Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0012976

Physical Location & Seq

Genomic Coordinates Forward (+)

61928761 .. 61934903

Gene Structure 6143 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG428000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2901 bp

ATGCAAGTCTCAAACCTTCGTCTCCTCTTGTTTAGCCCCTTCGTCCTTCCTCTCTCACTCTCACCCCTTAAACCCTTCTTCCCCAAATCAAAGCCTTACTCTTTCCTCACCGCCCTCGCCTCCGCCTCCTCCTCCCACCCAAAACGACGCCGTCCCATTCCCTACAGGTCTCCAGGACCCAGAAGCAAAAGCACTCTCAGACACCGAGACAAAGCAATGGAGGATAAGACCGAGTCCGTTTCGTTCAACAAGAGAAGAGCGGAGGGTAACGACAAGAATGAAAGACCCAAGAAGAATCTCCAGAGGAAAGTCCGCGCTCTCAATCCTACCAATACCATAGCTTATGTCCAGTTTCTAGGGACTGGAATGGATACTCTGGATACATCTCCTTCAGTGTTGCTATTCTTTGACAAGCAAAGATTTATTTTCAATGCTGGAGAGGGATTGCAAAGGTTCTGCACAGAGCATAAGATTAAGTTGTCAAAGATAGATCACATATTTCTCTCTCGCGTCTGCTCAGAGACTGCCGGTGGAATTCCAGGTTTGCTGTTGACTTTGGCTGGCATGGGTGAAGAAGGAATGTCTGTTAATGTGTGGGGTCCATCAGATCTGAAGTATTTGGTTGATGCCATGAAGTGTTTCATTCCAAATGCTGCCATGGTTCACACTAGGAGCTTTGGGCCCACACATGGTTCTGTGGGGGGTCCTATGGCTGATGAAACTCAGTTTACAGATCCCATTGTTCTTGTTGACGACGAAGTTGTCAAATTATCAGCCATTCTTCTACGACCAAGTTTCTTGGAAGGGTCTCAGCTCCAGAATGGAGTACCCATCATGCAGAATCCTAGAGAAAAGGTCATTGATGATAGTATGGATCATGCTTCAGAACCCATTAGTCCAAATGGCAGAAGTGTATTTACTGGAAAGCCTGGTGACATGTCTGTAATCTATGTCTGTGAATTACCTGACATCAAAGGGAAATTTGACCCTGCGAAAGCTGTGGCTTTAGGTCTTAGACCAGGGTCAAAATATCGGGAACTGCAACTTGGAAACTCGGTGAAGTCAGATTACCAGAACATCATGGTTCATCCAAGTGATGTAATGGGGCCCTCTGTTCCTGGTCCTATTGTACTCCTCGTCGACTGCCCAACTGAATCTCATTTGCAGGAGTTGTTATCCGTACAATGTCTCAGTAGCTATTATGCAGATTTCTCAGGCCCACCTGAGAATGCTAAGGTTGTCACTTGTGTGATTCATTTGAGTCCTGCATCTTTAATAAGCAGTTCTAATTACCAGAGCTGGATGAAAAGATTTGGTTCAGCCCAACATATCATGGCTGGACATGAAAGGAAGAATGTGGAGATTCCAATTCTAAAGTCAAGTGCAAGAATTGCAGCTCGACTCAACTATCTATGTCCACAGTTCTTTCCAGCTCCAGGTTTCTGGTCTCTTCAGCAGAGTGATTGCTTAGCACCAGAGTCCACTGCTTCTAGTGAGGGTTCTGTTTGTGAAAGCATTTCCGCTGAAAACCTCCTCAAGTTCACTTTGCGGCCATATGCTCATCTTGGATTAGATCGGTCTGTTATTCCAAGTAAGGTGGCTGCCGCAGATGTTATTCATGACTTGCTTTCAGAGAATCCAGAGGTTGTAGATGCTGCCCAATGTGTTAGCCAGTTCTGGCGTCAGTCCACAGAAACAAGGGAAGAGGTAAATTTTGTGCAAGAAGATACAGTAATGGTTGAAGAGCCATGGTTTAGTGAGAATACACTTCCTAGTTGCTTGGAGAATATAAGGAGAGATGATTTGGAGATAGTTCTTCTAGGAACTGGATCATCTCAGCCATCTAAATATCGCAATGTCAGTGCTATCCATATCAACCTTTTTTCCAATGGAGGTTTGCTTTTAGATTGTGGCGAAGGAACCCTAGGACAGCTGAAAAGAAGATATGGTGTAGAGGGTGCTGATAATGCTGTGAGAGGTCTTCGATGTATATGGATTTCTCATATTCATGCTGATCACCATACGGGATTGGCAAGAATACTTGCTCTGCGACATACTTTGTTGAAGGAAGTGCCTCATGAACCACTACTTGTAGTTGGACCAAGACAGCTAAAGAGATATTTGGATGCATACCAAAGACTTGAAGATTTAGATATGCAGTTCCTTGATTGTAAGCACACCACAGAAGCGTCTTTAAATGCTTTTGAGGGTGCTACTGAATCAAATAAACGTCACTCCTCTCCCGAAAAAGATAGGCAACAGAAAGTTGATTCTACTCTATTTGCTAAAGGATCTCGTATGGAGAGCTATTGGAAGAGACCTAATAGTCCAGTTGACGATGGTGTGGTTTTTCCAATTCTAAAGAGTTTGCAAAAATTGCTTAGCGAAGCTGGACTGGAAGCCTTGATTAGTGTTCCTGTCATGCACTGCCCACAGGCATTTGGTGTTGTCTTGAAGGCTTCAGAGAGAATGAATAGTGTTGGAAAAGTGATACCAGGGTGGAAGCTTGTGTACTCTGGTGATACTAGGCCCTGCCCGGCACTTACAGAAGCATCTCGTGGTGCAACAATTCTTATACATGAGGCAACGTTCGAGGATGGCATGGTGGATGAGGCCATAGCAAGAAACCACAGCACAACCAAGGAAGCCATAGAAGTAGGGAACTCTGCAGGTGTTTATCGCATCATCCTTACCCACTTCAGCCAGCGATACCCAAAAATCCCAGTATTTGACGAGACACACATGCATAAGACATGCATTGCATTTGACCTGATGAGTATTAACATAGCTGATTTGCCAGTTCTACCAAAAGTACTTCCATACTTGAAAATGCTCTTTAAAAACGAGATGATAGTCGATGAATCAGATGAGATGTTAGATGCTGCAAGTGTTGCTTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0000963 GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004540 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006399 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0031123 GO:0034414 GO:0034470 GO:0034641 GO:0034660 GO:0042779 GO:0042780 GO:0042781 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043628 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0072684 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0140053 GO:0140098 GO:1901360 GO:1905267

