Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0019114

Physical Location & Seq

Genomic Coordinates Forward (+)

42906432 .. 42914560

Gene Structure 8129 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG334400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGAAGATGGCAATTAGAATTGGAGTTGGTGTTTGGAAAACCATCATGAACCTAAACTTGGTAGTGATACTAGTTCACTGCAGTTTTGGATCAGTCAAAGTTGAAGCTCTTTCGACTCGTCTTCCTGATACTGAAGGTCCAGAGGATGATCATCTCCTATTTTTGGACTGGCCTACAAGGCAGAAAATATGCCTAGGCATAGCAAAAGGTCTGGCTTATTTGCATGAGGAATCAGCAGTGAAGGTTGTACATAGAGACATCAAAACTACGAATGTGTTACTGGACCAAGACCTCAGTGCTATGATATCGGACTTTGGTTTGGCCAAGCTTGATGAAGAGGATAACACTCACATTAGCACCAGGATTGCTGGAACTATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_8 Malectin Pkinase_Tyr

Protein Analysis

126

Amino Acids

13.99

Weight (kDa)

5.66

Isoelectric Point (pI)

26.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	55 - 117	1.1e-12	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	59 - 119	1e-13	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0019114)

Species	Orthologous Gene IDs
rosa_samantha	Rh2CG297700 Rh2DG334400 Rh5AG094300 Rh5AG100400 Rh5CG103600 Rh5CG103700 Rh5DG090000 Rh5DG090100 Rh7BG155400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	97
AcoI	YGGCCR	1 cut(s)	321
AcuI	CTGAAG	1 cut(s)	153
AfaI	GTAC	1 cut(s)	249
AfiI	CCNNNNNNNGG	2 cut(s)	58, 163
AgsI	TTSAA	1 cut(s)	104
AhlI	ACTAGT	1 cut(s)	70
AjnI	CCWGG	1 cut(s)	359
AjuI	GAANNNNNNNTTGG	2 cut(s)	41, 73
AluBI	AGCT	2 cut(s)	107, 328
AluI	AGCT	2 cut(s)	107, 328
Alw26I	GTCTC	1 cut(s)	249
AlwI	GGATC	1 cut(s)	97
AoxI	GGCC	2 cut(s)	170, 321
AspA2I	CCTAGG	1 cut(s)	193
AspS9I	GGNCC	2 cut(s)	137, 283
AvaII	GGWCC	2 cut(s)	137, 283
AvrII	CCTAGG	1 cut(s)	193
BalI	TGGCCA	1 cut(s)	323
BbsI	GAAGAC	1 cut(s)	113
BccI	CCATC	1 cut(s)	50
BciT130I	CCWGG	1 cut(s)	361
BclI	TGATCA	1 cut(s)	148
BcoDI	GTCTC	1 cut(s)	249
BcuI	ACTAGT	1 cut(s)	70
BfaI	CTAG	2 cut(s)	71, 194
BfmI	CTRYAG	1 cut(s)	79
BglI	GCCNNNNNGGC	1 cut(s)	178
BlnI	CCTAGG	1 cut(s)	193
Bme1390I	CCNGG	1 cut(s)	361
Bme18I	GGWCC	2 cut(s)	137, 283
