Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0019114

Physical Location & Seq

Genomic Coordinates Forward (+)

9258876 .. 9266393

Gene Structure 7518 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG100400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGAACCTCAACTTGGTGGTGATACTAGTTCACTGCCGTTTTGGATCAGTCAAAGTTGAAGCTCTTTCGACTCATCTTCCTGATATTGAAGGTCCAGAGCATGATCTCCTAAATTTGGACTGGACAACAAGGCAGAAAATATGCCTAGGCATAGCAAAAGGTCTGGCTTATTTGCATGAGGAATCGGCAGTGAAGGTTGTACATAGAGACATCAAAACTACGAATGTGTTACTGGACCGAGACTTCAATGCTAAGATCTCGGACTTTGGTTTGGCCAAGCTTGACGAAGAGGAGAACACTCACATTAGCACCAGGATTGCTGGAACTATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_8 Malectin Pkinase_Tyr

Protein Analysis

110

Amino Acids

12.32

Weight (kDa)

5.81

Isoelectric Point (pI)

22.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	7 - 100	4.1e-14	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	42 - 104	6.1e-15	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0019114)

Species	Orthologous Gene IDs
rosa_samantha	Rh2CG297700 Rh2DG334400 Rh5AG094300 Rh5AG100400 Rh5CG103600 Rh5CG103700 Rh5DG090000 Rh5DG090100 Rh7BG155400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	52
AcoI	YGGCCR	1 cut(s)	273
AcsI	RAATTY	1 cut(s)	112
AfaI	GTAC	1 cut(s)	201
AfiI	CCNNNNNNNGG	2 cut(s)	13, 115
AgsI	TTSAA	3 cut(s)	59, 89, 247
AhlI	ACTAGT	1 cut(s)	25
AjnI	CCWGG	1 cut(s)	311
AjuI	GAANNNNNNNTTGG	1 cut(s)	28
AluBI	AGCT	2 cut(s)	62, 280
AluI	AGCT	2 cut(s)	62, 280
Alw26I	GTCTC	2 cut(s)	201, 234
AlwI	GGATC	1 cut(s)	52
AoxI	GGCC	1 cut(s)	273
ApoI	RAATTY	1 cut(s)	112
AspA2I	CCTAGG	1 cut(s)	145
AspS9I	GGNCC	2 cut(s)	92, 235
AsuHPI	GGTGA	1 cut(s)	31
AvaII	GGWCC	2 cut(s)	92, 235
AvrII	CCTAGG	1 cut(s)	145
BalI	TGGCCA	1 cut(s)	275
BceAI	ACGGC	1 cut(s)	21
BciT130I	CCWGG	1 cut(s)	313
BcoDI	GTCTC	2 cut(s)	201, 234
BcuI	ACTAGT	1 cut(s)	25
BfaI	CTAG	2 cut(s)	26, 146
BglII	AGATCT	1 cut(s)	255
BlnI	CCTAGG	1 cut(s)	145
Bme1390I	CCNGG	1 cut(s)	313
Bme18I	GGWCC	2 cut(s)	92, 235
BmgT120I	GGNCC	2 cut(s)	92, 235
BmrFI	CCNGG	1 cut(s)	313
BsaJI	CCNNGG	1 cut(s)	145
Bsc4I	CCNNNNNNNGG	2 cut(s)	13, 115
Bse1I	ACTGG	2 cut(s)	125, 237
BseBI	CCWGG	1 cut(s)	313
BseDI	CCNNGG	1 cut(s)	145
BseLI	CCNNNNNNNGG	2 cut(s)	13, 115
BseNI	ACTGG	2 cut(s)	125, 237
BseRI	GAGGAG	1 cut(s)	305
BshFI	GGCC	1 cut(s)	275
BslI	CCNNNNNNNGG	2 cut(s)	13, 115
BsmAI	GTCTC	2 cut(s)	201, 234
BsnI	GGCC	1 cut(s)	275
Bsp1407I	TGTACA	1 cut(s)	199
Bsp143I	GATC	3 cut(s)	44, 103, 255
BspANI	GGCC	1 cut(s)	275
BspPI	GGATC	1 cut(s)	52
BsrGI	TGTACA	1 cut(s)	199
BsrI	ACTGG	2 cut(s)	125, 237
BssECI	CCNNGG	1 cut(s)	145
BssMI	GATC	3 cut(s)	44, 103, 255
BssT1I	CCWWGG	1 cut(s)	145
Bst2UI	CCWGG	1 cut(s)	313
Bst6I	CTCTTC	1 cut(s)	282
BstAUI	TGTACA	1 cut(s)	199
BstDEI	CTNAG	1 cut(s)	252
BstKTI	GATC	3 cut(s)	47, 106, 258