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

Lactamase_B_2 Lactamase_B_4

Protein Analysis

966

Amino Acids

106.9

Weight (kDa)

6.67

Isoelectric Point (pI)

49.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lactamase_B_4	PF13691	122 - 178	4.4e-18	tRNase Z endonuclease
Anti-Pycsar_Apyc1	PF23023	603 - 682	1.4e-07	Anti-Pycsar protein Apyc1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0012976)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16260 AT3G16260 AT3G16260
fragaria_vesca	FvH4_6g31990 FvH4_6g31990
malus_domestica	MD03G1197500.v1.1
prunus_persica	Prupe.3G063700_v2.0.a1
pyrus_communis	pycom03g14880
rosa_chinensis	RchiOBHm_Chr2g0139581
rosa_laevigata	RLG00000019820
rosa_multiflora	Rmu_sc0003427.1_g000004
rosa_roxburghii	Rroxscaffold_2G00105380
rosa_rugosa	Rorug02G0358400
rosa_samantha	Rh2AG408300 Rh2BG418900 Rh2CG394300 Rh2DG428000
rosa_wichuraiana	Rw2G033530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	2660
AasI	GACNNNNNNGTC	2 cut(s)	761, 2325
Acc36I	ACCTGC	1 cut(s)	2660
AccBSI	CCGCTC	1 cut(s)	260
AccI	GTMKAC	1 cut(s)	1140
AccII	CGCG	2 cut(s)	315, 510
AciI	CCGC	7 cut(s)	111, 123, 260, 313, 1521, 1549, 1605
AclI	AACGTT	1 cut(s)	2588
AclWI	GGATC	4 cut(s)	728, 882, 1837, 2299
AcoI	YGGCCR	1 cut(s)	1550
AcsI	RAATTY	3 cut(s)	534, 980, 1711
AcuI	CTGAAG	6 cut(s)	375, 632, 867, 1436, 2445, 2683
AcyI	GRCGYC	2 cut(s)	148, 1681
AfaI	GTAC	5 cut(s)	828, 1131, 1182, 2513, 2814
AfiI	CCNNNNNNNGG	2 cut(s)	689, 1436
AflIII	ACRYGT	1 cut(s)	936
AgsI	TTSAA	7 cut(s)	247, 430, 1742, 2065, 2144, 2455, 2827
AjnI	CCWGG	7 cut(s)	172, 538, 928, 1018, 1117, 1435, 2494
AjuI	GAANNNNNNNTTGG	2 cut(s)	1029, 1061
AleI	CACNNNNGTG	1 cut(s)	1247
AlwI	GGATC	4 cut(s)	728, 882, 1837, 2299
AlwNI	CAGNNNCTG	1 cut(s)	524
AoxI	GGCC	6 cut(s)	680, 1106, 1216, 1550, 2528, 2613
ApaI	GGGCCC	2 cut(s)	684, 1110
ApeKI	GCWGC	5 cut(s)	653, 1394, 1601, 1655, 2882
ApoI	RAATTY	3 cut(s)	534, 980, 1711
Asp700I	GAANNNNTTC	1 cut(s)	638
AspA2I	CCTAGG	1 cut(s)	1924
AspLEI	GCGC	1 cut(s)	317
AsuC2I	CCSGG	1 cut(s)	2537
AsuHPI	GGTGA	7 cut(s)	54, 100, 581, 944, 1069, 2009, 2531
AvaII	GGWCC	5 cut(s)	176, 599, 704, 1121, 2099
AvrII	CCTAGG	1 cut(s)	1924
BaeGI	GKGCMC	2 cut(s)	684, 1110
BaeI	ACNNNNGTAYC	2 cut(s)	2483, 2516
BanII	GRGCYC	2 cut(s)	684, 1110
BarI	GAAGNNNNNNTAC	6 cut(s)	901, 933, 1052, 1084, 2495, 2527
BauI	CACGAG	1 cut(s)	2556
BbsI	GAAGAC	1 cut(s)	1973
BbvI	GCAGC	5 cut(s)	640, 1406, 1588, 1642, 2869