BmgT120I	GGNCC	2 cut(s)	137, 283
BmrFI	CCNGG	1 cut(s)	361
BpiI	GAAGAC	1 cut(s)	113
BsaBI	GATNNNNATC	1 cut(s)	150
BsaJI	CCNNGG	1 cut(s)	193
BsaXI	ACNNNNNCTCC	2 cut(s)	15, 45
Bsc4I	CCNNNNNNNGG	2 cut(s)	58, 163
Bse1I	ACTGG	2 cut(s)	173, 285
Bse8I	GATNNNNATC	1 cut(s)	150
BseBI	CCWGG	1 cut(s)	361
BseDI	CCNNGG	1 cut(s)	193
BseGI	GGATG	1 cut(s)	151
BseJI	GATNNNNATC	1 cut(s)	150
BseLI	CCNNNNNNNGG	2 cut(s)	58, 163
BseMII	CTCAG	1 cut(s)	307
BseNI	ACTGG	2 cut(s)	173, 285
BshFI	GGCC	2 cut(s)	172, 323
BslI	CCNNNNNNNGG	2 cut(s)	58, 163
BsmAI	GTCTC	1 cut(s)	249
BsnI	GGCC	2 cut(s)	172, 323
Bsp1407I	TGTACA	1 cut(s)	247
Bsp143I	GATC	2 cut(s)	89, 148
BspANI	GGCC	2 cut(s)	172, 323
BspCNI	CTCAG	1 cut(s)	306
BspHI	TCATGA	1 cut(s)	45
BspMAI	CTGCAG	1 cut(s)	83
BspPI	GGATC	1 cut(s)	97
BsrGI	TGTACA	1 cut(s)	247
BsrI	ACTGG	2 cut(s)	173, 285
BssECI	CCNNGG	1 cut(s)	193
BssMI	GATC	2 cut(s)	89, 148
BssT1I	CCWWGG	1 cut(s)	193
Bst2UI	CCWGG	1 cut(s)	361
Bst6I	CTCTTC	1 cut(s)	330
BstAUI	TGTACA	1 cut(s)	247
BstDEI	CTNAG	1 cut(s)	293
BstF5I	GGATG	1 cut(s)	151
BstKTI	GATC	2 cut(s)	92, 151
BstMAI	GTCTC	1 cut(s)	249
BstMBI	GATC	2 cut(s)	89, 148
BstMWI	GCNNNNNNNGC	1 cut(s)	178
BstNI	CCWGG	1 cut(s)	361
BstSCI	CCNGG	1 cut(s)	359
BstSFI	CTRYAG	1 cut(s)	79
BstV2I	GAAGAC	1 cut(s)	113
BsuRI	GGCC	2 cut(s)	172, 323
BtsCI	GGATG	1 cut(s)	151
BtsI	GCAGTG	2 cut(s)	76, 243
BtsIMutI	CAGTG	3 cut(s)	76, 243, 301
CciI	TCATGA	1 cut(s)	45
Cfr13I	GGNCC	2 cut(s)	137, 283
Csp6I	GTAC	1 cut(s)	248
CviAII	CATG	2 cut(s)	46, 224
CviJI	RGCY	5 cut(s)	107, 172, 215, 323, 328
CviKI_1	RGCY	5 cut(s)	107, 172, 215, 323, 328
CviQI	GTAC	1 cut(s)	248
DdeI	CTNAG	1 cut(s)	293
DpnI	GATC	2 cut(s)	91, 150
DpnII	GATC	2 cut(s)	89, 148
EaeI	YGGCCR	1 cut(s)	321
Eam1104I	CTCTTC	1 cut(s)	330
EarI	CTCTTC	1 cut(s)	330
Eco130I	CCWWGG	1 cut(s)	193
Eco32I	GATATC	1 cut(s)	306
Eco47I	GGWCC	2 cut(s)	137, 283
Eco57I	CTGAAG	1 cut(s)	153
EcoRII	CCWGG	1 cut(s)	359
EcoRV	GATATC	1 cut(s)	306
EcoT14I	CCWWGG	1 cut(s)	193
ErhI	CCWWGG	1 cut(s)	193
FaeI	CATG	2 cut(s)	49, 227
FaiI	YATR	7 cut(s)	47, 190, 200, 225, 252, 302, 377
