Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0019114

Physical Location & Seq

Genomic Coordinates Forward (+)

8362829 .. 8364671

Gene Structure 1843 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG103600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGTTTCTTACAATAATTTTTCCAAGGACTCTGAGCCATCTACATGTAGCGAATACCTGTATGAACTGTTTTCTGTGTAGTTGGCATACAAAACACTCTATGGTTTCATTCACCTCTAATTTTTCTTTTTCAACTGATTGGACATGTATCAGGAACGTTTTCAAAAGCTTTTCTGCACCAAACATCAACTCATTATCTGGAGCGTGCCTGCAGAAATATCCATGTACAAAAGTTCAGTACTCATTGCATATAAATTGTGGTGGAGGAGCGACCACCATTGGAGGAGTCAAATTTGAAGATGATACAGATCTTGGAGGTGGAGCAAAATTTGTTCCAGTGAGAGCTAACTGGGGAACCAAGTTCAAGCATTCCAAAACAAATATGGCTATTGTAATTGGAGTTTCAGTTGGAGCTTCGGTTTTGTGCCTGTTCTTCTTAATTTTTGGCATTCTTTGGTGGAAAGGCTGTCCGGTGGATAGTCAGACATCAAGAGAAGAAGGTGCTGCAAATCTACTATGCTCATATTGGCTTTATTCTTTCAAATTCCATGTGGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0002682 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009611 GO:0009814 GO:0009861 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030054 GO:0031347 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0045088 GO:0048583 GO:0050776 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

185

Amino Acids

20.54

Weight (kDa)

8.84

Isoelectric Point (pI)

29.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019114)