BccI	CCATC	5 cut(s)	610, 839, 1849, 2333, 2591
BceAI	ACGGC	1 cut(s)	135
BciT130I	CCWGG	7 cut(s)	174, 540, 930, 1020, 1119, 1437, 2496
BciVI	GTATCC	2 cut(s)	364, 373
BclI	TGATCA	1 cut(s)	2014
BcnI	CCSGG	1 cut(s)	2537
BfaI	CTAG	8 cut(s)	356, 669, 846, 1491, 1773, 1820, 1925, 2526
BfmI	CTRYAG	2 cut(s)	163, 2667
BfuAI	ACCTGC	1 cut(s)	2660
BfuI	GTATCC	2 cut(s)	364, 373
BglII	AGATCT	1 cut(s)	607
BisI	GCNGC	7 cut(s)	654, 1395, 1550, 1602, 1605, 1656, 2883
BlnI	CCTAGG	1 cut(s)	1924
BlpI	GCTNAGC	2 cut(s)	1468, 2381
BlsI	GCNGC	7 cut(s)	655, 1396, 1551, 1603, 1606, 1657, 2884
BmcAI	AGTACT	1 cut(s)	2814
Bme1390I	CCNGG	8 cut(s)	174, 540, 930, 1020, 1119, 1437, 2496, 2537
Bme18I	GGWCC	5 cut(s)	176, 599, 704, 1121, 2099
BmiI	GGNNCC	7 cut(s)	178, 600, 682, 705, 1107, 1108, 1921
BmrFI	CCNGG	8 cut(s)	174, 540, 930, 1020, 1119, 1437, 2496, 2537
BmrI	ACTGGG	1 cut(s)	2717
BmsI	GCATC	7 cut(s)	616, 1277, 1642, 2116, 2561, 2691, 2869
BmuI	ACTGGG	1 cut(s)	2717
BoxI	GACNNNNGTC	1 cut(s)	1021
BpiI	GAAGAC	1 cut(s)	1973
BpmI	CTGGAG	5 cut(s)	156, 284, 456, 800, 1419
Bpu10I	CCTNAGC	1 cut(s)	1233
Bpu1102I	GCTNAGC	2 cut(s)	1468, 2381
BpuEI	CTTGAG	1 cut(s)	1520
BpuMI	CCSGG	1 cut(s)	2537
BsaHI	GRCGYC	2 cut(s)	148, 1681
BsaI	GGTCTC	4 cut(s)	174, 813, 1452, 2311
BsaJI	CCNNGG	6 cut(s)	657, 1019, 1748, 1924, 2495, 2640
Bsc4I	CCNNNNNNNGG	2 cut(s)	689, 1436
Bse118I	RCCGGY	1 cut(s)	527
Bse1I	ACTGG	9 cut(s)	349, 367, 925, 1672, 1831, 2330, 2400, 2723, 2798
Bse3DI	GCAATG	3 cut(s)	222, 1861, 2757
BseBI	CCWGG	7 cut(s)	174, 540, 930, 1020, 1119, 1437, 2496
BseDI	CCNNGG	6 cut(s)	657, 1019, 1748, 1924, 2495, 2640
BseGI	GGATG	6 cut(s)	1087, 1308, 2131, 2602, 2614, 2685
BseLI	CCNNNNNNNGG	2 cut(s)	689, 1436
BseMI	GCAATG	3 cut(s)	222, 1861, 2757
BseMII	CTCAG	8 cut(s)	211, 531, 737, 824, 1204, 1215, 1227, 1850
BseNI	ACTGG	9 cut(s)	349, 367, 925, 1672, 1831, 2330, 2400, 2723, 2798
BseRI	GAGGAG	6 cut(s)	14, 118, 121, 1124, 1523, 2227
BseSI	GKGCMC	2 cut(s)	684, 1110
BseXI	GCAGC	5 cut(s)	640, 1406, 1588, 1642, 2869
BsgI	GTGCAG	1 cut(s)	442
Bsh1236I	CGCG	2 cut(s)	315, 510
BshFI	GGCC	6 cut(s)	682, 1108, 1218, 1552, 2530, 2615
BsiSI	CCGG	2 cut(s)	528, 2537
BslFI	GGGAC	2 cut(s)	138, 373
BslI	CCNNNNNNNGG	2 cut(s)	689, 1436
BsmBI	CGTCTC	1 cut(s)	26
BsmFI	GGGAC	2 cut(s)	138, 373
BsmI	GAATGC	1 cut(s)	1234
BsnI	GGCC	6 cut(s)	682, 1108, 1218, 1552, 2530, 2615
Bso31I	GGTCTC	4 cut(s)	174, 813, 1452, 2311