FatI	CATG	2 cut(s)	45, 223
FbaI	TGATCA	1 cut(s)	148
FokI	GGATG	1 cut(s)	158
FspBI	CTAG	2 cut(s)	71, 194
HaeIII	GGCC	2 cut(s)	172, 323
Hin1II	CATG	2 cut(s)	49, 227
HindIII	AAGCTT	1 cut(s)	326
HinfI	GANTC	2 cut(s)	115, 230
Hpy166II	GTNNAC	1 cut(s)	76
Hpy188I	TCNGA	1 cut(s)	310
Hpy188III	TCNNGA	3 cut(s)	46, 125, 140
Hpy8I	GTNNAC	1 cut(s)	76
HpyAV	CCTTC	2 cut(s)	128, 235
HpyCH4V	TGCA	2 cut(s)	81, 223
HpyF10VI	GCNNNNNNNGC	1 cut(s)	178
HpyF3I	CTNAG	1 cut(s)	293
Hsp92II	CATG	2 cut(s)	49, 227
Ksp22I	TGATCA	1 cut(s)	148
Kzo9I	GATC	2 cut(s)	89, 148
LpnPI	CCDG	8 cut(s)	138, 153, 154, 197, 266, 346, 354, 373
MaeI	CTAG	2 cut(s)	71, 194
MaeIII	GTNAC	1 cut(s)	276
MalI	GATC	2 cut(s)	91, 150
MboI	GATC	2 cut(s)	89, 148
MboII	GAAGA	3 cut(s)	16, 113, 347
MlsI	TGGCCA	1 cut(s)	323
MluCI	AATT	2 cut(s)	12, 18
MluNI	TGGCCA	1 cut(s)	323
MlyI	GAGTC	1 cut(s)	109
MnlI	CCTC	4 cut(s)	136, 220, 302, 331
Mox20I	TGGCCA	1 cut(s)	323
MscI	TGGCCA	1 cut(s)	323
Msp20I	TGGCCA	1 cut(s)	323
MspR9I	CCNGG	1 cut(s)	361
MvaI	CCWGG	1 cut(s)	361
MwoI	GCNNNNNNNGC	1 cut(s)	178
NdeII	GATC	2 cut(s)	89, 148
NlaIII	CATG	2 cut(s)	49, 227
PagI	TCATGA	1 cut(s)	45
PfeI	GAWTC	1 cut(s)	230
PleI	GAGTC	1 cut(s)	109
PpsI	GAGTC	1 cut(s)	109
Psp6I	CCWGG	1 cut(s)	359
PspGI	CCWGG	1 cut(s)	359
PspPI	GGNCC	2 cut(s)	137, 283
PstI	CTGCAG	1 cut(s)	83
RsaI	GTAC	1 cut(s)	249
RsaNI	GTAC	1 cut(s)	248
Sau3AI	GATC	2 cut(s)	89, 148
Sau96I	GGNCC	2 cut(s)	137, 283
SchI	GAGTC	1 cut(s)	109
ScrFI	CCNGG	1 cut(s)	361
SetI	ASST	7 cut(s)	54, 109, 139, 211, 246, 294, 330
SfcI	CTRYAG	1 cut(s)	79
SinI	GGWCC	2 cut(s)	137, 283
SpeI	ACTAGT	1 cut(s)	70
Sse9I	AATT	2 cut(s)	12, 18
SspMI	CTAG	2 cut(s)	71, 194
StyD4I	CCNGG	1 cut(s)	359
StyI	CCWWGG	1 cut(s)	193
TaqI	TCGA	1 cut(s)	113
TasI	AATT	2 cut(s)	12, 18
TatI	WGTACW	1 cut(s)	247
TfiI	GAWTC	1 cut(s)	230
TscAI	CASTG	3 cut(s)	83, 243, 301
TspDTI	ATGAA	3 cut(s)	17, 62, 348
TspRI	CASTG	3 cut(s)	83, 243, 301
VpaK11BI	GGWCC	2 cut(s)	137, 283
XmaJI	CCTAGG	1 cut(s)	193
XspI	CTAG	2 cut(s)	71, 194

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.