Species	Orthologous Gene IDs
rosa_samantha	Rh2CG297700 Rh2DG334400 Rh5AG094300 Rh5AG100400 Rh5CG103600 Rh5CG103700 Rh5DG090000 Rh5DG090100 Rh7BG155400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	156
AcsI	RAATTY	3 cut(s)	290, 326, 542
AfaI	GTAC	2 cut(s)	226, 239
AflIII	ACRYGT	2 cut(s)	43, 143
AgsI	TTSAA	5 cut(s)	132, 163, 296, 364, 541
AluBI	AGCT	3 cut(s)	168, 344, 413
AluI	AGCT	3 cut(s)	168, 344, 413
ApeKI	GCWGC	1 cut(s)	503
ApoI	RAATTY	3 cut(s)	290, 326, 542
Asp700I	GAANNNNTTC	1 cut(s)	158
AsuHPI	GGTGA	1 cut(s)	103
BbvI	GCAGC	1 cut(s)	490
BccI	CCATC	1 cut(s)	45
BfaI	CTAG	1 cut(s)	556
BfmI	CTRYAG	1 cut(s)	209
BglII	AGATCT	1 cut(s)	307
BisI	GCNGC	1 cut(s)	504
BlsI	GCNGC	1 cut(s)	505
BmcAI	AGTACT	1 cut(s)	239
BmiI	GGNNCC	1 cut(s)	355
BmrI	ACTGGG	1 cut(s)	358
BmuI	ACTGGG	1 cut(s)	358
BpmI	CTGGAG	1 cut(s)	219
BsaBI	GATNNNNATC	1 cut(s)	306
BsaJI	CCNNGG	1 cut(s)	23
BsaWI	WCCGGW	1 cut(s)	469
BsaXI	ACNNNNNCTCC	4 cut(s)	390, 402, 420, 432
Bse1I	ACTGG	2 cut(s)	335, 353
Bse3DI	GCAATG	1 cut(s)	242
Bse8I	GATNNNNATC	1 cut(s)	306
BseDI	CCNNGG	1 cut(s)	23
BseJI	GATNNNNATC	1 cut(s)	306
BseMI	GCAATG	1 cut(s)	242
BseMII	CTCAG	1 cut(s)	23
BseNI	ACTGG	2 cut(s)	335, 353
BseRI	GAGGAG	2 cut(s)	279, 297
BseXI	GCAGC	1 cut(s)	490
BsgI	GTGCAG	1 cut(s)	159
BsiSI	CCGG	1 cut(s)	470
BsmI	GAATGC	2 cut(s)	367, 447
Bsp1407I	TGTACA	1 cut(s)	224
Bsp143I	GATC	1 cut(s)	307
BspCNI	CTCAG	1 cut(s)	24
BspLI	GGNNCC	1 cut(s)	355
BspMAI	CTGCAG	1 cut(s)	213
BsrDI	GCAATG	1 cut(s)	242
BsrGI	TGTACA	1 cut(s)	224
BsrI	ACTGG	2 cut(s)	335, 353
BssECI	CCNNGG	1 cut(s)	23
BssMI	GATC	1 cut(s)	307
BssT1I	CCWWGG	1 cut(s)	23
Bst4CI	ACNGT	1 cut(s)	68
BstAUI	TGTACA	1 cut(s)	224
BstC8I	GCNNGC	2 cut(s)	205, 209
BstDEI	CTNAG	1 cut(s)	32
BstKTI	GATC	1 cut(s)	310
BstMBI	GATC	1 cut(s)	307
BstNSI	RCATGY	2 cut(s)	47, 147
BstSFI	CTRYAG	1 cut(s)	209
BstV1I	GCAGC	1 cut(s)	490
BstX2I	RGATCY	1 cut(s)	307
BstYI	RGATCY	1 cut(s)	307
BtsIMutI	CAGTG	1 cut(s)	342
Cac8I	GCNNGC	2 cut(s)	205, 209
Csp6I	GTAC	2 cut(s)	225, 238
CviAII	CATG	4 cut(s)	44, 144, 222, 548
CviJI	RGCY	7 cut(s)	36, 168, 344, 386, 413, 465, 529
CviKI_1	RGCY	7 cut(s)	36, 168, 344, 386, 413, 465, 529
CviQI	GTAC	2 cut(s)	225, 238
DdeI	CTNAG	1 cut(s)	32
DpnI	GATC	1 cut(s)	309
DpnII	GATC	1 cut(s)	307
Eco130I	CCWWGG	1 cut(s)	23
EcoT14I	CCWWGG	1 cut(s)	23
ErhI	CCWWGG	1 cut(s)	23
FaeI	CATG	4 cut(s)	47, 147, 225, 551
FatI	CATG	4 cut(s)	43, 143, 221, 547
Fnu4HI	GCNGC	1 cut(s)	504
Fsp4HI	GCNGC	1 cut(s)	504
FspBI	CTAG	1 cut(s)	556
GluI	GCNGC	1 cut(s)	504
GsuI	CTGGAG	1 cut(s)	219
HapII	CCGG	1 cut(s)	470
Hin1II	CATG	4 cut(s)	47, 147, 225, 551
HindIII	AAGCTT	1 cut(s)	166
HinfI	GANTC	2 cut(s)	28, 285
HpaII	CCGG	1 cut(s)	470
HphI	GGTGA	1 cut(s)	103
Hpy166II	GTNNAC	1 cut(s)	553
Hpy188I	TCNGA	2 cut(s)	33, 483
Hpy188III	TCNNGA	3 cut(s)	151, 198, 489
Hpy8I	GTNNAC	1 cut(s)	553
HpyAV	CCTTC	1 cut(s)	491
HpyCH4III	ACNGT	1 cut(s)	68
HpyCH4IV	ACGT	1 cut(s)	156
HpyCH4V	TGCA	4 cut(s)	176, 211, 247, 506
HpyF3I	CTNAG	1 cut(s)	32
HpySE526I	ACGT	1 cut(s)	156
Hsp92II	CATG	4 cut(s)	47, 147, 225, 551
Kzo9I	GATC	1 cut(s)	307
LmnI	GCTCC	4 cut(s)	200, 266, 320, 410
LpnPI	CCDG	8 cut(s)	70, 136, 183, 221, 334, 348, 440, 483
Lsp1109I	GCAGC	1 cut(s)	490
MaeI	CTAG	1 cut(s)	556
MaeII	ACGT	1 cut(s)	156
MalI	GATC	1 cut(s)	309
MboI	GATC	1 cut(s)	307
MboII	GAAGA	3 cut(s)	308, 424, 506
MflI	RGATCY	1 cut(s)	307
MluCI	AATT	8 cut(s)	15, 118, 253, 290, 326, 393, 438, 542
MlyI	GAGTC	2 cut(s)	22, 294
MmeI	TCCRAC	1 cut(s)	388
MnlI	CCTC	4 cut(s)	124, 257, 275, 308
MroXI	GAANNNNTTC	1 cut(s)	158
MseI	TTAA	1 cut(s)	437
MslI	CAYNNNNRTG	1 cut(s)	42
MspI	CCGG	1 cut(s)	470
Mva1269I	GAATGC	2 cut(s)	367, 447
NdeII	GATC	1 cut(s)	307
NlaIII	CATG	4 cut(s)	47, 147, 225, 551
NlaIV	GGNNCC	1 cut(s)	355
NspI	RCATGY	2 cut(s)	47, 147
PciI	ACATGT	2 cut(s)	43, 143
PctI	GAATGC	2 cut(s)	367, 447
PdmI	GAANNNNTTC	1 cut(s)	158
PkrI	GCNGC	1 cut(s)	505
PleI	GAGTC	2 cut(s)	22, 293
PpsI	GAGTC	2 cut(s)	22, 293
PscI	ACATGT	2 cut(s)	43, 143
Psp1406I	AACGTT	1 cut(s)	156
PspN4I	GGNNCC	1 cut(s)	355
PstI	CTGCAG	1 cut(s)	213
PsuI	RGATCY	1 cut(s)	307
RsaI	GTAC	2 cut(s)	226, 239
RsaNI	GTAC	2 cut(s)	225, 238
RseI	CAYNNNNRTG	1 cut(s)	42
SaqAI	TTAA	1 cut(s)	437
SatI	GCNGC	1 cut(s)	504
Sau3AI	GATC	1 cut(s)	307
ScaI	AGTACT	1 cut(s)	239
SchI	GAGTC	2 cut(s)	22, 294
SetI	ASST	8 cut(s)	59, 116, 159, 170, 319, 346, 415, 502
SfcI	CTRYAG	1 cut(s)	209
SmiMI	CAYNNNNRTG	1 cut(s)	42
Sse9I	AATT	8 cut(s)	15, 118, 253, 290, 326, 393, 438, 542
SspMI	CTAG	1 cut(s)	556
StyI	CCWWGG	1 cut(s)	23
TaaI	ACNGT	1 cut(s)	68
TaiI	ACGT	1 cut(s)	159
TasI	AATT	8 cut(s)	15, 118, 253, 290, 326, 393, 438, 542
TatI	WGTACW	2 cut(s)	224, 237
Tru1I	TTAA	1 cut(s)	437
Tru9I	TTAA	1 cut(s)	437
TscAI	CASTG	1 cut(s)	342
TseI	GCWGC	1 cut(s)	503
TspDTI	ATGAA	2 cut(s)	77, 96
TspRI	CASTG	1 cut(s)	342
XapI	RAATTY	3 cut(s)	290, 326, 542
XceI	RCATGY	2 cut(s)	47, 147
XcmI	CCANNNNNNNNNTGG	1 cut(s)	379
XmnI	GAANNNNTTC	1 cut(s)	158
XspI	CTAG	1 cut(s)	556
ZrmI	AGTACT	1 cut(s)	239

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.