Bsp120I	GGGCCC	2 cut(s)	680, 1106
Bsp1286I	GDGCHC	2 cut(s)	684, 1110
Bsp143I	GATC	8 cut(s)	490, 607, 733, 874, 1573, 1829, 2014, 2291
Bsp1720I	GCTNAGC	2 cut(s)	1468, 2381
Bsp19I	CCATGG	2 cut(s)	657, 1748
BspACI	CCGC	7 cut(s)	111, 123, 260, 313, 1521, 1549, 1605
BspANI	GGCC	6 cut(s)	682, 1108, 1218, 1552, 2530, 2615
BspCNI	CTCAG	8 cut(s)	210, 530, 736, 823, 1203, 1216, 1226, 1849
BspFNI	CGCG	2 cut(s)	315, 510
BspHI	TCATGA	2 cut(s)	1618, 2077
BspLI	GGNNCC	7 cut(s)	178, 600, 682, 705, 1107, 1108, 1921
BspMAI	CTGCAG	1 cut(s)	2671
BspMI	ACCTGC	1 cut(s)	2660
BspPI	GGATC	4 cut(s)	728, 882, 1837, 2299
BspQI	GCTCTTC	2 cut(s)	250, 1737
BspTNI	GGTCTC	4 cut(s)	174, 813, 1452, 2311
BsrBI	CCGCTC	1 cut(s)	260
BsrDI	GCAATG	3 cut(s)	222, 1861, 2757
BsrFI	RCCGGY	1 cut(s)	527
BsrI	ACTGG	9 cut(s)	349, 367, 925, 1672, 1831, 2330, 2400, 2723, 2798
BssAI	RCCGGY	1 cut(s)	527
BssECI	CCNNGG	6 cut(s)	657, 1019, 1748, 1924, 2495, 2640
BssMI	GATC	8 cut(s)	490, 607, 733, 874, 1573, 1829, 2014, 2291
BssNI	GRCGYC	2 cut(s)	148, 1681
BssSI	CACGAG	1 cut(s)	2556
BssT1I	CCWWGG	4 cut(s)	657, 1748, 1924, 2640
Bst2BI	CACGAG	1 cut(s)	2556
Bst2UI	CCWGG	7 cut(s)	174, 540, 930, 1020, 1119, 1437, 2496
Bst4CI	ACNGT	2 cut(s)	1422, 1732
Bst6I	CTCTTC	5 cut(s)	250, 1455, 1698, 1737, 2309
BstACI	GRCGYC	2 cut(s)	148, 1681
BstAPI	GCANNNNNTGC	3 cut(s)	1391, 2377, 2891
BstC8I	GCNNGC	2 cut(s)	562, 2705
BstDSI	CCRYGG	2 cut(s)	657, 1748
BstF5I	GGATG	6 cut(s)	1087, 1308, 2131, 2602, 2614, 2685
BstFNI	CGCG	2 cut(s)	315, 510
BstHHI	GCGC	1 cut(s)	317
BstKTI	GATC	8 cut(s)	493, 610, 736, 877, 1576, 1832, 2017, 2294
BstMBI	GATC	8 cut(s)	490, 607, 733, 874, 1573, 1829, 2014, 2291
BstMWI	GCNNNNNNNGC	4 cut(s)	1391, 1967, 2377, 2891
BstNI	CCWGG	7 cut(s)	174, 540, 930, 1020, 1119, 1437, 2496
BstNSI	RCATGY	3 cut(s)	940, 2746, 2757
BstPAI	GACNNNNGTC	1 cut(s)	1021
BstSCI	CCNGG	8 cut(s)	172, 538, 928, 1018, 1117, 1435, 2494, 2535
BstSFI	CTRYAG	2 cut(s)	163, 2667
BstSLI	GKGCMC	2 cut(s)	684, 1110
BstUI	CGCG	2 cut(s)	315, 510
BstV1I	GCAGC	5 cut(s)	640, 1406, 1588, 1642, 2869
BstV2I	GAAGAC	1 cut(s)	1973
BstX2I	RGATCY	3 cut(s)	607, 733, 2291
BstXI	CCANNNNNNTGG	1 cut(s)	1443
BstYI	RGATCY	3 cut(s)	607, 733, 2291
BsuI	GTATCC	2 cut(s)	364, 373
BsuRI	GGCC	6 cut(s)	682, 1108, 1218, 1552, 2530, 2615
BtgI	CCRYGG	2 cut(s)	657, 1748
BtsCI	GGATG	6 cut(s)	1087, 1308, 2131, 2602, 2614, 2685
BtsI	GCAGTG	2 cut(s)	1482, 2425
BtsIMutI	CAGTG	4 cut(s)	399, 1482, 1867, 2425
