79
SmiMI CAYNNNNRTG 1 cut(s) 228
SmlI CTYRAG 1 cut(s) 253
SmoI CTYRAG 1 cut(s) 253
SpeI ACTAGT 1 cut(s) 70
Sse9I AATT 2 cut(s) 12, 18
SspMI CTAG 1 cut(s) 71
StyD4I CCNGG 1 cut(s) 152
TaqI TCGA 1 cut(s) 113
TasI AATT 2 cut(s) 12, 18
TatI WGTACW 1 cut(s) 169
TscAI CASTG 1 cut(s) 83
TspDTI ATGAA 2 cut(s) 17, 62
TspRI CASTG 1 cut(s) 83
XmnI GAANNNNTTC 1 cut(s) 138
XspI CTAG 1 cut(s) 71
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.