BstMAI	GTCTC	2 cut(s)	201, 234
BstMBI	GATC	3 cut(s)	44, 103, 255
BstNI	CCWGG	1 cut(s)	313
BstSCI	CCNGG	1 cut(s)	311
BstX2I	RGATCY	1 cut(s)	255
BstYI	RGATCY	1 cut(s)	255
BsuRI	GGCC	1 cut(s)	275
BtsI	GCAGTG	2 cut(s)	31, 195
BtsIMutI	CAGTG	2 cut(s)	31, 195
Cfr13I	GGNCC	2 cut(s)	92, 235
Csp6I	GTAC	1 cut(s)	200
CviAII	CATG	2 cut(s)	101, 176
CviJI	RGCY	4 cut(s)	62, 167, 275, 280
CviKI_1	RGCY	4 cut(s)	62, 167, 275, 280
CviQI	GTAC	1 cut(s)	200
DdeI	CTNAG	1 cut(s)	252
DpnI	GATC	3 cut(s)	46, 105, 257
DpnII	GATC	3 cut(s)	44, 103, 255
EaeI	YGGCCR	1 cut(s)	273
Eam1104I	CTCTTC	1 cut(s)	282
EarI	CTCTTC	1 cut(s)	282
Eco130I	CCWWGG	1 cut(s)	145
Eco47I	GGWCC	2 cut(s)	92, 235
EcoRII	CCWGG	1 cut(s)	311
EcoT14I	CCWWGG	1 cut(s)	145
ErhI	CCWWGG	1 cut(s)	145
FaeI	CATG	2 cut(s)	104, 179
FaiI	YATR	6 cut(s)	102, 142, 152, 177, 204, 329
FatI	CATG	2 cut(s)	100, 175
FspBI	CTAG	2 cut(s)	26, 146
HaeIII	GGCC	1 cut(s)	275
Hin1II	CATG	2 cut(s)	104, 179
HindIII	AAGCTT	1 cut(s)	278
HinfI	GANTC	2 cut(s)	70, 182
HphI	GGTGA	1 cut(s)	31
Hpy166II	GTNNAC	1 cut(s)	31
Hpy188I	TCNGA	1 cut(s)	262
Hpy188III	TCNNGA	2 cut(s)	80, 95
Hpy8I	GTNNAC	1 cut(s)	31
HpyAV	CCTTC	2 cut(s)	83, 187
HpyCH4V	TGCA	1 cut(s)	175
HpyF3I	CTNAG	1 cut(s)	252
Hsp92II	CATG	2 cut(s)	104, 179
Kzo9I	GATC	3 cut(s)	44, 103, 255
LpnPI	CCDG	8 cut(s)	93, 106, 108, 149, 218, 298, 306, 325
MaeI	CTAG	2 cut(s)	26, 146
MaeIII	GTNAC	1 cut(s)	228
MalI	GATC	3 cut(s)	46, 105, 257
MboI	GATC	3 cut(s)	44, 103, 255
MboII	GAAGA	2 cut(s)	68, 299
MflI	RGATCY	1 cut(s)	255
MlsI	TGGCCA	1 cut(s)	275
MluCI	AATT	1 cut(s)	112
MluNI	TGGCCA	1 cut(s)	275
MlyI	GAGTC	1 cut(s)	64
MnlI	CCTC	3 cut(s)	17, 172, 283
Mox20I	TGGCCA	1 cut(s)	275
MscI	TGGCCA	1 cut(s)	275
Msp20I	TGGCCA	1 cut(s)	275
MspR9I	CCNGG	1 cut(s)	313
MvaI	CCWGG	1 cut(s)	313
NdeII	GATC	3 cut(s)	44, 103, 255
NlaIII	CATG	2 cut(s)	104, 179
PfeI	GAWTC	1 cut(s)	182
PleI	GAGTC	1 cut(s)	64
PpsI	GAGTC	1 cut(s)	64
Psp6I	CCWGG	1 cut(s)	311
PspGI	CCWGG	1 cut(s)	311
PspPI	GGNCC	2 cut(s)	92, 235
PsuI	RGATCY	1 cut(s)	255
RsaI	GTAC	1 cut(s)	201
RsaNI	GTAC	1 cut(s)	200
Sau3AI	GATC	3 cut(s)	44, 103, 255
Sau96I	GGNCC	2 cut(s)	92, 235
SchI	GAGTC	1 cut(s)	64
ScrFI	CCNGG	1 cut(s)	313
SetI	ASST	6 cut(s)	9, 64, 94, 163, 198, 282
SinI	GGWCC	2 cut(s)	92, 235
SpeI	ACTAGT	1 cut(s)	25
Sse9I	AATT	1 cut(s)	112
SspMI	CTAG	2 cut(s)	26, 146
StyD4I	CCNGG	1 cut(s)	311
StyI	CCWWGG	1 cut(s)	145
TaqI	TCGA	1 cut(s)	68
TaqII	GACCGA	1 cut(s)	252
TasI	AATT	1 cut(s)	112
TatI	WGTACW	1 cut(s)	199
TfiI	GAWTC	1 cut(s)	182
TscAI	CASTG	2 cut(s)	38, 195
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	2 cut(s)	38, 195
VpaK11BI	GGWCC	2 cut(s)	92, 235
XapI	RAATTY	1 cut(s)	112
XmaJI	CCTAGG	1 cut(s)	145
XspI	CTAG	2 cut(s)	26, 146

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.