BveI	ACCTGC	1 cut(s)	2660
Cac8I	GCNNGC	2 cut(s)	562, 2705
CaiI	CAGNNNCTG	1 cut(s)	524
CciI	TCATGA	2 cut(s)	1618, 2077
CfoI	GCGC	1 cut(s)	317
Cfr10I	RCCGGY	1 cut(s)	527
CseI	GACGC	4 cut(s)	156, 499, 1670, 2178
Csp6I	GTAC	5 cut(s)	827, 1130, 1181, 2512, 2813
CspCI	CAANNNNNGTGG	2 cut(s)	1578, 1613
CviQI	GTAC	5 cut(s)	827, 1130, 1181, 2512, 2813
DpnI	GATC	8 cut(s)	492, 609, 735, 876, 1575, 1831, 2016, 2293
DpnII	GATC	8 cut(s)	490, 607, 733, 874, 1573, 1829, 2014, 2291
DraI	TTTAAA	2 cut(s)	2196, 2839
DrdI	GACNNNNNNGTC	2 cut(s)	761, 2325
DseDI	GACNNNNNNGTC	2 cut(s)	761, 2325
EaeI	YGGCCR	1 cut(s)	1550
Eam1104I	CTCTTC	5 cut(s)	250, 1455, 1698, 1737, 2309
EarI	CTCTTC	5 cut(s)	250, 1455, 1698, 1737, 2309
EciI	GGCGGA	1 cut(s)	112
Eco130I	CCWWGG	4 cut(s)	657, 1748, 1924, 2640
Eco24I	GRGCYC	2 cut(s)	684, 1110
Eco31I	GGTCTC	4 cut(s)	174, 813, 1452, 2311
Eco47I	GGWCC	5 cut(s)	176, 599, 704, 1121, 2099
Eco57I	CTGAAG	6 cut(s)	375, 632, 867, 1436, 2445, 2683
EcoO109I	RGGNCCY	5 cut(s)	176, 704, 1106, 1107, 2529
EcoRI	GAATTC	1 cut(s)	534
EcoRII	CCWGG	7 cut(s)	172, 538, 928, 1018, 1117, 1435, 2494
EcoT14I	CCWWGG	4 cut(s)	657, 1748, 1924, 2640
EcoT22I	ATGCAT	3 cut(s)	2131, 2748, 2759
EcoT38I	GRGCYC	2 cut(s)	684, 1110
ErhI	CCWWGG	4 cut(s)	657, 1748, 1924, 2640
Esp3I	CGTCTC	1 cut(s)	26
FalI	AAGNNNNNCTT	1 cut(s)	2878
FaqI	GGGAC	2 cut(s)	138, 373
FauNDI	CATATG	1 cut(s)	1555
FbaI	TGATCA	1 cut(s)	2014
FblI	GTMKAC	1 cut(s)	1140
Fnu4HI	GCNGC	7 cut(s)	654, 1395, 1550, 1602, 1605, 1656, 2883
FokI	GGATG	6 cut(s)	1074, 1315, 2138, 2609, 2621, 2672
FriOI	GRGCYC	2 cut(s)	684, 1110
Fsp4HI	GCNGC	7 cut(s)	654, 1395, 1550, 1602, 1605, 1656, 2883
FspBI	CTAG	8 cut(s)	356, 669, 846, 1491, 1773, 1820, 1925, 2526
GlaI	GCGC	1 cut(s)	316
GluI	GCNGC	7 cut(s)	654, 1395, 1550, 1602, 1605, 1656, 2883
GsuI	CTGGAG	5 cut(s)	156, 284, 456, 800, 1419
HaeIII	GGCC	6 cut(s)	682, 1108, 1218, 1552, 2530, 2615
HapII	CCGG	2 cut(s)	528, 2537
HgaI	GACGC	4 cut(s)	156, 499, 1670, 2178
HhaI	GCGC	1 cut(s)	317
Hin1I	GRCGYC	2 cut(s)	148, 1681
Hin6I	GCGC	1 cut(s)	315
HinP1I	GCGC	1 cut(s)	315
HincII	GTYRAC	4 cut(s)	552, 751, 1141, 2335
HindII	GTYRAC	4 cut(s)	552, 751, 1141, 2335
HindIII	AAGCTT	1 cut(s)	2504
HpaII	CCGG	2 cut(s)	528, 2537
HphI	GGTGA	7 cut(s)	54, 100, 581, 944, 1069, 2009, 2531
Hpy188I	TCNGA	9 cut(s)	200, 520, 607, 612, 886, 1066, 1633, 2464, 2866
Hpy188III	TCNNGA	9 cut(s)	301, 377, 817, 1034, 1619, 1640, 2078, 2243, 2452
Hpy99I	CGWCG	3 cut(s)	150, 758, 1142
HpyCH4III	ACNGT	2 cut(s)	1422, 1732
HpyCH4IV	ACGT	2 cut(s)	2230, 2588
HpyF10VI	GCNNNNNNNGC	4 cut(s)	1391, 1967, 2377, 2891
HpySE526I	ACGT	2 cut(s)	2230, 2588
Hsp92I	GRCGYC	2 cut(s)	148, 1681
HspAI	GCGC	1 cut(s)	315
Ksp22I	TGATCA	1 cut(s)	2014
Kzo9I	GATC	8 cut(s)	490, 607, 733, 874, 1573, 1829, 2014, 2291
LguI	GCTCTTC	2 cut(s)	250, 1737
LmnI	GCTCC	3 cut(s)	672, 819, 1438
Lsp1109I	GCAGC	5 cut(s)	640, 1406, 1588, 1642, 2869
LweI	GCATC	7 cut(s)	616, 1277, 1642, 2116, 2561, 2691, 2869
MaeI	CTAG	8 cut(s)	356, 669, 846, 1491, 1773, 1820, 1925, 2526
MaeII	ACGT	2 cut(s)	2230, 2588
MaeIII	GTNAC	4 cut(s)	266, 932, 1240, 2231
MalI	GATC	8 cut(s)	492, 609, 735, 876, 1575, 1831, 2016, 2293
MbiI	CCGCTC	1 cut(s)	260
MboI	GATC	8 cut(s)	490, 607, 733, 874, 1573, 1829, 2014, 2291
MflI	RGATCY	3 cut(s)	607, 733, 2291
MhlI	GDGCHC	2 cut(s)	684, 1110
MlyI	GAGTC	4 cut(s)	242, 1270, 1395, 1487
MmeI	TCCRAC	2 cut(s)	2077, 2461
Mph1103I	ATGCAT	3 cut(s)	2131, 2748, 2759
MroXI	GAANNNNTTC	1 cut(s)	638
MseI	TTAA	7 cut(s)	69, 474, 588, 1274, 2195, 2781, 2838
MslI	CAYNNNNRTG	3 cut(s)	1092, 1247, 2007
MspA1I	CMGCKG	2 cut(s)	1523, 1933
MspI	CCGG	2 cut(s)	528, 2537
MspR9I	CCNGG	8 cut(s)	174, 540, 930, 1020, 1119, 1437, 2496, 2537
Mva1269I	GAATGC	1 cut(s)	1234
MvaI	CCWGG	7 cut(s)	174, 540, 930, 1020, 1119, 1437, 2496
MvnI	CGCG	2 cut(s)	315, 510
MwoI	GCNNNNNNNGC	4 cut(s)	1391, 1967, 2377, 2891
NciI	CCSGG	1 cut(s)	2537
NcoI	CCATGG	2 cut(s)	657, 1748
NdeI	CATATG	1 cut(s)	1555
NdeII	GATC	8 cut(s)	490, 607, 733, 874, 1573, 1829, 2014, 2291
NlaIV	GGNNCC	7 cut(s)	178, 600, 682, 705, 1107, 1108, 1921
NmuCI	GTSAC	3 cut(s)	932, 1240, 2231
NsiI	ATGCAT	3 cut(s)	2131, 2748, 2759
NspI	RCATGY	3 cut(s)	940, 2746, 2757
OliI	CACNNNNGTG	1 cut(s)	1247
PagI	TCATGA	2 cut(s)	1618, 2077
PaqCI	CACCTGC	1 cut(s)	2660
PciI	ACATGT	1 cut(s)	936
PciSI	GCTCTTC	2 cut(s)	250, 1737
PctI	GAATGC	1 cut(s)	1234
PdmI	GAANNNNTTC	1 cut(s)	638
PfeI	GAWTC	9 cut(s)	295, 841, 1154, 1252, 1363, 1636, 2219, 2270, 2861
PflFI	GACNNNGTC	2 cut(s)	150, 232
PfoI	TCCNGGA	1 cut(s)	172
PkrI	GCNGC	7 cut(s)	655, 1396, 1551, 1603, 1606, 1657, 2884
PleI	GAGTC	4 cut(s)	241, 1269, 1395, 1486
PpsI	GAGTC	4 cut(s)	241, 1269, 1395, 1486
PpuMI	RGGWCCY	2 cut(s)	176, 704
PscI	ACATGT	1 cut(s)	936
PshAI	GACNNNNGTC	1 cut(s)	1021
Psp1406I	AACGTT	1 cut(s)	2588
Psp5II	RGGWCCY	2 cut(s)	176, 704
Psp6I	CCWGG	7 cut(s)	172, 538, 928, 1018, 1117, 1435, 2494
PspGI	CCWGG	7 cut(s)	172, 538, 928, 1018, 1117, 1435, 2494
PspN4I	GGNNCC	7 cut(s)	178, 600, 682, 705, 1107, 1108, 1921
PspOMI	GGGCCC	2 cut(s)	680, 1106
PspPPI	RGGWCCY	2 cut(s)	176, 704
PstI	CTGCAG	1 cut(s)	2671
PstNI	CAGNNNCTG	1 cut(s)	524
PsuI	RGATCY	3 cut(s)	607, 733, 2291
PsyI	GACNNNGTC	2 cut(s)	150, 232
PvuII	CAGCTG	1 cut(s)	1933
RsaI	GTAC	5 cut(s)	828, 1131, 1182, 2513, 2814
RsaNI	GTAC	5 cut(s)	827, 1130, 1181, 2512, 2813
RseI	CAYNNNNRTG	3 cut(s)	1092, 1247, 2007
SalI	GTCGAC	1 cut(s)	1139
SapI	GCTCTTC	2 cut(s)	250, 1737
SaqAI	TTAA	7 cut(s)	69, 474, 588, 1274, 2195, 2781, 2838
SatI	GCNGC	7 cut(s)	654, 1395, 1550, 1602, 1605, 1656, 2883
Sau3AI	GATC	8 cut(s)	490, 607, 733, 874, 1573, 1829, 2014, 2291
ScaI	AGTACT	1 cut(s)	2814
SchI	GAGTC	4 cut(s)	242, 1270, 1395, 1487
ScrFI	CCNGG	8 cut(s)	174, 540, 930, 1020, 1119, 1437, 2496, 2537
SduI	GDGCHC	2 cut(s)	684, 1110
SfaNI	GCATC	7 cut(s)	616, 1277, 1642, 2116, 2561, 2691, 2869
SfcI	CTRYAG	2 cut(s)	163, 2667
SinI	GGWCC	5 cut(s)	176, 599, 704, 1121, 2099
SmiMI	CAYNNNNRTG	3 cut(s)	1092, 1247, 2007
SmlI	CTYRAG	1 cut(s)	1535
SmoI	CTYRAG	1 cut(s)	1535
SsiI	CCGC	7 cut(s)	111, 123, 260, 313, 1521, 1549, 1605
SspMI	CTAG	8 cut(s)	356, 669, 846, 1491, 1773, 1820, 1925, 2526
StyD4I	CCNGG	8 cut(s)	172, 538, 928, 1018, 1117, 1435, 2494, 2535
StyI	CCWWGG	4 cut(s)	657, 1748, 1924, 2640
TaaI	ACNGT	2 cut(s)	1422, 1732
TaiI	ACGT	2 cut(s)	2233, 2591
TaqI	TCGA	5 cut(s)	1140, 1399, 1984, 2592, 2856
TaqII	GACCGA	2 cut(s)	245, 1566
TatI	WGTACW	3 cut(s)	1129, 2511, 2812
TauI	GCSGC	2 cut(s)	1552, 1607
TfiI	GAWTC	9 cut(s)	295, 841, 1154, 1252, 1363, 1636, 2219, 2270, 2861
Tru1I	TTAA	7 cut(s)	69, 474, 588, 1274, 2195, 2781, 2838
Tru9I	TTAA	7 cut(s)	69, 474, 588, 1274, 2195, 2781, 2838
TscAI	CASTG	4 cut(s)	399, 1489, 1867, 2432
TseFI	GTSAC	3 cut(s)	932, 1240, 2231
TseI	GCWGC	5 cut(s)	653, 1394, 1601, 1655, 2882
Tsp45I	GTSAC	3 cut(s)	932, 1240, 2231
TspGWI	ACGGA	2 cut(s)	226, 1168
TspRI	CASTG	4 cut(s)	399, 1489, 1867, 2432
Tth111I	GACNNNGTC	2 cut(s)	150, 232
VpaK11BI	GGWCC	5 cut(s)	176, 599, 704, 1121, 2099
XapI	RAATTY	3 cut(s)	534, 980, 1711
XceI	RCATGY	3 cut(s)	940, 2746, 2757
XmaJI	CCTAGG	1 cut(s)	1924
XmiI	GTMKAC	1 cut(s)	1140
XmnI	GAANNNNTTC	1 cut(s)	638
XspI	CTAG	8 cut(s)	356, 669, 846, 1491, 1773, 1820, 1925, 2526
ZrmI	AGTACT	1 cut(s)	2814
Zsp2I	ATGCAT	3 cut(s)	2131, 2748, 2759

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.